Protein–RNA interactions for Protein: A0A087X0R7

SENP3-EIF4A1, SENP3-EIF4A1 readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SENP3-EIF4A1A0A087X0R7 ABCC6-209ENST00000640696 1893 ntTSL 5 BASIC25.68■■□□□ 1.7
SENP3-EIF4A1A0A087X0R7 ETFA-202ENST00000433983 1346 ntTSL 2 BASIC25.68■■□□□ 1.7
SENP3-EIF4A1A0A087X0R7 LZTS2-202ENST00000370223 2883 ntAPPRIS P1 TSL 1 (best) BASIC25.68■■□□□ 1.7
SENP3-EIF4A1A0A087X0R7 INAVA-202ENST00000413687 2197 ntAPPRIS P2 TSL 2 BASIC25.68■■□□□ 1.7
SENP3-EIF4A1A0A087X0R7 ORAI2-204ENST00000473939 2493 ntAPPRIS P1 TSL 1 (best) BASIC25.68■■□□□ 1.7
SENP3-EIF4A1A0A087X0R7 TBC1D7-202ENST00000356436 1116 ntAPPRIS P1 TSL 1 (best) BASIC25.68■■□□□ 1.7
SENP3-EIF4A1A0A087X0R7 MAPKAPK2-202ENST00000367103 2961 ntAPPRIS P1 TSL 1 (best) BASIC25.68■■□□□ 1.7
SENP3-EIF4A1A0A087X0R7 C5orf56-203ENST00000378953 942 ntAPPRIS ALT2 TSL 2 BASIC25.68■■□□□ 1.7
SENP3-EIF4A1A0A087X0R7 TBC1D7-204ENST00000379300 1276 ntAPPRIS P1 TSL 1 (best) BASIC25.68■■□□□ 1.7
SENP3-EIF4A1A0A087X0R7 KRTAP5-11-201ENST00000398530 1021 ntAPPRIS P2 BASIC25.68■■□□□ 1.7
SENP3-EIF4A1A0A087X0R7 CACYBP-202ENST00000405362 1059 ntTSL 5 BASIC25.68■■□□□ 1.7
SENP3-EIF4A1A0A087X0R7 B3GAT3-205ENST00000534026 1120 ntTSL 2 BASIC25.68■■□□□ 1.7
SENP3-EIF4A1A0A087X0R7 AC140479.4-201ENST00000561715 463 ntTSL 4 BASIC25.68■■□□□ 1.7
SENP3-EIF4A1A0A087X0R7 KRTAP5-11-203ENST00000617152 558 ntAPPRIS ALT2 TSL 5 BASIC25.68■■□□□ 1.7
SENP3-EIF4A1A0A087X0R7 SNRPN-207ENST00000554227 1763 ntTSL 5 BASIC25.68■■□□□ 1.7
SENP3-EIF4A1A0A087X0R7 FAM72C-202ENST00000584486 2297 ntAPPRIS P1 TSL 1 (best) BASIC25.68■■□□□ 1.7
SENP3-EIF4A1A0A087X0R7 FBXL18-203ENST00000453700 1932 ntAPPRIS ALT2 TSL 1 (best) BASIC25.68■■□□□ 1.7
SENP3-EIF4A1A0A087X0R7 TM9SF1-206ENST00000528669 2425 ntTSL 5 BASIC25.68■■□□□ 1.7
SENP3-EIF4A1A0A087X0R7 NOL3-204ENST00000564053 1592 ntAPPRIS ALT2 TSL 2 BASIC25.68■■□□□ 1.7
SENP3-EIF4A1A0A087X0R7 SLC22A17-211ENST00000637426 1563 ntAPPRIS ALT2 TSL 1 (best) BASIC25.68■■□□□ 1.7
SENP3-EIF4A1A0A087X0R7 ODF3L2-202ENST00000382696 1393 ntAPPRIS ALT2 TSL 1 (best) BASIC25.68■■□□□ 1.7
SENP3-EIF4A1A0A087X0R7 IDUA-201ENST00000247933 2163 ntAPPRIS P1 TSL 1 (best) BASIC25.68■■□□□ 1.7
SENP3-EIF4A1A0A087X0R7 EWSR1-208ENST00000414183 2189 ntAPPRIS P4 TSL 2 BASIC25.68■■□□□ 1.7
SENP3-EIF4A1A0A087X0R7 AKIRIN2-201ENST00000257787 1662 ntAPPRIS P1 TSL 1 (best) BASIC25.68■■□□□ 1.7
