Protein–RNA interactions for Protein: Q9HD42

CHMP1A, Charged multivesicular body protein 1a, humanhuman

Predicted RBP Predictions only

Length 196 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1AQ9HD42 LAG3-201ENST00000203629 1974 ntAPPRIS P2 TSL 1 (best) BASIC16.42■□□□□ 0.22
CHMP1AQ9HD42 ARHGAP22-210ENST00000477708 1951 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
CHMP1AQ9HD42 MAFF-207ENST00000538999 2365 ntTSL 2 BASIC16.42■□□□□ 0.22
CHMP1AQ9HD42 EEF1D-225ENST00000529272 1311 ntAPPRIS ALT2 TSL 2 BASIC16.42■□□□□ 0.22
CHMP1AQ9HD42 KDELR3-201ENST00000216014 1728 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
CHMP1AQ9HD42 PKD1P5-201ENST00000532415 10291 ntBASIC16.42■□□□□ 0.22
CHMP1AQ9HD42 KLHDC4-201ENST00000270583 1886 ntAPPRIS P3 TSL 1 (best) BASIC16.42■□□□□ 0.22
CHMP1AQ9HD42 EPN2-212ENST00000575595 1491 ntTSL 2 BASIC16.42■□□□□ 0.22
CHMP1AQ9HD42 TCP11-201ENST00000244645 2018 ntAPPRIS P3 TSL 1 (best) BASIC16.41■□□□□ 0.22
CHMP1AQ9HD42 LRPPRC-202ENST00000409659 1610 ntTSL 5 BASIC16.41■□□□□ 0.22
CHMP1AQ9HD42 FAM222A-202ENST00000538780 3294 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
CHMP1AQ9HD42 ANKRD2-201ENST00000298808 1350 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
CHMP1AQ9HD42 RWDD4-206ENST00000512740 1393 ntTSL 5 BASIC16.41■□□□□ 0.22
CHMP1AQ9HD42 POLR3E-209ENST00000564209 2464 ntTSL 2 BASIC16.41■□□□□ 0.22
CHMP1AQ9HD42 CHTOP-204ENST00000368694 2096 ntAPPRIS P3 TSL 1 (best) BASIC16.41■□□□□ 0.22
CHMP1AQ9HD42 LONP1-215ENST00000593119 2918 ntTSL 2 BASIC16.41■□□□□ 0.22
CHMP1AQ9HD42 PLCB3-204ENST00000540288 4469 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
CHMP1AQ9HD42 PDLIM2-204ENST00000397760 1847 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
CHMP1AQ9HD42 NR1H2-201ENST00000253727 1998 ntAPPRIS P2 TSL 1 (best) BASIC16.41■□□□□ 0.22
CHMP1AQ9HD42 PLAC9-202ENST00000372267 472 ntAPPRIS ALT2 TSL 3 BASIC16.41■□□□□ 0.22
CHMP1AQ9HD42 KCNC4-204ENST00000438661 2953 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
CHMP1AQ9HD42 AL162430.1-201ENST00000480705 870 ntBASIC16.41■□□□□ 0.22
CHMP1AQ9HD42 WWTR1-AS1-203ENST00000495094 975 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
CHMP1AQ9HD42 BACE1-204ENST00000445823 1408 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
CHMP1AQ9HD42 SKP2-208ENST00000546211 1589 ntTSL 5 BASIC16.41■□□□□ 0.22
CHMP1AQ9HD42 EVI5L-201ENST00000270530 3855 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
CHMP1AQ9HD42 ADAMTS9-202ENST00000459780 2871 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
CHMP1AQ9HD42 EMX2-203ENST00000553456 2897 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
CHMP1AQ9HD42 AL031658.1-201ENST00000449519 2013 ntTSL 2 BASIC16.41■□□□□ 0.22
CHMP1AQ9HD42 SLC6A9-201ENST00000357730 2168 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
CHMP1AQ9HD42 AP1AR-202ENST00000309703 2337 ntAPPRIS ALT1 TSL 1 (best) BASIC16.41■□□□□ 0.22
