Protein–RNA interactions for Protein: Q8NHS4

CLHC1, Clathrin heavy chain linker domain-containing protein 1, humanhuman

Predictions only

Length 586 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLHC1Q8NHS4 AL138781.2-201ENST00000617896 1843 ntBASIC18.35■□□□□ 0.53
CLHC1Q8NHS4 THOC3-208ENST00000513482 1796 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
CLHC1Q8NHS4 NTRK1-201ENST00000358660 2492 ntAPPRIS ALT2 TSL 2 BASIC18.34■□□□□ 0.53
CLHC1Q8NHS4 MSLN-207ENST00000566549 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
CLHC1Q8NHS4 MAPK9-207ENST00000452135 4815 ntAPPRIS P5 TSL 5 BASIC18.34■□□□□ 0.53
CLHC1Q8NHS4 CFP-203ENST00000396992 1592 ntAPPRIS P2 TSL 1 (best) BASIC18.34■□□□□ 0.53
CLHC1Q8NHS4 TMEM155-201ENST00000337677 2313 ntAPPRIS P2 TSL 1 (best) BASIC18.34■□□□□ 0.53
CLHC1Q8NHS4 TAL1-202ENST00000371884 4642 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
CLHC1Q8NHS4 HOXD11-201ENST00000249504 1533 ntAPPRIS P1 TSL 3 BASIC18.34■□□□□ 0.53
CLHC1Q8NHS4 AL390860.1-201ENST00000449298 1541 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
CLHC1Q8NHS4 UAP1-204ENST00000367926 2294 ntAPPRIS P3 TSL 1 (best) BASIC18.34■□□□□ 0.53
CLHC1Q8NHS4 WAC-205ENST00000375664 5924 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
CLHC1Q8NHS4 GIPR-202ENST00000304207 1432 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
CLHC1Q8NHS4 ZNF668-202ENST00000394983 2717 ntAPPRIS P1 TSL 5 BASIC18.34■□□□□ 0.53
CLHC1Q8NHS4 ESPN-202ENST00000416731 1338 ntTSL 5 BASIC18.34■□□□□ 0.53
CLHC1Q8NHS4 CHRNA10-201ENST00000250699 1945 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
CLHC1Q8NHS4 CKLF-201ENST00000264001 669 ntAPPRIS P4 TSL 1 (best) BASIC18.34■□□□□ 0.53
CLHC1Q8NHS4 LRRC26-201ENST00000371542 1209 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
CLHC1Q8NHS4 HLA-L-209ENST00000420110 1011 ntBASIC18.34■□□□□ 0.53
CLHC1Q8NHS4 CFL1-211ENST00000531407 1062 ntTSL 2 BASIC18.34■□□□□ 0.53
CLHC1Q8NHS4 NOXO1-205ENST00000566005 1144 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
CLHC1Q8NHS4 AC068987.5-201ENST00000642069 987 ntAPPRIS P1 BASIC18.34■□□□□ 0.53
CLHC1Q8NHS4 RNF114-201ENST00000244061 2503 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
CLHC1Q8NHS4 SNX4-201ENST00000251775 2513 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
CLHC1Q8NHS4 TXNRD3-205ENST00000640797 1824 ntAPPRIS ALT2 TSL 2 BASIC18.34■□□□□ 0.53
CLHC1Q8NHS4 ST6GALNAC4-201ENST00000335791 1691 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
CLHC1Q8NHS4 LGALS9C-212ENST00000583322 1602 ntAPPRIS ALT1 TSL 5 BASIC18.34■□□□□ 0.53
CLHC1Q8NHS4 ATPAF2-206ENST00000474627 1564 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
CLHC1Q8NHS4 ADAP1-205ENST00000449296 2093 ntTSL 2 BASIC18.34■□□□□ 0.53
CLHC1Q8NHS4 GTF2IP4-202ENST00000544802 3609 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
CLHC1Q8NHS4 SPTBN4-204ENST00000392025 8671 ntAPPRIS ALT1 TSL 5 BASIC18.34■□□□□ 0.53
CLHC1Q8NHS4 NOMO3-202ENST00000399336 4356 ntAPPRIS P2 TSL 1 (best) BASIC18.33■□□□□ 0.53
CLHC1Q8NHS4 WNK1-203ENST00000447667 1902 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
CLHC1Q8NHS4 SLC38A10-201ENST00000288439 2708 ntAPPRIS P3 TSL 1 (best) BASIC18.33■□□□□ 0.53
CLHC1Q8NHS4 GORASP1-220ENST00000479927 1345 ntTSL 2 BASIC18.33■□□□□ 0.53
CLHC1Q8NHS4 RNF139-201ENST00000303545 2637 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
CLHC1Q8NHS4 CHPF-203ENST00000535926 2634 ntTSL 2 BASIC18.33■□□□□ 0.53
