Protein–RNA interactions for Protein: P53621

COPA, Coatomer subunit alpha, humanhuman

Predictions only

Length 1,224 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COPAP53621 CPEB1-214ENST00000617522 2220 ntTSL 5 BASIC19.67■□□□□ 0.74
COPAP53621 PTGER3-209ENST00000460330 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC19.67■□□□□ 0.74
COPAP53621 WNT10B-201ENST00000301061 2274 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
COPAP53621 CENPA-201ENST00000233505 1299 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
COPAP53621 POMZP3-201ENST00000275569 1259 ntTSL 2 BASIC19.66■□□□□ 0.74
COPAP53621 TSPY14P-201ENST00000303979 915 ntBASIC19.66■□□□□ 0.74
COPAP53621 TMEM88B-201ENST00000378821 492 ntAPPRIS P1 TSL 2 BASIC19.66■□□□□ 0.74
COPAP53621 CRYGFP-201ENST00000418459 633 ntBASIC19.66■□□□□ 0.74
COPAP53621 PTPA-216ENST00000432651 857 ntTSL 2 BASIC19.66■□□□□ 0.74
COPAP53621 AC134772.1-201ENST00000438872 885 ntTSL 3 BASIC19.66■□□□□ 0.74
COPAP53621 AL365259.1-203ENST00000451660 707 ntTSL 3 BASIC19.66■□□□□ 0.74
COPAP53621 FDX2-206ENST00000492239 773 ntTSL 2 BASIC19.66■□□□□ 0.74
COPAP53621 KRT18P35-201ENST00000510488 1269 ntBASIC19.66■□□□□ 0.74
COPAP53621 C2orf69P3-201ENST00000565542 1120 ntBASIC19.66■□□□□ 0.74
COPAP53621 AL049597.2-201ENST00000565575 961 ntBASIC19.66■□□□□ 0.74
COPAP53621 AC126696.3-202ENST00000570159 553 ntTSL 5 BASIC19.66■□□□□ 0.74
COPAP53621 TPGS2-221ENST00000614939 1268 ntTSL 4 BASIC19.66■□□□□ 0.74
COPAP53621 SEPT2-203ENST00000391971 3315 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
COPAP53621 ACADVL-203ENST00000356839 2323 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
COPAP53621 DBNL-210ENST00000448521 1808 ntAPPRIS ALT1 TSL 1 (best) BASIC19.66■□□□□ 0.74
COPAP53621 STOML1-209ENST00000564777 1849 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
COPAP53621 MOK-225ENST00000522867 1883 ntTSL 5 BASIC19.66■□□□□ 0.74
COPAP53621 TRMU-201ENST00000290846 1940 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
COPAP53621 BCAP29-202ENST00000379117 1946 ntAPPRIS P1 TSL 5 BASIC19.66■□□□□ 0.74
COPAP53621 LTBP3-217ENST00000530785 2461 ntTSL 2 BASIC19.66■□□□□ 0.74
COPAP53621 ZNF394-203ENST00000426306 2017 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
COPAP53621 AC005332.7-201ENST00000614046 2005 ntBASIC19.66■□□□□ 0.74
COPAP53621 TM7SF3-201ENST00000343028 2709 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
COPAP53621 NPR3-204ENST00000434067 2715 ntTSL 5 BASIC19.66■□□□□ 0.74
COPAP53621 WT1-205ENST00000452863 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
COPAP53621 SNAP91-211ENST00000520213 2168 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
COPAP53621 ACAA1-209ENST00000450296 1570 ntTSL 5 BASIC19.66■□□□□ 0.74
COPAP53621 WNT7B-204ENST00000410089 2202 ntTSL 5 BASIC19.66■□□□□ 0.74
COPAP53621 UBXN11-201ENST00000314675 2254 ntAPPRIS ALT2 TSL 2 BASIC19.65■□□□□ 0.74
COPAP53621 AC012414.5-201ENST00000564214 1602 ntTSL 5 BASIC19.65■□□□□ 0.74
COPAP53621 MED25-201ENST00000312865 2332 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
COPAP53621 GPRIN2-201ENST00000374314 1696 ntAPPRIS P1 BASIC19.65■□□□□ 0.74
COPAP53621 CCDC71-201ENST00000321895 1781 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
COPAP53621 WFIKKN1-201ENST00000319070 2028 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
COPAP53621 OXT-201ENST00000217386 513 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
COPAP53621 CDKN3-209ENST00000556102 938 ntTSL 5 BASIC19.65■□□□□ 0.74
COPAP53621 RBM42-202ENST00000586618 771 ntTSL 3 BASIC19.65■□□□□ 0.74
COPAP53621 AP000692.2-201ENST00000608391 879 ntBASIC19.65■□□□□ 0.74
COPAP53621 ST20-MTHFS-203ENST00000615374 679 ntAPPRIS P1 TSL 3 BASIC19.65■□□□□ 0.74
COPAP53621 NFATC1-217ENST00000591814 4819 ntAPPRIS ALT2 TSL 1 (best) BASIC19.65■□□□□ 0.74
COPAP53621 KCNC3-203ENST00000477616 3176 ntAPPRIS P2 TSL 1 (best) BASIC19.65■□□□□ 0.74
COPAP53621 PRKAG2-203ENST00000418337 2318 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
COPAP53621 KCNH2-202ENST00000330883 3267 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
COPAP53621 CACNA1A-246ENST00000637736 8340 ntAPPRIS ALT2 TSL 5 BASIC19.65■□□□□ 0.74
COPAP53621 TMEM25-203ENST00000354284 1456 ntTSL 2 BASIC19.65■□□□□ 0.74