SENP3-EIF4A1A0A087X0R7 STARD3-209ENST00000544210 1666 ntTSL 2 BASIC25.68■■□□□ 1.7
SENP3-EIF4A1A0A087X0R7 TSG101-201ENST00000251968 1824 ntAPPRIS P1 TSL 1 (best) BASIC25.67■■□□□ 1.7
SENP3-EIF4A1A0A087X0R7 GLS-202ENST00000338435 4475 ntAPPRIS ALT1 TSL 1 (best) BASIC25.67■■□□□ 1.7
SENP3-EIF4A1A0A087X0R7 FA2H-201ENST00000219368 2424 ntAPPRIS P1 TSL 1 (best) BASIC25.67■■□□□ 1.7
SENP3-EIF4A1A0A087X0R7 NTRK1-206ENST00000524377 2432 ntAPPRIS P3 TSL 1 (best) BASIC25.67■■□□□ 1.7
SENP3-EIF4A1A0A087X0R7 ILKAP-201ENST00000254654 1490 ntAPPRIS P1 TSL 1 (best) BASIC25.67■■□□□ 1.7
SENP3-EIF4A1A0A087X0R7 AC093503.3-201ENST00000624917 2352 ntBASIC25.67■■□□□ 1.7
SENP3-EIF4A1A0A087X0R7 AKR1A1-201ENST00000351829 1166 ntAPPRIS P1 TSL 1 (best) BASIC25.67■■□□□ 1.7
SENP3-EIF4A1A0A087X0R7 IFI6-203ENST00000362020 828 ntAPPRIS ALT2 TSL 1 (best) BASIC25.67■■□□□ 1.7
SENP3-EIF4A1A0A087X0R7 ASMTL-202ENST00000381333 2035 ntAPPRIS ALT2 TSL 2 BASIC25.67■■□□□ 1.7
SENP3-EIF4A1A0A087X0R7 DHRS4L2-202ENST00000397071 1117 ntTSL 2 BASIC25.67■■□□□ 1.7
SENP3-EIF4A1A0A087X0R7 BX890604.1-205ENST00000425492 856 ntTSL 1 (best) BASIC25.67■■□□□ 1.7
SENP3-EIF4A1A0A087X0R7 KRT8P8-201ENST00000434750 1448 ntBASIC25.67■■□□□ 1.7
SENP3-EIF4A1A0A087X0R7 TUBB8P6-201ENST00000436895 1288 ntBASIC25.67■■□□□ 1.7
SENP3-EIF4A1A0A087X0R7 LMCD1-AS1-204ENST00000446281 932 ntTSL 5 BASIC25.67■■□□□ 1.7
SENP3-EIF4A1A0A087X0R7 HOXB-AS3-204ENST00000466037 522 ntTSL 3 BASIC25.67■■□□□ 1.7
SENP3-EIF4A1A0A087X0R7 WDR41-208ENST00000507029 1553 ntTSL 2 BASIC25.67■■□□□ 1.7
SENP3-EIF4A1A0A087X0R7 RPH3A-203ENST00000543106 2581 ntAPPRIS ALT2 TSL 2 BASIC25.67■■□□□ 1.7
SENP3-EIF4A1A0A087X0R7 SPON2-203ENST00000431380 1802 ntAPPRIS P1 TSL 5 BASIC25.67■■□□□ 1.7
SENP3-EIF4A1A0A087X0R7 AC233280.1-201ENST00000423600 1684 ntTSL 2 BASIC25.67■■□□□ 1.7
SENP3-EIF4A1A0A087X0R7 ZNF326-202ENST00000361911 1538 ntTSL 1 (best) BASIC25.67■■□□□ 1.7
SENP3-EIF4A1A0A087X0R7 SSC4D-201ENST00000275560 2801 ntAPPRIS P1 TSL 1 (best) BASIC25.67■■□□□ 1.7
SENP3-EIF4A1A0A087X0R7 ST3GAL4-217ENST00000534083 1919 ntAPPRIS ALT1 TSL 5 BASIC25.67■■□□□ 1.7
SENP3-EIF4A1A0A087X0R7 MARK1-202ENST00000366918 5169 ntTSL 1 (best) BASIC25.67■■□□□ 1.7
SENP3-EIF4A1A0A087X0R7 LRPPRC-202ENST00000409659 1610 ntTSL 5 BASIC25.66■■□□□ 1.7
SENP3-EIF4A1A0A087X0R7 C19orf84-202ENST00000574814 1318 ntAPPRIS P2 TSL 1 (best) BASIC25.66■■□□□ 1.7
