Protein–RNA interactions for Protein: O75940

SMNDC1, Survival of motor neuron-related-splicing factor 30, humanhuman

Known RBP eCLIP

Length 238 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMNDC1O75940 MAU2-209ENST00000587938 3695 ntTSL 510.1□□□□□ -0.791e-7■□□□□ 11
SMNDC1O75940 MAU2-207ENST00000587638 1111 ntTSL 210.03□□□□□ -0.81e-7■□□□□ 11
SMNDC1O75940 MAU2-208ENST00000587709 3751 ntTSL 210□□□□□ -0.811e-7■□□□□ 11
SMNDC1O75940 DHX36-207ENST00000477549 644 ntTSL 29.85□□□□□ -0.831e-7■□□□□ 11
SMNDC1O75940 DHX36-212ENST00000495598 719 ntTSL 28.12□□□□□ -1.111e-7■□□□□ 11
SMNDC1O75940 MAU2-213ENST00000590882 553 ntTSL 47.71□□□□□ -1.181e-7■□□□□ 11
SMNDC1O75940 MAU2-206ENST00000587362 557 ntTSL 44.54□□□□□ -1.681e-7■□□□□ 11
SMNDC1O75940 NUP214-203ENST00000451030 5021 ntTSL 1 (best) BASIC11.35□□□□□ -0.593e-9■□□□□ 11
SMNDC1O75940 NUP214-201ENST00000359428 7600 ntAPPRIS P3 TSL 1 (best) BASIC8.82□□□□□ -13e-9■□□□□ 11
SMNDC1O75940 NUP214-202ENST00000411637 7538 ntAPPRIS ALT2 TSL 1 (best) BASIC7.91□□□□□ -1.143e-9■□□□□ 11
SMNDC1O75940 IRAK1-201ENST00000369973 2358 ntTSL 525.79■■□□□ 1.721e-6■□□□□ 11
SMNDC1O75940 IRAK1-205ENST00000429936 2127 ntTSL 5 BASIC23.74■■□□□ 1.391e-6■□□□□ 11
SMNDC1O75940 IRAK1-203ENST00000369980 3666 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.221e-6■□□□□ 11
SMNDC1O75940 IRAK1-204ENST00000393687 2049 ntTSL 1 (best) BASIC16.01■□□□□ 0.151e-6■□□□□ 11
SMNDC1O75940 IRAK1-208ENST00000444230 1125 ntTSL 515.63■□□□□ 0.091e-6■□□□□ 11
SMNDC1O75940 IRAK1-202ENST00000369974 3319 ntTSL 1 (best) BASIC12.26□□□□□ -0.451e-6■□□□□ 11
SMNDC1O75940 PNN-201ENST00000216832 3576 ntAPPRIS P1 TSL 1 (best) BASIC7.96□□□□□ -1.132e-10■□□□□ 11
SMNDC1O75940 PABPN1-201ENST00000216727 2001 ntAPPRIS P2 TSL 1 (best) BASIC28.79■■■□□ 2.28e-8■□□□□ 11
SMNDC1O75940 PABPN1-202ENST00000397276 2768 ntAPPRIS ALT1 TSL 1 (best) BASIC24.68■■□□□ 1.548e-8■□□□□ 11
SMNDC1O75940 ATF4-201ENST00000337304 2019 ntAPPRIS P1 TSL 1 (best) BASIC24.05■■□□□ 1.448e-8■□□□□ 11
SMNDC1O75940 TRAP1-215ENST00000576106 555 ntTSL 420.51■□□□□ 0.878e-8■□□□□ 11
SMNDC1O75940 TRAP1-203ENST00000570403 521 ntTSL 420.34■□□□□ 0.858e-8■□□□□ 11
SMNDC1O75940 TRAP1-205ENST00000571011 480 ntTSL 519.15■□□□□ 0.668e-8■□□□□ 11
