Protein–RNA interactions for Protein: P48431

SOX2, Transcription factor SOX-2, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX2P48431 DUSP1-201ENST00000239223 2019 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
SOX2P48431 STARD3-209ENST00000544210 1666 ntTSL 2 BASIC16.79■□□□□ 0.28
SOX2P48431 PIF1-205ENST00000559239 2677 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
SOX2P48431 KIF1BP-204ENST00000626493 2337 ntTSL 5 BASIC16.79■□□□□ 0.28
SOX2P48431 EDA-204ENST00000374553 5272 ntAPPRIS ALT1 TSL 1 (best) BASIC16.79■□□□□ 0.28
SOX2P48431 ANKRD18DP-204ENST00000455355 1975 ntBASIC16.79■□□□□ 0.28
SOX2P48431 SEMA3D-202ENST00000444867 1605 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
SOX2P48431 NUMBL-202ENST00000540131 1931 ntAPPRIS ALT2 TSL 2 BASIC16.79■□□□□ 0.28
SOX2P48431 RRAS-201ENST00000246792 1044 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
SOX2P48431 CNIH4-203ENST00000366858 702 ntTSL 3 BASIC16.79■□□□□ 0.28
SOX2P48431 HSD17B10-202ENST00000375298 823 ntTSL 3 BASIC16.79■□□□□ 0.28
SOX2P48431 METTL26-203ENST00000397664 604 ntTSL 2 BASIC16.79■□□□□ 0.28
SOX2P48431 BX276092.2-201ENST00000417668 665 ntBASIC16.79■□□□□ 0.28
SOX2P48431 C17orf74-202ENST00000574034 1287 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
SOX2P48431 MFSD14C-203ENST00000602917 786 ntAPPRIS P5 TSL 1 (best) BASIC16.79■□□□□ 0.28
SOX2P48431 MAPK14-210ENST00000622903 1003 ntTSL 5 BASIC16.79■□□□□ 0.28
SOX2P48431 AC006557.6-201ENST00000623071 864 ntBASIC16.79■□□□□ 0.28
SOX2P48431 AC135050.7-201ENST00000624508 2218 ntBASIC16.79■□□□□ 0.28
SOX2P48431 CFP-203ENST00000396992 1592 ntAPPRIS P2 TSL 1 (best) BASIC16.79■□□□□ 0.28
SOX2P48431 TMC6-203ENST00000392467 2833 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
SOX2P48431 TLK2-203ENST00000346027 3449 ntAPPRIS P3 TSL 1 (best) BASIC16.79■□□□□ 0.28
SOX2P48431 ZNF74-203ENST00000403682 2789 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
SOX2P48431 MGLL-204ENST00000434178 4941 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
SOX2P48431 HSD11B1L-219ENST00000581893 1540 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
SOX2P48431 ZNF280D-205ENST00000559000 4726 ntAPPRIS ALT2 TSL 2 BASIC16.79■□□□□ 0.28
SOX2P48431 CDC42EP2-201ENST00000279249 2023 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
SOX2P48431 EPB41L2-211ENST00000525271 2568 ntTSL 2 BASIC16.79■□□□□ 0.28
SOX2P48431 MZF1-206ENST00000599369 2587 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
SOX2P48431 CCAR2-214ENST00000613179 1421 ntTSL 5 BASIC16.79■□□□□ 0.28
SOX2P48431 IFRD2-204ENST00000436390 2275 ntAPPRIS P1 TSL 2 BASIC16.79■□□□□ 0.28
SOX2P48431 GOLGA6L3-201ENST00000507199 1679 ntBASIC16.78■□□□□ 0.28
SOX2P48431 AC126773.2-201ENST00000562172 1682 ntTSL 3 BASIC16.78■□□□□ 0.28
SOX2P48431 SLC9A6-208ENST00000636206 4711 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
SOX2P48431 GTF3C5-201ENST00000342018 1905 ntTSL 5 BASIC16.78■□□□□ 0.28
SOX2P48431 IL4I1-202ENST00000391826 1863 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
SOX2P48431 PTGIR-201ENST00000291294 2107 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
SOX2P48431 KRT8-216ENST00000552551 2126 ntAPPRIS P1 TSL 2 BASIC16.78■□□□□ 0.28
SOX2P48431 ALKBH7-201ENST00000245812 1332 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
SOX2P48431 LTBP4-203ENST00000308370 4948 ntAPPRIS P4 TSL 1 (best) BASIC16.78■□□□□ 0.28
SOX2P48431 LINC00471-201ENST00000313064 1282 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
SOX2P48431 SULT1A1-202ENST00000350842 1282 ntTSL 3 BASIC16.78■□□□□ 0.28
SOX2P48431 RER1-204ENST00000378518 522 ntTSL 3 BASIC16.78■□□□□ 0.28
SOX2P48431 VSX1-206ENST00000444511 1197 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
SOX2P48431 YIF1A-205ENST00000471387 854 ntTSL 5 BASIC16.78■□□□□ 0.28
SOX2P48431 C5orf38-206ENST00000505778 509 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
SOX2P48431 TPD52L1-207ENST00000527711 999 ntTSL 2 BASIC16.78■□□□□ 0.28
SOX2P48431 AC005829.2-201ENST00000571422 1056 ntBASIC16.78■□□□□ 0.28
SOX2P48431 PTCRA-204ENST00000616441 1125 ntAPPRIS ALT2 TSL 2 BASIC16.78■□□□□ 0.28
SOX2P48431 KCNQ2-205ENST00000360480 2775 ntAPPRIS ALT2 TSL 5 BASIC16.78■□□□□ 0.28
SOX2P48431 DOC2B-203ENST00000613549 6048 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