SENP3-EIF4A1A0A087X0R7 UBE2K-201ENST00000261427 5245 ntAPPRIS P1 TSL 1 (best) BASIC25.66■■□□□ 1.7
SENP3-EIF4A1A0A087X0R7 GCOM1-202ENST00000380569 1846 ntAPPRIS P3 TSL 2 BASIC25.66■■□□□ 1.7
SENP3-EIF4A1A0A087X0R7 RPP25L-201ENST00000297613 1092 ntAPPRIS P1 TSL 2 BASIC25.66■■□□□ 1.7
SENP3-EIF4A1A0A087X0R7 ISG20-202ENST00000379224 540 ntTSL 3 BASIC25.66■■□□□ 1.7
SENP3-EIF4A1A0A087X0R7 LINC00894-209ENST00000458274 547 ntTSL 2 BASIC25.66■■□□□ 1.7
SENP3-EIF4A1A0A087X0R7 CHCHD10-202ENST00000484558 1171 ntTSL 1 (best) BASIC25.66■■□□□ 1.7
SENP3-EIF4A1A0A087X0R7 AL158152.2-201ENST00000602703 235 ntTSL 3 BASIC25.66■■□□□ 1.7
SENP3-EIF4A1A0A087X0R7 ANKDD1B-204ENST00000601380 2569 ntAPPRIS P1 TSL 5 BASIC25.66■■□□□ 1.7
SENP3-EIF4A1A0A087X0R7 YBX3-201ENST00000228251 1796 ntAPPRIS P3 TSL 1 (best) BASIC25.66■■□□□ 1.7
SENP3-EIF4A1A0A087X0R7 WIPF1-202ENST00000359761 2003 ntAPPRIS P2 TSL 1 (best) BASIC25.66■■□□□ 1.7
SENP3-EIF4A1A0A087X0R7 SUDS3-204ENST00000543473 4897 ntAPPRIS P1 TSL 1 (best) BASIC25.66■■□□□ 1.7
SENP3-EIF4A1A0A087X0R7 NOP14-202ENST00000398071 2535 ntAPPRIS ALT2 TSL 1 (best) BASIC25.66■■□□□ 1.7
SENP3-EIF4A1A0A087X0R7 KCNK6-201ENST00000263372 5722 ntAPPRIS P1 TSL 1 (best) BASIC25.66■■□□□ 1.7
SENP3-EIF4A1A0A087X0R7 CDHR5-201ENST00000349570 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC25.65■■□□□ 1.7
SENP3-EIF4A1A0A087X0R7 UPP1-201ENST00000331803 1932 ntAPPRIS P1 TSL 1 (best) BASIC25.65■■□□□ 1.7
SENP3-EIF4A1A0A087X0R7 MELTF-202ENST00000296351 1650 ntTSL 1 (best) BASIC25.65■■□□□ 1.7
SENP3-EIF4A1A0A087X0R7 ZBTB48-202ENST00000377674 2293 ntAPPRIS P1 TSL 1 (best) BASIC25.65■■□□□ 1.7
SENP3-EIF4A1A0A087X0R7 PDZD7-201ENST00000370215 2032 ntTSL 2 BASIC25.65■■□□□ 1.7
SENP3-EIF4A1A0A087X0R7 NTAN1-201ENST00000287706 1204 ntAPPRIS P1 TSL 1 (best) BASIC25.65■■□□□ 1.7
SENP3-EIF4A1A0A087X0R7 IFI6-201ENST00000339145 822 ntAPPRIS P4 TSL 2 BASIC25.65■■□□□ 1.7
SENP3-EIF4A1A0A087X0R7 KRT18P57-201ENST00000443599 1254 ntBASIC25.65■■□□□ 1.7
SENP3-EIF4A1A0A087X0R7 AC080075.1-201ENST00000469747 427 ntTSL 2 BASIC25.65■■□□□ 1.7
SENP3-EIF4A1A0A087X0R7 CMTM3-207ENST00000564060 824 ntTSL 2 BASIC25.65■■□□□ 1.7
SENP3-EIF4A1A0A087X0R7 CMTM3-211ENST00000565922 615 ntTSL 1 (best) BASIC25.65■■□□□ 1.7
SENP3-EIF4A1A0A087X0R7 AC007786.1-201ENST00000587859 709 ntTSL 2 BASIC25.65■■□□□ 1.7