CHMP1AQ9HD42 COX20-203ENST00000411948 2631 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
CHMP1AQ9HD42 ALKBH7-201ENST00000245812 1332 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
CHMP1AQ9HD42 CENPH-206ENST00000515001 1305 ntTSL 2 BASIC16.41■□□□□ 0.22
CHMP1AQ9HD42 CASTOR1-202ENST00000407689 1623 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
CHMP1AQ9HD42 FOXI3-201ENST00000428390 2804 ntAPPRIS P1 TSL 3 BASIC16.41■□□□□ 0.22
CHMP1AQ9HD42 TLK2-203ENST00000346027 3449 ntAPPRIS P3 TSL 1 (best) BASIC16.41■□□□□ 0.22
CHMP1AQ9HD42 SCRIB-203ENST00000377533 5108 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
CHMP1AQ9HD42 CTBP2-202ENST00000334808 2130 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
CHMP1AQ9HD42 CPEB2-207ENST00000507071 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
CHMP1AQ9HD42 POLD3-203ENST00000527458 2122 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
CHMP1AQ9HD42 ACTL6A-201ENST00000392662 1899 ntTSL 2 BASIC16.4■□□□□ 0.22
CHMP1AQ9HD42 AC018470.1-201ENST00000624790 3129 ntBASIC16.4■□□□□ 0.22
CHMP1AQ9HD42 ACSL4-201ENST00000340800 5333 ntAPPRIS P4 TSL 5 BASIC16.4■□□□□ 0.22
CHMP1AQ9HD42 NDUFA10-203ENST00000404554 1557 ntTSL 5 BASIC16.4■□□□□ 0.22
CHMP1AQ9HD42 AL445433.2-201ENST00000425113 2544 ntTSL 2 BASIC16.4■□□□□ 0.22
CHMP1AQ9HD42 RALGPS1-208ENST00000424082 2362 ntTSL 2 BASIC16.4■□□□□ 0.22
CHMP1AQ9HD42 CD55-201ENST00000314754 2220 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
CHMP1AQ9HD42 NEDD8-201ENST00000250495 708 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
CHMP1AQ9HD42 AC026271.2-201ENST00000428091 497 ntBASIC16.4■□□□□ 0.22
CHMP1AQ9HD42 SERP1-205ENST00000487153 657 ntTSL 4 BASIC16.4■□□□□ 0.22
CHMP1AQ9HD42 RRAS2-203ENST00000526063 970 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
CHMP1AQ9HD42 RRAS2-208ENST00000532814 982 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
CHMP1AQ9HD42 RPH3AL-203ENST00000536489 1235 ntTSL 2 BASIC16.4■□□□□ 0.22
CHMP1AQ9HD42 PHB2-213ENST00000546111 858 ntTSL 2 BASIC16.4■□□□□ 0.22
CHMP1AQ9HD42 BEAN1-AS1-201ENST00000564618 533 ntTSL 4 BASIC16.4■□□□□ 0.22
CHMP1AQ9HD42 ATRAID-208ENST00000611786 1256 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
CHMP1AQ9HD42 PGAP1-204ENST00000409475 2443 ntTSL 2 BASIC16.4■□□□□ 0.22
CHMP1AQ9HD42 PALM3-201ENST00000340790 2262 ntAPPRIS P2 TSL 5 BASIC16.4■□□□□ 0.22
CHMP1AQ9HD42 B3GNT9-201ENST00000449549 2917 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
CHMP1AQ9HD42 TJP1-201ENST00000346128 7950 ntAPPRIS P3 TSL 1 (best) BASIC16.4■□□□□ 0.22
CHMP1AQ9HD42 MORF4L1-215ENST00000559345 1468 ntTSL 2 BASIC16.4■□□□□ 0.22
CHMP1AQ9HD42 GMPPA-213ENST00000622191 1473 ntTSL 5 BASIC16.4■□□□□ 0.22
CHMP1AQ9HD42 MPZ-206ENST00000533357 1955 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
CHMP1AQ9HD42 TRMT2A-203ENST00000404751 2498 ntAPPRIS ALT2 TSL 2 BASIC16.4■□□□□ 0.22
CHMP1AQ9HD42 ANKS3-201ENST00000304283 2662 ntAPPRIS P1 TSL 2 BASIC16.4■□□□□ 0.22