SOX2P48431 CLUH-201ENST00000435359 5224 ntAPPRIS P2 TSL 5 BASIC16.78■□□□□ 0.28
SOX2P48431 BSG-201ENST00000333511 1974 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
SOX2P48431 AL512353.2-201ENST00000448759 1962 ntBASIC16.78■□□□□ 0.28
SOX2P48431 SNAI3-201ENST00000332281 1732 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
SOX2P48431 L1CAM-205ENST00000370060 5113 ntAPPRIS P4 TSL 5 BASIC16.78■□□□□ 0.28
SOX2P48431 PSMD6-201ENST00000295901 1430 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
SOX2P48431 PIK3R2-201ENST00000222254 4033 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
SOX2P48431 WNT8B-201ENST00000343737 2112 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
SOX2P48431 LGI4-201ENST00000310123 2814 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
SOX2P48431 NFKB2-201ENST00000189444 3011 ntAPPRIS ALT1 TSL 1 (best) BASIC16.78■□□□□ 0.28
SOX2P48431 KANK3-201ENST00000330915 2787 ntAPPRIS P2 TSL 1 (best) BASIC16.77■□□□□ 0.28
SOX2P48431 ORAI3-204ENST00000566237 1393 ntTSL 5 BASIC16.77■□□□□ 0.28
SOX2P48431 DNM1-211ENST00000627061 2724 ntTSL 5 BASIC16.77■□□□□ 0.28
SOX2P48431 YY1AP1-213ENST00000405763 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.28
SOX2P48431 GPRC5C-205ENST00000481232 1592 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
SOX2P48431 DBNL-219ENST00000490734 2004 ntTSL 2 BASIC16.77■□□□□ 0.28
SOX2P48431 AC093525.10-201ENST00000625130 1569 ntBASIC16.77■□□□□ 0.28
SOX2P48431 ALDH1A3-201ENST00000329841 3924 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
SOX2P48431 CCDC17-209ENST00000528266 2181 ntAPPRIS P3 TSL 2 BASIC16.77■□□□□ 0.28
SOX2P48431 COL27A1-201ENST00000356083 7790 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
SOX2P48431 HEXDC-201ENST00000327949 1733 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
SOX2P48431 B3GALNT1-202ENST00000392779 3221 ntAPPRIS P1 TSL 2 BASIC16.77■□□□□ 0.28
SOX2P48431 FAM87B-201ENST00000326734 1947 ntTSL 2 BASIC16.77■□□□□ 0.28
SOX2P48431 SLC35A3-217ENST00000639807 2767 ntTSL 5 BASIC16.77■□□□□ 0.28
SOX2P48431 OR2A1-AS1-201ENST00000462305 773 ntBASIC16.77■□□□□ 0.28
SOX2P48431 AC004889.1-204ENST00000474656 773 ntTSL 3 BASIC16.77■□□□□ 0.28
SOX2P48431 AC008443.6-201ENST00000512508 500 ntTSL 4 BASIC16.77■□□□□ 0.28
SOX2P48431 AC105036.2-201ENST00000569468 176 ntBASIC16.77■□□□□ 0.28
SOX2P48431 AC133552.2-202ENST00000575694 574 ntBASIC16.77■□□□□ 0.28
SOX2P48431 AP003774.1-201ENST00000316124 2340 ntTSL 2 BASIC16.77■□□□□ 0.28
SOX2P48431 TM7SF2-202ENST00000345348 1490 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
SOX2P48431 PLA2G7-201ENST00000274793 1882 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
SOX2P48431 ASIC3-202ENST00000349064 1895 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
SOX2P48431 ZNF395-211ENST00000523202 2068 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
SOX2P48431 PHF12-205ENST00000577226 7679 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
SOX2P48431 SMPD1-201ENST00000342245 2452 ntAPPRIS ALT1 TSL 1 (best) BASIC16.77■□□□□ 0.27
SOX2P48431 SYBU-201ENST00000276646 2870 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.27
SOX2P48431 HERPUD2-202ENST00000396081 3057 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
SOX2P48431 SUPT4H1-202ENST00000577396 1643 ntTSL 2 BASIC16.77■□□□□ 0.27
SOX2P48431 BCL2-202ENST00000398117 7461 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
SOX2P48431 KCNC4-203ENST00000413138 3018 ntAPPRIS ALT2 TSL 5 BASIC16.77■□□□□ 0.27
SOX2P48431 ARHGEF18-201ENST00000319670 5212 ntAPPRIS P3 TSL 1 (best) BASIC16.77■□□□□ 0.27
SOX2P48431 ING5-201ENST00000313552 5196 ntAPPRIS P3 TSL 1 (best) BASIC16.77■□□□□ 0.27
SOX2P48431 KCNA7-201ENST00000221444 4372 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
SOX2P48431 AMACR-206ENST00000502637 1598 ntTSL 5 BASIC16.77■□□□□ 0.27
SOX2P48431 CERS6-201ENST00000305747 7217 ntAPPRIS P3 TSL 2 BASIC16.76■□□□□ 0.27
SOX2P48431 PDE6B-202ENST00000429163 2120 ntTSL 2 BASIC16.76■□□□□ 0.27
SOX2P48431 DPAGT1-203ENST00000409993 3274 ntAPPRIS P1 TSL 2 BASIC16.76■□□□□ 0.27
SOX2P48431 TSGA10IP-203ENST00000532620 1925 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
SOX2P48431 IDH3G-202ENST00000370092 1712 ntTSL 5 BASIC16.76■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 48.8 ms