Protein–RNA interactions for Protein: Q9BRP4

PAAF1, Proteasomal ATPase-associated factor 1, humanhuman

Predictions only

Length 392 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PAAF1Q9BRP4 FBXL16-203ENST00000562563 2257 ntTSL 2 BASIC20.42■□□□□ 0.86
PAAF1Q9BRP4 NOS3-204ENST00000467517 2377 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
PAAF1Q9BRP4 C19orf25-202ENST00000436106 2403 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
PAAF1Q9BRP4 KIF22-203ENST00000561482 2505 ntTSL 2 BASIC20.42■□□□□ 0.86
PAAF1Q9BRP4 NEURL4-202ENST00000399464 5200 ntAPPRIS P4 TSL 1 (best) BASIC20.41■□□□□ 0.86
PAAF1Q9BRP4 SNRPN-207ENST00000554227 1763 ntTSL 5 BASIC20.41■□□□□ 0.86
PAAF1Q9BRP4 WDSUB1-203ENST00000392796 1812 ntAPPRIS P1 TSL 2 BASIC20.41■□□□□ 0.86
PAAF1Q9BRP4 FAM129C-208ENST00000599164 2073 ntAPPRIS ALT2 TSL 2 BASIC20.41■□□□□ 0.86
PAAF1Q9BRP4 DSCC1-201ENST00000313655 2314 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
PAAF1Q9BRP4 PTMS-201ENST00000309083 1139 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
PAAF1Q9BRP4 GUCA2B-201ENST00000372581 597 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
PAAF1Q9BRP4 EEF1D-202ENST00000395119 1249 ntAPPRIS ALT2 TSL 1 (best) BASIC20.41■□□□□ 0.86
PAAF1Q9BRP4 KRT18P38-201ENST00000449496 1282 ntBASIC20.41■□□□□ 0.86
PAAF1Q9BRP4 AC092647.4-201ENST00000457211 535 ntBASIC20.41■□□□□ 0.86
PAAF1Q9BRP4 AKTIP-212ENST00000570004 1162 ntAPPRIS P3 TSL 1 (best) BASIC20.41■□□□□ 0.86
PAAF1Q9BRP4 DUX4-205ENST00000570263 768 ntAPPRIS ALT2 TSL 1 (best) BASIC20.41■□□□□ 0.86
PAAF1Q9BRP4 PTPRJ-208ENST00000615445 4773 ntAPPRIS ALT2 TSL 5 BASIC20.41■□□□□ 0.86
PAAF1Q9BRP4 TMC6-201ENST00000306591 1681 ntTSL 5 BASIC20.41■□□□□ 0.86
PAAF1Q9BRP4 MCIDAS-201ENST00000513312 1736 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
PAAF1Q9BRP4 MRM3-201ENST00000304478 1809 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
PAAF1Q9BRP4 GPR42-201ENST00000454971 1804 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
PAAF1Q9BRP4 TCP11-204ENST00000373979 1882 ntAPPRIS P3 TSL 5 BASIC20.41■□□□□ 0.86
PAAF1Q9BRP4 KCNN2-207ENST00000610748 2091 ntTSL 3 BASIC20.41■□□□□ 0.86
PAAF1Q9BRP4 SCUBE1-201ENST00000290460 2258 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
PAAF1Q9BRP4 ASCL4-201ENST00000342331 2260 ntAPPRIS P1 BASIC20.41■□□□□ 0.86
PAAF1Q9BRP4 LONP1-203ENST00000585374 2882 ntTSL 5 BASIC20.4■□□□□ 0.86
PAAF1Q9BRP4 GABBR2-201ENST00000259455 5788 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
PAAF1Q9BRP4 FAM83E-201ENST00000263266 1926 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
PAAF1Q9BRP4 TYMSOS-201ENST00000323813 844 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
PAAF1Q9BRP4 LCE4A-202ENST00000368777 672 ntAPPRIS P1 TSL 2 BASIC20.4■□□□□ 0.86
PAAF1Q9BRP4 LMNB1-202ENST00000395354 1572 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