SMNDC1O75940 ASMTL-AS1-203ENST00000425740 840 ntTSL 2 BASIC18.3■□□□□ 0.528e-8■□□□□ 11
SMNDC1O75940 TRAP1-211ENST00000574941 558 ntTSL 417.56■□□□□ 0.48e-8■□□□□ 11
SMNDC1O75940 ASMTL-AS1-204ENST00000443929 574 ntTSL 214.6□□□□□ -0.078e-8■□□□□ 11
SMNDC1O75940 BCL2L2-PABPN1-203ENST00000557008 1366 ntAPPRIS P1 TSL 5 BASIC14.41□□□□□ -0.18e-8■□□□□ 11
SMNDC1O75940 ATF4-203ENST00000404241 1910 ntAPPRIS P1 TSL 5 BASIC13.94□□□□□ -0.188e-8■□□□□ 11
SMNDC1O75940 ATF4-202ENST00000396680 1419 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.48e-8■□□□□ 11
SMNDC1O75940 BCL2L2-PABPN1-201ENST00000553781 1241 ntAPPRIS P1 TSL 2 BASIC11.61□□□□□ -0.558e-8■□□□□ 11
SMNDC1O75940 TRAP1-206ENST00000571538 587 ntTSL 48.92□□□□□ -0.988e-8■□□□□ 11
SMNDC1O75940 RBM6-208ENST00000438912 473 ntTSL 56.73□□□□□ -1.338e-8■□□□□ 11
SMNDC1O75940 SLC26A5-215ENST00000487407 2098 ntTSL 223.79■■□□□ 1.45e-12■□□□□ 11
SMNDC1O75940 EZH2-207ENST00000483012 1491 ntTSL 223.36■■□□□ 1.333e-7■□□□□ 11
SMNDC1O75940 EZH2-210ENST00000498186 1876 ntTSL 223.34■■□□□ 1.333e-7■□□□□ 11
SMNDC1O75940 SLC26A5-209ENST00000393735 1947 ntTSL 1 (best) BASIC18.94■□□□□ 0.625e-12■□□□□ 11
SMNDC1O75940 NBEAL2-201ENST00000416683 6364 ntTSL 1 (best)17.21■□□□□ 0.343e-7■□□□□ 11
SMNDC1O75940 NBEAL2-211ENST00000486870 1076 ntTSL 215.93■□□□□ 0.143e-7■□□□□ 11
SMNDC1O75940 NBEAL2-206ENST00000461036 785 ntTSL 315.34■□□□□ 0.053e-7■□□□□ 11
SMNDC1O75940 PPIL2-207ENST00000462188 1735 ntTSL 215.12■□□□□ 0.015e-7■□□□□ 11
SMNDC1O75940 NBEAL2-204ENST00000443829 3508 ntTSL 1 (best)14.57□□□□□ -0.083e-7■□□□□ 11
SMNDC1O75940 NBEAL2-209ENST00000476095 959 ntTSL 514.4□□□□□ -0.13e-7■□□□□ 11
SMNDC1O75940 NBEAL2-210ENST00000477412 827 ntTSL 214.4□□□□□ -0.13e-7■□□□□ 11
SMNDC1O75940 SLC26A5-202ENST00000339444 2474 ntTSL 1 (best) BASIC14.14□□□□□ -0.155e-12■□□□□ 11
SMNDC1O75940 SLC26A5-203ENST00000354356 2686 ntAPPRIS ALT1 TSL 5 BASIC11.4□□□□□ -0.595e-12■□□□□ 11
SMNDC1O75940 SLC26A5-201ENST00000306312 2689 ntAPPRIS P2 TSL 1 (best) BASIC11.29□□□□□ -0.65e-12■□□□□ 11
SMNDC1O75940 NBEAL2-202ENST00000423436 765 ntTSL 310.9□□□□□ -0.663e-7■□□□□ 11
SMNDC1O75940 SLC26A5-211ENST00000432958 2588 ntTSL 5 BASIC10.78□□□□□ -0.685e-12■□□□□ 11
SMNDC1O75940 SLC26A5-204ENST00000356767 1404 ntTSL 1 (best) BASIC10.66□□□□□ -0.75e-12■□□□□ 11
