Protein–RNA interactions for Protein: Q7Z6J0

SH3RF1, E3 ubiquitin-protein ligase SH3RF1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SH3RF1Q7Z6J0 THAP7-AS1-203ENST00000452284 2298 ntTSL 2 BASIC21.87■■□□□ 1.09
SH3RF1Q7Z6J0 PTRH1-204ENST00000419060 2692 ntAPPRIS P1 TSL 2 BASIC21.87■■□□□ 1.09
SH3RF1Q7Z6J0 LGALS12-203ENST00000394618 1618 ntAPPRIS P3 TSL 1 (best) BASIC21.87■■□□□ 1.09
SH3RF1Q7Z6J0 P2RX5-202ENST00000345901 2031 ntTSL 5 BASIC21.87■■□□□ 1.09
SH3RF1Q7Z6J0 TRIM58-201ENST00000366481 3225 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
SH3RF1Q7Z6J0 AC008060.1-201ENST00000401499 1551 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
SH3RF1Q7Z6J0 PCDHA4-201ENST00000378125 2328 ntTSL 5 BASIC21.86■■□□□ 1.09
SH3RF1Q7Z6J0 CHTOP-204ENST00000368694 2096 ntAPPRIS P3 TSL 1 (best) BASIC21.86■■□□□ 1.09
SH3RF1Q7Z6J0 MEN1-208ENST00000394374 3155 ntAPPRIS P3 TSL 5 BASIC21.86■■□□□ 1.09
SH3RF1Q7Z6J0 PTBP1-220ENST00000627714 2201 ntTSL 5 BASIC21.86■■□□□ 1.09
SH3RF1Q7Z6J0 NPY-202ENST00000405982 565 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
SH3RF1Q7Z6J0 COPS8-203ENST00000409334 794 ntTSL 5 BASIC21.86■■□□□ 1.09
SH3RF1Q7Z6J0 AC007731.5-201ENST00000429594 644 ntAPPRIS P1 TSL 5 BASIC21.86■■□□□ 1.09
SH3RF1Q7Z6J0 KRT18P48-201ENST00000434763 852 ntBASIC21.86■■□□□ 1.09
SH3RF1Q7Z6J0 KLHL21-204ENST00000467612 1056 ntTSL 3 BASIC21.86■■□□□ 1.09
SH3RF1Q7Z6J0 AC022509.3-202ENST00000545819 566 ntTSL 3 BASIC21.86■■□□□ 1.09
SH3RF1Q7Z6J0 RNF165-206ENST00000590330 1049 ntTSL 2 BASIC21.86■■□□□ 1.09
SH3RF1Q7Z6J0 GABBR2-201ENST00000259455 5788 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
SH3RF1Q7Z6J0 KMT5C-201ENST00000255613 2308 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
SH3RF1Q7Z6J0 MARK2-202ENST00000361128 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC21.86■■□□□ 1.09
SH3RF1Q7Z6J0 MARC2-202ENST00000366913 2134 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
SH3RF1Q7Z6J0 SLC7A10-201ENST00000253188 1946 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
SH3RF1Q7Z6J0 ASGR1-208ENST00000574388 1552 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
SH3RF1Q7Z6J0 CAMKK1-202ENST00000348335 3563 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
SH3RF1Q7Z6J0 IMMP2L-202ENST00000405709 1522 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
SH3RF1Q7Z6J0 MEN1-209ENST00000394376 3034 ntAPPRIS P3 TSL 5 BASIC21.85■■□□□ 1.09
SH3RF1Q7Z6J0 PRKAR2A-206ENST00000454963 1849 ntAPPRIS P1 TSL 2 BASIC21.85■■□□□ 1.09
SH3RF1Q7Z6J0 COX7A1-201ENST00000292907 762 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
SH3RF1Q7Z6J0 ISCA1-202ENST00000326094 1264 ntTSL 3 BASIC21.85■■□□□ 1.09
SH3RF1Q7Z6J0 C9orf129-201ENST00000375419 1154 ntAPPRIS P1 TSL 5 BASIC21.85■■□□□ 1.09
SH3RF1Q7Z6J0 RNF152P1-201ENST00000397754 604 ntBASIC21.85■■□□□ 1.09
SH3RF1Q7Z6J0 LINC00421-201ENST00000413833 1054 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