PAAF1Q9BRP4 KRTAP5-10-201ENST00000398531 1176 ntAPPRIS P1 BASIC20.4■□□□□ 0.86
PAAF1Q9BRP4 BID-204ENST00000399767 2129 ntTSL 2 BASIC20.4■□□□□ 0.86
PAAF1Q9BRP4 JPT1-203ENST00000409753 1605 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
PAAF1Q9BRP4 HSD11B1L-205ENST00000422535 730 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
PAAF1Q9BRP4 CR769775.1-204ENST00000439760 747 ntTSL 5 BASIC20.4■□□□□ 0.86
PAAF1Q9BRP4 RPL29-202ENST00000466397 742 ntAPPRIS P1 TSL 2 BASIC20.4■□□□□ 0.86
PAAF1Q9BRP4 AMER2-202ENST00000515384 3197 ntAPPRIS P1 BASIC20.4■□□□□ 0.86
PAAF1Q9BRP4 SELENOS-203ENST00000526049 1188 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
PAAF1Q9BRP4 RNF135-205ENST00000535306 2098 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
PAAF1Q9BRP4 PHB2-203ENST00000535923 1515 ntAPPRIS P2 TSL 5 BASIC20.4■□□□□ 0.86
PAAF1Q9BRP4 WIPI1-202ENST00000546360 1575 ntTSL 2 BASIC20.4■□□□□ 0.86
PAAF1Q9BRP4 AL132780.2-201ENST00000557615 1021 ntTSL 3 BASIC20.4■□□□□ 0.86
PAAF1Q9BRP4 CLN6-204ENST00000564752 900 ntTSL 3 BASIC20.4■□□□□ 0.86
PAAF1Q9BRP4 LINC01238-205ENST00000567549 1107 ntBASIC20.4■□□□□ 0.86
PAAF1Q9BRP4 PSMD8-202ENST00000585598 541 ntTSL 5 BASIC20.4■□□□□ 0.86
PAAF1Q9BRP4 TYROBP-209ENST00000589517 415 ntAPPRIS ALT1 TSL 1 (best) BASIC20.4■□□□□ 0.86
PAAF1Q9BRP4 AC140113.3-201ENST00000605663 199 ntBASIC20.4■□□□□ 0.86
PAAF1Q9BRP4 UBE2Z-201ENST00000360943 3122 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
PAAF1Q9BRP4 PITPNB-205ENST00000455418 2963 ntAPPRIS ALT1 TSL 5 BASIC20.4■□□□□ 0.86
PAAF1Q9BRP4 BLACE-201ENST00000378120 2456 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
PAAF1Q9BRP4 MSLN-205ENST00000563941 2109 ntAPPRIS ALT2 TSL 1 (best) BASIC20.39■□□□□ 0.86
PAAF1Q9BRP4 CLPB-202ENST00000340729 2071 ntTSL 2 BASIC20.39■□□□□ 0.86
PAAF1Q9BRP4 EEF1A2-201ENST00000217182 2006 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
PAAF1Q9BRP4 NKD2-201ENST00000274150 1940 ntAPPRIS ALT2 TSL 1 (best) BASIC20.39■□□□□ 0.86
PAAF1Q9BRP4 TRPM4-213ENST00000599628 1829 ntTSL 2 BASIC20.39■□□□□ 0.86
PAAF1Q9BRP4 KRT13-202ENST00000336861 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC20.39■□□□□ 0.86
PAAF1Q9BRP4 PHKG2-202ENST00000424889 1566 ntTSL 2 BASIC20.39■□□□□ 0.85
PAAF1Q9BRP4 FLT1-204ENST00000541932 2969 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
PAAF1Q9BRP4 CYB561-205ENST00000542042 1302 ntTSL 2 BASIC20.39■□□□□ 0.85
PAAF1Q9BRP4 LCE3D-201ENST00000368787 613 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
PAAF1Q9BRP4 PHB2-202ENST00000440277 996 ntTSL 5 BASIC20.39■□□□□ 0.85
PAAF1Q9BRP4 REPIN1-210ENST00000482680 1029 ntTSL 2 BASIC20.39■□□□□ 0.85
PAAF1Q9BRP4 LY6E-210ENST00000521182 1079 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
PAAF1Q9BRP4 AP006284.1-202ENST00000527113 527 ntTSL 4 BASIC20.39■□□□□ 0.85
PAAF1Q9BRP4 MED9-202ENST00000580462 565 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