SMNDC1O75940 AC004674.1-201ENST00000458400 739 ntBASIC10.22□□□□□ -0.773e-7■□□□□ 11
SMNDC1O75940 SLC26A5-212ENST00000445809 2324 ntTSL 210.14□□□□□ -0.795e-12■□□□□ 11
SMNDC1O75940 SLC26A5-213ENST00000454864 2242 ntTSL 28.16□□□□□ -1.15e-12■□□□□ 11
SMNDC1O75940 SLC26A5-210ENST00000423416 2374 ntTSL 28.15□□□□□ -1.15e-12■□□□□ 11
SMNDC1O75940 SLC26A5-205ENST00000393723 2174 ntTSL 1 (best) BASIC7.61□□□□□ -1.195e-12■□□□□ 11
SMNDC1O75940 SLC26A5-208ENST00000393730 2498 ntTSL 1 (best) BASIC7.2□□□□□ -1.265e-12■□□□□ 11
SMNDC1O75940 SLC26A5-206ENST00000393727 2270 ntAPPRIS ALT1 TSL 1 (best) BASIC6.96□□□□□ -1.35e-12■□□□□ 11
SMNDC1O75940 SLC26A5-214ENST00000456463 2370 ntTSL 56.86□□□□□ -1.315e-12■□□□□ 11
SMNDC1O75940 SLC26A5-207ENST00000393729 2422 ntTSL 5 BASIC6.11□□□□□ -1.435e-12■□□□□ 11
SMNDC1O75940 RPL18-211ENST00000550973 1111 ntTSL 518.4■□□□□ 0.543e-6■□□□□ 11
SMNDC1O75940 RPL18-212ENST00000551749 2091 ntTSL 217.51■□□□□ 0.393e-6■□□□□ 11
SMNDC1O75940 RPL18-213ENST00000552347 1645 ntTSL 515.82■□□□□ 0.123e-6■□□□□ 11
SMNDC1O75940 RPL18-201ENST00000084795 612 ntTSL 1 (best)15.51■□□□□ 0.073e-6■□□□□ 11
SMNDC1O75940 RPL18-208ENST00000549920 1004 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.073e-6■□□□□ 11
SMNDC1O75940 RPL18-209ENST00000550645 463 ntTSL 5 BASIC15.51■□□□□ 0.073e-6■□□□□ 11
SMNDC1O75940 RPL18-214ENST00000552588 559 ntTSL 3 BASIC15.51■□□□□ 0.073e-6■□□□□ 11
SMNDC1O75940 RPL18-206ENST00000549370 628 ntTSL 514.44□□□□□ -0.13e-6■□□□□ 11
SMNDC1O75940 RPL18-202ENST00000546623 541 ntTSL 514.27□□□□□ -0.133e-6■□□□□ 11
SMNDC1O75940 RPL18-203ENST00000547892 3844 nt12.61□□□□□ -0.393e-6■□□□□ 11
SMNDC1O75940 RPL18-204ENST00000547897 440 ntTSL 512.36□□□□□ -0.433e-6■□□□□ 11
SMNDC1O75940 RPL18-205ENST00000549273 1036 ntTSL 2 BASIC11.78□□□□□ -0.523e-6■□□□□ 11
SMNDC1O75940 RPL18-215ENST00000552705 1081 ntTSL 211.6□□□□□ -0.553e-6■□□□□ 11
SMNDC1O75940 RPL18-216ENST00000552851 691 ntTSL 511.13□□□□□ -0.633e-6■□□□□ 11
SMNDC1O75940 TPT1-212ENST00000530705 4735 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.575e-52■□□□□ 10.9
SMNDC1O75940 TPT1-214ENST00000616577 4814 ntTSL 3 BASIC10.77□□□□□ -0.685e-52■□□□□ 10.9
SMNDC1O75940 CCNH-208ENST00000510921 549 ntTSL 46.22□□□□□ -1.413e-10■□□□□ 10.9
