Protein–RNA interactions for Protein: O95484

CLDN9, Claudin-9, humanhuman

Predictions only

Length 217 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN9O95484 AL445675.2-201ENST00000620291 557 ntBASIC18.42■□□□□ 0.54
CLDN9O95484 CABP2-204ENST00000636477 941 ntTSL 5 BASIC18.42■□□□□ 0.54
CLDN9O95484 GABBR1-202ENST00000376977 1739 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
CLDN9O95484 ZNF768-202ENST00000562803 1999 ntAPPRIS ALT2 TSL 3 BASIC18.42■□□□□ 0.54
CLDN9O95484 ACVR1B-203ENST00000426655 1782 ntTSL 2 BASIC18.42■□□□□ 0.54
CLDN9O95484 RPS6KA1-203ENST00000374166 3131 ntTSL 5 BASIC18.42■□□□□ 0.54
CLDN9O95484 ZAR1L-202ENST00000533490 1564 ntAPPRIS P1 TSL 5 BASIC18.42■□□□□ 0.54
CLDN9O95484 AC093525.10-201ENST00000625130 1569 ntBASIC18.42■□□□□ 0.54
CLDN9O95484 KRT6C-201ENST00000252250 2289 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
CLDN9O95484 KRT6B-201ENST00000252252 2282 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
CLDN9O95484 SLC29A2-201ENST00000311161 2262 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
CLDN9O95484 FAM72C-202ENST00000584486 2297 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
CLDN9O95484 IQSEC1-201ENST00000273221 5279 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
CLDN9O95484 GCDH-216ENST00000591470 1867 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
CLDN9O95484 SLC35B2-205ENST00000538577 1909 ntTSL 2 BASIC18.41■□□□□ 0.54
CLDN9O95484 CYTH1-209ENST00000589296 2159 ntTSL 5 BASIC18.41■□□□□ 0.54
CLDN9O95484 ATRN-201ENST00000262919 8633 ntAPPRIS P4 TSL 5 BASIC18.41■□□□□ 0.54
CLDN9O95484 GALNT2-201ENST00000366672 4454 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
CLDN9O95484 PCDH1-201ENST00000287008 4793 ntAPPRIS P3 TSL 5 BASIC18.41■□□□□ 0.54
CLDN9O95484 PHF2-202ENST00000375376 3045 ntTSL 5 BASIC18.41■□□□□ 0.54
CLDN9O95484 LRCH3-207ENST00000441090 2034 ntTSL 2 BASIC18.41■□□□□ 0.54
CLDN9O95484 PIP4K2A-202ENST00000376573 3802 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
CLDN9O95484 NUDT8-202ENST00000376693 728 ntAPPRIS ALT2 TSL 2 BASIC18.41■□□□□ 0.54
CLDN9O95484 PSMG1-202ENST00000380900 907 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
CLDN9O95484 UBE2F-203ENST00000409633 837 ntTSL 3 BASIC18.41■□□□□ 0.54
CLDN9O95484 POU5F1P3-201ENST00000428824 1078 ntBASIC18.41■□□□□ 0.54
CLDN9O95484 Z85996.1-201ENST00000494644 937 ntBASIC18.41■□□□□ 0.54
CLDN9O95484 SPINK2-202ENST00000504762 659 ntAPPRIS ALT2 TSL 2 BASIC18.41■□□□□ 0.54
CLDN9O95484 GLRB-205ENST00000512619 728 ntTSL 3 BASIC18.41■□□□□ 0.54
CLDN9O95484 CLN6-206ENST00000565471 1075 ntTSL 2 BASIC18.41■□□□□ 0.54
CLDN9O95484 MIR4651-201ENST00000582622 73 ntBASIC18.41■□□□□ 0.54
CLDN9O95484 KRTAP5-11-203ENST00000617152 558 ntAPPRIS ALT2 TSL 5 BASIC18.41■□□□□ 0.54
CLDN9O95484 TMEM129-202ENST00000382936 2810 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
CLDN9O95484 NFKBIZ-201ENST00000326151 2058 ntTSL 2 BASIC18.41■□□□□ 0.54
CLDN9O95484 CYP46A1-202ENST00000380228 1597 ntTSL 2 BASIC18.41■□□□□ 0.54
CLDN9O95484 TCTN1-223ENST00000550703 2149 ntTSL 2 BASIC18.41■□□□□ 0.54
CLDN9O95484 TM9SF1-206ENST00000528669 2425 ntTSL 5 BASIC18.41■□□□□ 0.54
CLDN9O95484 ARHGAP11A-208ENST00000567348 2422 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
CLDN9O95484 KRT16-201ENST00000301653 1644 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
CLDN9O95484 NFATC1-201ENST00000253506 4642 ntAPPRIS P3 TSL 1 (best) BASIC18.41■□□□□ 0.54
CLDN9O95484 EDA-208ENST00000524573 1381 ntAPPRIS ALT1 TSL 1 (best) BASIC18.41■□□□□ 0.54
CLDN9O95484 HOXA13-201ENST00000222753 5030 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
CLDN9O95484 RBFOX1-204ENST00000422070 1684 ntTSL 2 BASIC18.41■□□□□ 0.54
CLDN9O95484 CDK13-207ENST00000613626 3099 ntTSL 5 BASIC18.41■□□□□ 0.54
CLDN9O95484 MAPK8IP3-216ENST00000610761 5626 ntAPPRIS ALT1 TSL 1 (best) BASIC18.41■□□□□ 0.54
CLDN9O95484 NDRG2-227ENST00000554143 1980 ntAPPRIS ALT1 TSL 2 BASIC18.41■□□□□ 0.54
CLDN9O95484 KBTBD2-201ENST00000304056 3745 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
CLDN9O95484 MAPK9-208ENST00000455781 4336 ntAPPRIS ALT1 TSL 2 BASIC18.4■□□□□ 0.54
CLDN9O95484 CDC42EP2-201ENST00000279249 2023 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
CLDN9O95484 DOLPP1-203ENST00000406974 2037 ntTSL 2 BASIC18.4■□□□□ 0.54