COPAP53621 DMKN-207ENST00000419602 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC19.65■□□□□ 0.74
COPAP53621 SLC36A1-209ENST00000521925 1621 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
COPAP53621 KRT87P-201ENST00000529785 1700 ntTSL 2 BASIC19.65■□□□□ 0.74
COPAP53621 KLHDC4-203ENST00000347925 1821 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
COPAP53621 LINC00482-201ENST00000332012 2023 ntTSL 1 (best) BASIC19.64■□□□□ 0.74
COPAP53621 MARK1-202ENST00000366918 5169 ntTSL 1 (best) BASIC19.64■□□□□ 0.74
COPAP53621 SEMA3B-210ENST00000611067 2292 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.74
COPAP53621 PCDHGB3-202ENST00000618934 2445 ntAPPRIS P1 BASIC19.64■□□□□ 0.74
COPAP53621 SBNO2-201ENST00000361757 4923 ntAPPRIS P4 TSL 1 (best) BASIC19.64■□□□□ 0.73
COPAP53621 METTL5-201ENST00000260953 1010 ntAPPRIS P2 TSL 1 (best) BASIC19.64■□□□□ 0.73
COPAP53621 ZNF584-202ENST00000322834 1042 ntTSL 2 BASIC19.64■□□□□ 0.73
COPAP53621 AL035541.1-201ENST00000424850 823 ntTSL 2 BASIC19.64■□□□□ 0.73
COPAP53621 EGLN1P1-201ENST00000531623 762 ntBASIC19.64■□□□□ 0.73
COPAP53621 AC010203.1-204ENST00000548782 407 ntBASIC19.64■□□□□ 0.73
COPAP53621 CFL2-205ENST00000555765 632 ntTSL 2 BASIC19.64■□□□□ 0.73
COPAP53621 AC011298.2-201ENST00000617989 482 ntBASIC19.64■□□□□ 0.73
COPAP53621 ST3GAL3-205ENST00000347631 1324 ntTSL 5 BASIC19.64■□□□□ 0.73
COPAP53621 LGALS9C-209ENST00000581545 1378 ntTSL 5 BASIC19.64■□□□□ 0.73
COPAP53621 KRT8P8-201ENST00000434750 1448 ntBASIC19.64■□□□□ 0.73
COPAP53621 AP001271.2-201ENST00000624018 1556 ntBASIC19.64■□□□□ 0.73
COPAP53621 DENND1A-203ENST00000373624 5010 ntAPPRIS P4 TSL 5 BASIC19.64■□□□□ 0.73
COPAP53621 FGF17-201ENST00000359441 1714 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
COPAP53621 SSBP2-218ENST00000514493 1790 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
COPAP53621 CTBP2-205ENST00000411419 2036 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
COPAP53621 MATN4-202ENST00000360607 2127 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
COPAP53621 ACOT4-201ENST00000326303 2362 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
COPAP53621 CHRNB1-201ENST00000306071 2557 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
COPAP53621 PRPF39-201ENST00000355765 2868 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
COPAP53621 MAPKAPK2-202ENST00000367103 2961 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
COPAP53621 ARFRP1-208ENST00000612256 2974 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
COPAP53621 ANKDD1B-204ENST00000601380 2569 ntAPPRIS P1 TSL 5 BASIC19.63■□□□□ 0.73
COPAP53621 HTRA3-201ENST00000307358 2541 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
COPAP53621 ARHGAP28-203ENST00000383472 2295 ntAPPRIS ALT2 TSL 5 BASIC19.63■□□□□ 0.73
COPAP53621 NRXN1-208ENST00000405472 5724 ntAPPRIS ALT2 TSL 5 BASIC19.63■□□□□ 0.73
COPAP53621 EPHX1-201ENST00000272167 1660 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
COPAP53621 FUZ-201ENST00000313777 1675 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
COPAP53621 AC004890.2-202ENST00000463462 1494 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
COPAP53621 CAB39-203ENST00000410084 1324 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
COPAP53621 IZUMO2-201ENST00000293405 728 ntAPPRIS P2 TSL 1 (best) BASIC19.63■□□□□ 0.73
COPAP53621 TMIGD2-201ENST00000301272 1262 ntAPPRIS P3 TSL 1 (best) BASIC19.63■□□□□ 0.73
COPAP53621 SELENOF-202ENST00000370554 1220 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
COPAP53621 AC004951.3-201ENST00000418645 1148 ntBASIC19.63■□□□□ 0.73
COPAP53621 AL050404.1-201ENST00000424566 802 ntTSL 2 BASIC19.63■□□□□ 0.73
COPAP53621 AC103564.1-201ENST00000437330 562 ntTSL 5 BASIC19.63■□□□□ 0.73
COPAP53621 HMGB3P22-201ENST00000442010 597 ntTSL 2 BASIC19.63■□□□□ 0.73
COPAP53621 HRASLS5-205ENST00000539221 1167 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
COPAP53621 AC087498.1-201ENST00000572493 945 ntAPPRIS P1 BASIC19.63■□□□□ 0.73
COPAP53621 AC018521.5-202ENST00000577279 374 ntTSL 3 BASIC19.63■□□□□ 0.73
COPAP53621 AC018521.5-201ENST00000582787 496 ntTSL 2 BASIC19.63■□□□□ 0.73
COPAP53621 KAZN-209ENST00000636564 1197 ntTSL 5 BASIC19.63■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 23.6 ms