SH3RF1Q7Z6J0 LINC01381-201ENST00000431650 466 ntTSL 3 BASIC21.85■■□□□ 1.09
SH3RF1Q7Z6J0 LINC01293-201ENST00000453951 1266 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
SH3RF1Q7Z6J0 AC009185.1-201ENST00000517634 911 ntTSL 3 BASIC21.85■■□□□ 1.09
SH3RF1Q7Z6J0 SLC6A6-208ENST00000621751 1252 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
SH3RF1Q7Z6J0 AL138966.2-201ENST00000621997 464 ntBASIC21.85■■□□□ 1.09
SH3RF1Q7Z6J0 SPHK1-207ENST00000590959 1851 ntAPPRIS ALT2 TSL 1 (best) BASIC21.85■■□□□ 1.09
SH3RF1Q7Z6J0 UBE2K-203ENST00000445950 2175 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
SH3RF1Q7Z6J0 LAPTM4B-204ENST00000619747 2758 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
SH3RF1Q7Z6J0 GGT6-202ENST00000381550 2145 ntTSL 2 BASIC21.85■■□□□ 1.09
SH3RF1Q7Z6J0 NHLH2-201ENST00000320238 2512 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
SH3RF1Q7Z6J0 MON1A-202ENST00000417270 2527 ntAPPRIS ALT2 TSL 5 BASIC21.84■■□□□ 1.09
SH3RF1Q7Z6J0 SMAD7-201ENST00000262158 3087 ntAPPRIS P3 TSL 1 (best) BASIC21.84■■□□□ 1.09
SH3RF1Q7Z6J0 DMWD-201ENST00000270223 3305 ntAPPRIS P2 TSL 1 (best) BASIC21.84■■□□□ 1.09
SH3RF1Q7Z6J0 CCNO-201ENST00000282572 1433 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
SH3RF1Q7Z6J0 PSMD6-201ENST00000295901 1430 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
SH3RF1Q7Z6J0 TWF2-203ENST00000499914 1440 ntTSL 5 BASIC21.84■■□□□ 1.09
SH3RF1Q7Z6J0 NAGPA-AS1-202ENST00000632058 2265 ntTSL 2 BASIC21.84■■□□□ 1.09
SH3RF1Q7Z6J0 BAD-201ENST00000309032 929 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
SH3RF1Q7Z6J0 RXFP4-201ENST00000368318 1240 ntAPPRIS P1 BASIC21.84■■□□□ 1.09
SH3RF1Q7Z6J0 AC004980.1-204ENST00000429707 299 ntBASIC21.84■■□□□ 1.09
SH3RF1Q7Z6J0 DUSP5P1-201ENST00000441325 1139 ntBASIC21.84■■□□□ 1.09
SH3RF1Q7Z6J0 AC005906.2-206ENST00000638180 1029 ntTSL 5 BASIC21.84■■□□□ 1.09
SH3RF1Q7Z6J0 AP000550.4-202ENST00000639755 178 ntBASIC21.84■■□□□ 1.09
SH3RF1Q7Z6J0 LGR4-201ENST00000379214 5206 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
SH3RF1Q7Z6J0 SLC5A10-205ENST00000417251 1984 ntTSL 2 BASIC21.84■■□□□ 1.09
SH3RF1Q7Z6J0 TRA2A-201ENST00000297071 1845 ntAPPRIS P3 TSL 1 (best) BASIC21.84■■□□□ 1.09
SH3RF1Q7Z6J0 MAP3K11-210ENST00000532507 1812 ntTSL 2 BASIC21.84■■□□□ 1.09
SH3RF1Q7Z6J0 SOCS2-206ENST00000549122 2391 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
SH3RF1Q7Z6J0 SAMD11-211ENST00000616125 2230 ntAPPRIS ALT2 TSL 5 BASIC21.84■■□□□ 1.09
SH3RF1Q7Z6J0 DOC2A-209ENST00000564979 1630 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
SH3RF1Q7Z6J0 ASMTL-201ENST00000381317 2027 ntAPPRIS P3 TSL 1 (best) BASIC21.84■■□□□ 1.09
SH3RF1Q7Z6J0 ASMTL-202ENST00000381333 2035 ntAPPRIS ALT2 TSL 2 BASIC21.84■■□□□ 1.09
SH3RF1Q7Z6J0 STX17-212ENST00000534052 2424 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
SH3RF1Q7Z6J0 EGFL7-203ENST00000371699 2125 ntAPPRIS P1 TSL 2 BASIC21.83■■□□□ 1.09