CLDN9O95484 AL031598.1-201ENST00000561511 1773 ntBASIC18.4■□□□□ 0.54
CLDN9O95484 Z98044.1-201ENST00000632503 1764 ntBASIC18.4■□□□□ 0.54
CLDN9O95484 FA2H-201ENST00000219368 2424 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
CLDN9O95484 CCDC34-201ENST00000317945 2109 ntAPPRIS P3 TSL 1 (best) BASIC18.4■□□□□ 0.54
CLDN9O95484 RABEPK-202ENST00000373538 1504 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
CLDN9O95484 DMD-208ENST00000378680 1858 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
CLDN9O95484 USP25-204ENST00000400183 5341 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
CLDN9O95484 FKRP-202ENST00000391909 2801 ntAPPRIS P1 TSL 2 BASIC18.4■□□□□ 0.54
CLDN9O95484 TMEM214-203ENST00000404032 2830 ntTSL 2 BASIC18.4■□□□□ 0.54
CLDN9O95484 PSRC1-202ENST00000369904 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
CLDN9O95484 EGFR-202ENST00000342916 2239 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
CLDN9O95484 MTFP1-202ENST00000355143 891 ntTSL 2 BASIC18.4■□□□□ 0.54
CLDN9O95484 C7orf50-201ENST00000357429 1294 ntAPPRIS P2 TSL 1 (best) BASIC18.4■□□□□ 0.54
CLDN9O95484 INS-203ENST00000397262 639 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
CLDN9O95484 CCT7-202ENST00000398422 1234 ntTSL 2 BASIC18.4■□□□□ 0.54
CLDN9O95484 NME6-209ENST00000442597 757 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
CLDN9O95484 A3GALT2-201ENST00000442999 1023 ntAPPRIS P1 TSL 5 BASIC18.4■□□□□ 0.54
CLDN9O95484 C1QBPP2-201ENST00000528754 825 ntBASIC18.4■□□□□ 0.54
CLDN9O95484 AC131212.4-201ENST00000623606 975 ntBASIC18.4■□□□□ 0.54
CLDN9O95484 NKD2-201ENST00000274150 1940 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
CLDN9O95484 WRNIP1-202ENST00000380769 3239 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
CLDN9O95484 NUTM2D-201ENST00000381697 3290 ntAPPRIS P5 TSL 1 (best) BASIC18.4■□□□□ 0.54
CLDN9O95484 AC008878.3-201ENST00000617428 4964 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
CLDN9O95484 SLC29A4-202ENST00000396872 5685 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
CLDN9O95484 WAC-205ENST00000375664 5924 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
CLDN9O95484 AIPL1-209ENST00000575265 2111 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
CLDN9O95484 FAM228A-201ENST00000295150 1774 ntAPPRIS P2 TSL 1 (best) BASIC18.4■□□□□ 0.54
CLDN9O95484 TMEM235-203ENST00000550981 1786 ntTSL 2 BASIC18.4■□□□□ 0.54
CLDN9O95484 BTNL9-210ENST00000515271 1444 ntTSL 2 BASIC18.4■□□□□ 0.54
CLDN9O95484 PLEKHG5-207ENST00000400913 4698 ntAPPRIS P3 TSL 5 BASIC18.4■□□□□ 0.54
CLDN9O95484 FAM213A-206ENST00000615554 2213 ntAPPRIS P1 TSL 5 BASIC18.39■□□□□ 0.54
CLDN9O95484 TMC5-203ENST00000396229 4917 ntAPPRIS ALT2 TSL 5 BASIC18.39■□□□□ 0.54
CLDN9O95484 CD72-201ENST00000259633 1548 ntAPPRIS P2 TSL 1 (best) BASIC18.39■□□□□ 0.54
CLDN9O95484 TH-202ENST00000333684 1535 ntTSL 1 (best) BASIC18.39■□□□□ 0.54
CLDN9O95484 CBX1-202ENST00000393408 2422 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
CLDN9O95484 SNX11-203ENST00000452859 1601 ntTSL 2 BASIC18.39■□□□□ 0.53
CLDN9O95484 BAIAP2-204ENST00000428708 2095 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
CLDN9O95484 KRT13-202ENST00000336861 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
CLDN9O95484 LARGE2-202ENST00000401752 2516 ntAPPRIS P3 TSL 1 (best) BASIC18.39■□□□□ 0.53
CLDN9O95484 NIFKP9-201ENST00000419265 221 ntBASIC18.39■□□□□ 0.53
CLDN9O95484 AP003501.2-201ENST00000524433 477 ntTSL 4 BASIC18.39■□□□□ 0.53
CLDN9O95484 AC006504.5-207ENST00000586220 487 ntTSL 2 BASIC18.39■□□□□ 0.53
CLDN9O95484 JADE2-211ENST00000612830 1251 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
CLDN9O95484 CCDC27-201ENST00000294600 2176 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
CLDN9O95484 PODXL2-201ENST00000342480 2186 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
CLDN9O95484 BID-205ENST00000399774 2167 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
CLDN9O95484 PPP2R5A-201ENST00000261461 3128 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
CLDN9O95484 AIRE-201ENST00000291582 2257 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
CLDN9O95484 TEPSIN-201ENST00000300714 2287 ntAPPRIS P2 TSL 1 (best) BASIC18.39■□□□□ 0.53
CLDN9O95484 AC020763.4-201ENST00000623414 4170 ntBASIC18.39■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 24.4 ms