SENP3-EIF4A1A0A087X0R7 RAB7A-201ENST00000265062 2244 ntAPPRIS P1 TSL 1 (best) BASIC25.65■■□□□ 1.7
SENP3-EIF4A1A0A087X0R7 PARD3-205ENST00000374773 3420 ntTSL 5 BASIC25.65■■□□□ 1.7
SENP3-EIF4A1A0A087X0R7 NR1H2-201ENST00000253727 1998 ntAPPRIS P2 TSL 1 (best) BASIC25.65■■□□□ 1.7
SENP3-EIF4A1A0A087X0R7 ATXN7L2-202ENST00000369870 2318 ntAPPRIS P1 TSL 1 (best) BASIC25.65■■□□□ 1.7
SENP3-EIF4A1A0A087X0R7 RNF139-201ENST00000303545 2637 ntAPPRIS P1 TSL 1 (best) BASIC25.65■■□□□ 1.7
SENP3-EIF4A1A0A087X0R7 C21orf91-203ENST00000400559 1593 ntAPPRIS ALT1 TSL 5 BASIC25.65■■□□□ 1.7
SENP3-EIF4A1A0A087X0R7 TNXA-203ENST00000507684 2038 ntBASIC25.64■■□□□ 1.7
SENP3-EIF4A1A0A087X0R7 FBXO28-202ENST00000424254 1334 ntTSL 1 (best) BASIC25.64■■□□□ 1.7
SENP3-EIF4A1A0A087X0R7 TRIM73-202ENST00000430211 1321 ntAPPRIS ALT2 TSL 2 BASIC25.64■■□□□ 1.7
SENP3-EIF4A1A0A087X0R7 LONRF1-208ENST00000533751 3043 ntTSL 5 BASIC25.64■■□□□ 1.7
SENP3-EIF4A1A0A087X0R7 PDE8A-202ENST00000339708 2663 ntAPPRIS ALT2 TSL 1 (best) BASIC25.64■■□□□ 1.7
SENP3-EIF4A1A0A087X0R7 KRT8-217ENST00000619952 2437 ntTSL 2 BASIC25.64■■□□□ 1.7
SENP3-EIF4A1A0A087X0R7 HCK-206ENST00000518730 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC25.64■■□□□ 1.7
SENP3-EIF4A1A0A087X0R7 UBL5-201ENST00000358666 513 ntAPPRIS P1 TSL 1 (best) BASIC25.64■■□□□ 1.7
SENP3-EIF4A1A0A087X0R7 MAP1LC3A-203ENST00000397709 698 ntAPPRIS P1 TSL 3 BASIC25.64■■□□□ 1.7
SENP3-EIF4A1A0A087X0R7 KRT18P48-201ENST00000434763 852 ntBASIC25.64■■□□□ 1.7
SENP3-EIF4A1A0A087X0R7 AL590666.2-201ENST00000448869 758 ntTSL 2 BASIC25.64■■□□□ 1.7
SENP3-EIF4A1A0A087X0R7 CHAC1-203ENST00000487220 853 ntTSL 3 BASIC25.64■■□□□ 1.7
SENP3-EIF4A1A0A087X0R7 FP475955.1-201ENST00000624937 553 ntTSL 4 BASIC25.64■■□□□ 1.7
SENP3-EIF4A1A0A087X0R7 GTPBP2-202ENST00000307126 2933 ntAPPRIS P1 TSL 1 (best) BASIC25.64■■□□□ 1.7
SENP3-EIF4A1A0A087X0R7 DUT-202ENST00000455976 1935 ntAPPRIS P1 TSL 1 (best) BASIC25.64■■□□□ 1.69
SENP3-EIF4A1A0A087X0R7 ROPN1-209ENST00000495093 1376 ntTSL 1 (best) BASIC25.64■■□□□ 1.69
SENP3-EIF4A1A0A087X0R7 SLC16A3-221ENST00000617373 2048 ntAPPRIS P1 TSL 5 BASIC25.64■■□□□ 1.69
SENP3-EIF4A1A0A087X0R7 SLC16A3-222ENST00000619321 2015 ntAPPRIS P1 TSL 5 BASIC25.64■■□□□ 1.69
SENP3-EIF4A1A0A087X0R7 MAP2K2-202ENST00000394867 1471 ntTSL 5 BASIC25.64■■□□□ 1.69
Retrieved 100 of 98,524 protein–RNA pairs in 30.8 ms