CHMP1AQ9HD42 PTPA-206ENST00000358994 2664 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
CHMP1AQ9HD42 AL390961.4-201ENST00000623958 2535 ntBASIC16.4■□□□□ 0.22
CHMP1AQ9HD42 PRR5-ARHGAP8-201ENST00000352766 2043 ntAPPRIS P1 TSL 2 BASIC16.4■□□□□ 0.22
CHMP1AQ9HD42 MKRN4P-201ENST00000444706 1521 ntBASIC16.4■□□□□ 0.22
CHMP1AQ9HD42 PRDM11-201ENST00000424263 1858 ntAPPRIS P3 TSL 2 BASIC16.39■□□□□ 0.22
CHMP1AQ9HD42 CENPN-201ENST00000299572 1398 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
CHMP1AQ9HD42 KRT87P-201ENST00000529785 1700 ntTSL 2 BASIC16.39■□□□□ 0.21
CHMP1AQ9HD42 SPNS1-204ENST00000352260 1948 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
CHMP1AQ9HD42 SETD7-202ENST00000404104 1590 ntTSL 2 BASIC16.39■□□□□ 0.21
CHMP1AQ9HD42 SEPT7-206ENST00000435235 1584 ntTSL 2 BASIC16.39■□□□□ 0.21
CHMP1AQ9HD42 CYP2E1-205ENST00000463117 1912 ntAPPRIS P1 TSL 5 BASIC16.39■□□□□ 0.21
CHMP1AQ9HD42 AC116351.2-201ENST00000606540 1585 ntBASIC16.39■□□□□ 0.21
CHMP1AQ9HD42 ANKRD10-201ENST00000267339 2495 ntAPPRIS P1 TSL 2 BASIC16.39■□□□□ 0.21
CHMP1AQ9HD42 CHRND-201ENST00000258385 2112 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
CHMP1AQ9HD42 RAB11FIP5-205ENST00000486777 6120 ntTSL 5 BASIC16.39■□□□□ 0.21
CHMP1AQ9HD42 SHF-201ENST00000290894 2500 ntAPPRIS P3 TSL 2 BASIC16.39■□□□□ 0.21
CHMP1AQ9HD42 FENDRR-203ENST00000595886 3095 ntTSL 2 BASIC16.39■□□□□ 0.21
CHMP1AQ9HD42 FIP1L1-202ENST00000337488 2198 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
CHMP1AQ9HD42 LINC01117-201ENST00000443670 699 ntTSL 5 BASIC16.39■□□□□ 0.21
CHMP1AQ9HD42 ZNF263-205ENST00000574253 1139 ntTSL 2 BASIC16.39■□□□□ 0.21
CHMP1AQ9HD42 AC000035.1-201ENST00000634116 343 ntTSL 5 BASIC16.39■□□□□ 0.21
CHMP1AQ9HD42 C18orf63-201ENST00000579455 5127 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
CHMP1AQ9HD42 FAM57A-201ENST00000301324 2013 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
CHMP1AQ9HD42 LRCH3-207ENST00000441090 2034 ntTSL 2 BASIC16.39■□□□□ 0.21
CHMP1AQ9HD42 MIF-AS1-201ENST00000406213 1476 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
CHMP1AQ9HD42 TBXA2R-202ENST00000411851 1494 ntTSL 2 BASIC16.39■□□□□ 0.21
CHMP1AQ9HD42 ARHGEF19-201ENST00000270747 3029 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
CHMP1AQ9HD42 KCNA2-206ENST00000638477 1524 ntTSL 5 BASIC16.39■□□□□ 0.21
CHMP1AQ9HD42 PDE8A-202ENST00000339708 2663 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
CHMP1AQ9HD42 MICU2-201ENST00000382374 1920 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
CHMP1AQ9HD42 PIGQ-204ENST00000409527 1915 ntAPPRIS P1 TSL 2 BASIC16.39■□□□□ 0.21
CHMP1AQ9HD42 CROCCP3-202ENST00000420820 1947 ntBASIC16.39■□□□□ 0.21
CHMP1AQ9HD42 ZDHHC8-202ENST00000334554 5046 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
CHMP1AQ9HD42 LCORL-203ENST00000382226 5009 ntAPPRIS P2 TSL 5 BASIC16.39■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 23.1 ms