SH3RF1Q7Z6J0 PIK3R1-201ENST00000320694 2625 ntTSL 1 (best) BASIC21.83■■□□□ 1.09
SH3RF1Q7Z6J0 ADORA2A-215ENST00000618076 2630 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
SH3RF1Q7Z6J0 TSPAN15-201ENST00000373290 1698 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
SH3RF1Q7Z6J0 CYP2E1-205ENST00000463117 1912 ntAPPRIS P1 TSL 5 BASIC21.83■■□□□ 1.09
SH3RF1Q7Z6J0 KRTAP5-11-201ENST00000398530 1021 ntAPPRIS P2 BASIC21.83■■□□□ 1.09
SH3RF1Q7Z6J0 TARBP2-220ENST00000552857 916 ntTSL 5 BASIC21.83■■□□□ 1.09
SH3RF1Q7Z6J0 P3H4-201ENST00000355468 2791 ntAPPRIS P2 TSL 2 BASIC21.83■■□□□ 1.08
SH3RF1Q7Z6J0 PCID2-202ENST00000337344 1898 ntAPPRIS P1 TSL 2 BASIC21.83■■□□□ 1.08
SH3RF1Q7Z6J0 TRMU-202ENST00000381019 1381 ntTSL 1 (best) BASIC21.83■■□□□ 1.08
SH3RF1Q7Z6J0 GAS6-201ENST00000327773 2490 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.08
SH3RF1Q7Z6J0 NR1H2-201ENST00000253727 1998 ntAPPRIS P2 TSL 1 (best) BASIC21.83■■□□□ 1.08
SH3RF1Q7Z6J0 MCIDAS-201ENST00000513312 1736 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.08
SH3RF1Q7Z6J0 HEMK1-206ENST00000455834 1499 ntAPPRIS P1 TSL 5 BASIC21.83■■□□□ 1.08
SH3RF1Q7Z6J0 VAV1-201ENST00000304076 2825 ntTSL 1 (best) BASIC21.83■■□□□ 1.08
SH3RF1Q7Z6J0 WHAMM-201ENST00000286760 5101 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.08
SH3RF1Q7Z6J0 PODNL1-203ENST00000538371 1826 ntAPPRIS ALT2 TSL 2 BASIC21.83■■□□□ 1.08
SH3RF1Q7Z6J0 AC004982.2-201ENST00000609497 1578 ntTSL 2 BASIC21.82■■□□□ 1.08
SH3RF1Q7Z6J0 TATDN2-201ENST00000287652 5342 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
SH3RF1Q7Z6J0 SLC12A2-201ENST00000262461 6885 ntAPPRIS P3 TSL 1 (best) BASIC21.82■■□□□ 1.08
SH3RF1Q7Z6J0 LINC01465-201ENST00000408887 1940 ntBASIC21.82■■□□□ 1.08
SH3RF1Q7Z6J0 MYC-201ENST00000259523 2042 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
SH3RF1Q7Z6J0 CAPN1-226ENST00000533820 3083 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
SH3RF1Q7Z6J0 PNCK-201ENST00000340888 1508 ntAPPRIS P1 TSL 5 BASIC21.82■■□□□ 1.08
SH3RF1Q7Z6J0 PRKCSH-209ENST00000589838 1898 ntAPPRIS P3 TSL 1 (best) BASIC21.82■■□□□ 1.08
SH3RF1Q7Z6J0 PLPBP-201ENST00000328195 2558 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
SH3RF1Q7Z6J0 MAGI2-217ENST00000629359 6704 ntTSL 5 BASIC21.82■■□□□ 1.08
SH3RF1Q7Z6J0 SYNE4-202ENST00000340477 1004 ntAPPRIS ALT2 TSL 1 (best) BASIC21.82■■□□□ 1.08
SH3RF1Q7Z6J0 AC012618.3-202ENST00000440004 472 ntTSL 4 BASIC21.82■■□□□ 1.08
SH3RF1Q7Z6J0 CHCHD3-203ENST00000448878 1038 ntTSL 5 BASIC21.82■■□□□ 1.08
SH3RF1Q7Z6J0 YBX1P2-201ENST00000489612 999 ntBASIC21.82■■□□□ 1.08
SH3RF1Q7Z6J0 MOK-234ENST00000524370 1165 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
SH3RF1Q7Z6J0 PSMD9-208ENST00000542602 516 ntTSL 3 BASIC21.82■■□□□ 1.08
SH3RF1Q7Z6J0 PSMD8-202ENST00000585598 541 ntTSL 5 BASIC21.82■■□□□ 1.08
SH3RF1Q7Z6J0 CROCCP4-202ENST00000633627 573 ntTSL 3 BASIC21.82■■□□□ 1.08
Retrieved 100 of 98,524 protein–RNA pairs in 26.3 ms