SMNDC1O75940 CCNH-205ENST00000505587 1940 ntTSL 26.11□□□□□ -1.433e-10■□□□□ 10.9
SMNDC1O75940 RPS3-213ENST00000529285 550 ntTSL 518.24■□□□□ 0.511e-323■□□□□ 10.9
SMNDC1O75940 RPS3-220ENST00000534555 387 ntTSL 314.39□□□□□ -0.111e-323■□□□□ 10.9
SMNDC1O75940 RPS3-206ENST00000526248 771 ntTSL 514.25□□□□□ -0.131e-323■□□□□ 10.9
SMNDC1O75940 RPS3-201ENST00000278572 907 ntTSL 3 BASIC13.35□□□□□ -0.271e-323■□□□□ 10.9
SMNDC1O75940 RPS3-212ENST00000529173 1373 ntTSL 512.81□□□□□ -0.361e-323■□□□□ 10.9
SMNDC1O75940 RPS3-217ENST00000531188 2097 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.421e-323■□□□□ 10.9
SMNDC1O75940 RPS3-216ENST00000530721 796 ntTSL 311.56□□□□□ -0.561e-323■□□□□ 10.9
SMNDC1O75940 RPS3-218ENST00000532872 737 ntTSL 311.56□□□□□ -0.561e-323■□□□□ 10.9
SMNDC1O75940 RPS3-209ENST00000527446 1306 ntAPPRIS P1 TSL 2 BASIC11.24□□□□□ -0.611e-323■□□□□ 10.9
SMNDC1O75940 RPS3-208ENST00000527273 390 ntTSL 310.46□□□□□ -0.731e-323■□□□□ 10.9
SMNDC1O75940 RPS3-202ENST00000422465 903 ntTSL 210.27□□□□□ -0.771e-323■□□□□ 10.9
SMNDC1O75940 RPS3-214ENST00000530164 1878 ntTSL 1 (best) BASIC9.87□□□□□ -0.831e-323■□□□□ 10.9
SMNDC1O75940 RPS3-211ENST00000528847 639 ntTSL 59.17□□□□□ -0.941e-323■□□□□ 10.9
SMNDC1O75940 RPS3-210ENST00000528439 473 ntTSL 39.06□□□□□ -0.961e-323■□□□□ 10.9
SMNDC1O75940 RPS3-219ENST00000534440 564 ntTSL 2 BASIC9.06□□□□□ -0.961e-323■□□□□ 10.9
SMNDC1O75940 RPS3-203ENST00000524851 866 ntAPPRIS P1 TSL 1 (best) BASIC8.73□□□□□ -1.011e-323■□□□□ 10.9
SMNDC1O75940 RPS3-207ENST00000526608 710 ntTSL 5 BASIC8.11□□□□□ -1.111e-323■□□□□ 10.9
SMNDC1O75940 SNORD15A-201ENST00000384214 148 ntBASIC6.81□□□□□ -1.321e-323■□□□□ 10.9
SMNDC1O75940 SLC6A8-201ENST00000253122 3763 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.292e-9■□□□□ 10.9
SMNDC1O75940 PNN-202ENST00000553331 656 ntTSL 3 BASIC16.18■□□□□ 0.183e-14■□□□□ 10.9
SMNDC1O75940 TTLL3-209ENST00000426895 2767 ntAPPRIS P2 TSL 2 BASIC20.03■□□□□ 0.81e-6■□□□□ 10.9
SMNDC1O75940 TTLL3-210ENST00000427220 3233 ntTSL 1 (best)19.78■□□□□ 0.761e-6■□□□□ 10.9
SMNDC1O75940 ARPC4-TTLL3-201ENST00000397256 2466 ntAPPRIS P1 TSL 5 BASIC15.67■□□□□ 0.11e-6■□□□□ 10.9
SMNDC1O75940 TTLL3-218ENST00000443148 2031 ntTSL 214.59□□□□□ -0.071e-6■□□□□ 10.9
Retrieved 100 of 11,362 protein–RNA pairs in 113.8 ms