PAAF1Q9BRP4 ELAVL1-202ENST00000593807 856 ntTSL 3 BASIC20.39■□□□□ 0.85
PAAF1Q9BRP4 CENPS-CORT-205ENST00000602787 571 ntAPPRIS P1 TSL 3 BASIC20.39■□□□□ 0.85
PAAF1Q9BRP4 AC243829.1-201ENST00000615128 1059 ntTSL 2 BASIC20.39■□□□□ 0.85
PAAF1Q9BRP4 NRXN1-226ENST00000626899 2543 ntTSL 2 BASIC20.39■□□□□ 0.85
PAAF1Q9BRP4 IRF7-202ENST00000348655 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC20.39■□□□□ 0.85
PAAF1Q9BRP4 SLC35A3-224ENST00000640732 1777 ntTSL 5 BASIC20.39■□□□□ 0.85
PAAF1Q9BRP4 NISCH-201ENST00000345716 5238 ntAPPRIS P3 TSL 1 (best) BASIC20.39■□□□□ 0.85
PAAF1Q9BRP4 GPAT2P1-201ENST00000444924 1672 ntBASIC20.38■□□□□ 0.85
PAAF1Q9BRP4 RTKN-201ENST00000233330 2220 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
PAAF1Q9BRP4 TRMT6-202ENST00000453074 2239 ntTSL 2 BASIC20.38■□□□□ 0.85
PAAF1Q9BRP4 KRT13-208ENST00000587544 1456 ntAPPRIS ALT2 TSL 1 (best) BASIC20.38■□□□□ 0.85
PAAF1Q9BRP4 SPATA6L-207ENST00000475086 1444 ntAPPRIS P1 TSL 2 BASIC20.38■□□□□ 0.85
PAAF1Q9BRP4 IGFALS-201ENST00000215539 2116 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
PAAF1Q9BRP4 GPR3-201ENST00000374024 2115 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
PAAF1Q9BRP4 EARS2-210ENST00000564501 2027 ntTSL 5 BASIC20.38■□□□□ 0.85
PAAF1Q9BRP4 EFHC1-206ENST00000635760 2030 ntTSL 5 BASIC20.38■□□□□ 0.85
PAAF1Q9BRP4 ART1-201ENST00000250693 1312 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
PAAF1Q9BRP4 CIRBP-201ENST00000320936 1328 ntAPPRIS P3 TSL 1 (best) BASIC20.38■□□□□ 0.85
PAAF1Q9BRP4 CIRBP-207ENST00000586472 1303 ntAPPRIS P3 TSL 3 BASIC20.38■□□□□ 0.85
PAAF1Q9BRP4 CKMT1A-202ENST00000413453 1911 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
PAAF1Q9BRP4 COMTD1-201ENST00000372538 976 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
PAAF1Q9BRP4 AC114763.1-202ENST00000414911 867 ntTSL 3 BASIC20.38■□□□□ 0.85
PAAF1Q9BRP4 AL136307.1-201ENST00000454882 411 ntTSL 2 BASIC20.38■□□□□ 0.85
PAAF1Q9BRP4 APBB3-216ENST00000511201 1014 ntTSL 5 BASIC20.38■□□□□ 0.85
PAAF1Q9BRP4 ABCD4-228ENST00000557588 763 ntTSL 3 BASIC20.38■□□□□ 0.85
PAAF1Q9BRP4 CBFB-203ENST00000561924 584 ntTSL 5 BASIC20.38■□□□□ 0.85
PAAF1Q9BRP4 CR769767.2-201ENST00000622735 460 ntBASIC20.38■□□□□ 0.85
PAAF1Q9BRP4 AL031432.5-201ENST00000641059 760 ntBASIC20.38■□□□□ 0.85
PAAF1Q9BRP4 FENDRR-203ENST00000595886 3095 ntTSL 2 BASIC20.38■□□□□ 0.85
PAAF1Q9BRP4 DNAJC8-201ENST00000263697 1759 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
PAAF1Q9BRP4 PCCB-216ENST00000483687 1727 ntTSL 3 BASIC20.38■□□□□ 0.85
PAAF1Q9BRP4 PALM-202ENST00000338448 2725 ntAPPRIS P4 TSL 1 (best) BASIC20.38■□□□□ 0.85
PAAF1Q9BRP4 RUBCN-206ENST00000449205 1603 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
PAAF1Q9BRP4 IQCJ-SCHIP1-204ENST00000485419 2445 ntAPPRIS ALT2 TSL 2 BASIC20.37■□□□□ 0.85
Retrieved 100 of 98,524 protein–RNA pairs in 41.4 ms