CLHC1Q8NHS4 FIP1L1-202ENST00000337488 2198 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
CLHC1Q8NHS4 FIP1L1-203ENST00000358575 2180 ntAPPRIS P4 TSL 2 BASIC18.33■□□□□ 0.52
CLHC1Q8NHS4 HEXDC-201ENST00000327949 1733 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
CLHC1Q8NHS4 GDF5OS-201ENST00000374375 1734 ntAPPRIS P1 TSL 2 BASIC18.33■□□□□ 0.52
CLHC1Q8NHS4 LRRC27-203ENST00000368613 2113 ntAPPRIS P3 TSL 1 (best) BASIC18.33■□□□□ 0.52
CLHC1Q8NHS4 TREX2-204ENST00000370212 861 ntTSL 5 BASIC18.33■□□□□ 0.52
CLHC1Q8NHS4 TREX2-205ENST00000370231 1255 ntAPPRIS P1 TSL 5 BASIC18.33■□□□□ 0.52
CLHC1Q8NHS4 TREX2-207ENST00000393862 907 ntAPPRIS P1 TSL 2 BASIC18.33■□□□□ 0.52
CLHC1Q8NHS4 AC114730.1-201ENST00000400768 472 ntTSL 4 BASIC18.33■□□□□ 0.52
CLHC1Q8NHS4 C2orf82-203ENST00000409533 561 ntAPPRIS P2 TSL 4 BASIC18.33■□□□□ 0.52
CLHC1Q8NHS4 PDCD10-202ENST00000461494 934 ntAPPRIS P1 TSL 3 BASIC18.33■□□□□ 0.52
CLHC1Q8NHS4 AC069185.1-201ENST00000531395 811 ntTSL 3 BASIC18.33■□□□□ 0.52
CLHC1Q8NHS4 RGMA-211ENST00000557420 989 ntTSL 3 BASIC18.33■□□□□ 0.52
CLHC1Q8NHS4 KLF13-207ENST00000560473 489 ntTSL 3 BASIC18.33■□□□□ 0.52
CLHC1Q8NHS4 CYB561-214ENST00000582034 1193 ntTSL 2 BASIC18.33■□□□□ 0.52
CLHC1Q8NHS4 DEDD2-205ENST00000596251 1183 ntAPPRIS P3 TSL 1 (best) BASIC18.33■□□□□ 0.52
CLHC1Q8NHS4 Six3os1_6.1-201ENST00000620790 196 ntBASIC18.33■□□□□ 0.52
CLHC1Q8NHS4 NBL1-212ENST00000621723 2133 ntAPPRIS P3 TSL 2 BASIC18.33■□□□□ 0.52
CLHC1Q8NHS4 GAS2L1-210ENST00000621062 2483 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
CLHC1Q8NHS4 AC073107.1-201ENST00000633579 1962 ntTSL 5 BASIC18.33■□□□□ 0.52
CLHC1Q8NHS4 CPSF3-201ENST00000238112 2345 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
CLHC1Q8NHS4 SLC22A18-202ENST00000347936 1542 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
CLHC1Q8NHS4 SAAL1-204ENST00000529318 1503 ntAPPRIS ALT1 TSL 5 BASIC18.33■□□□□ 0.52
CLHC1Q8NHS4 MYEOV-201ENST00000308946 2287 ntAPPRIS P3 TSL 1 (best) BASIC18.33■□□□□ 0.52
CLHC1Q8NHS4 PPFIA1-202ENST00000389547 4133 ntAPPRIS ALT1 TSL 1 (best) BASIC18.33■□□□□ 0.52
CLHC1Q8NHS4 GOSR2-210ENST00000576910 1891 ntAPPRIS ALT1 TSL 5 BASIC18.33■□□□□ 0.52
CLHC1Q8NHS4 CASC2-205ENST00000454781 2216 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
CLHC1Q8NHS4 NAT6-204ENST00000443094 1464 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.52
CLHC1Q8NHS4 PODXL2-201ENST00000342480 2186 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
CLHC1Q8NHS4 TCTN1-223ENST00000550703 2149 ntTSL 2 BASIC18.32■□□□□ 0.52
CLHC1Q8NHS4 USP49-202ENST00000373010 2446 ntTSL 5 BASIC18.32■□□□□ 0.52
CLHC1Q8NHS4 PCDHAC2-201ENST00000289269 5963 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
CLHC1Q8NHS4 PRR7-202ENST00000502922 1345 ntAPPRIS P1 TSL 2 BASIC18.32■□□□□ 0.52
CLHC1Q8NHS4 C19orf84-202ENST00000574814 1318 ntAPPRIS P2 TSL 1 (best) BASIC18.32■□□□□ 0.52
CLHC1Q8NHS4 IL10RB-201ENST00000290200 1963 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
CLHC1Q8NHS4 MBIP-203ENST00000416007 1648 ntAPPRIS P3 TSL 1 (best) BASIC18.32■□□□□ 0.52
CLHC1Q8NHS4 FAM83A-205ENST00000522648 1604 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
CLHC1Q8NHS4 CNIH3-201ENST00000272133 2558 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
CLHC1Q8NHS4 AAED1-201ENST00000375234 2863 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
CLHC1Q8NHS4 MRPS24-201ENST00000317534 707 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
CLHC1Q8NHS4 POM121L13P-201ENST00000422362 380 ntBASIC18.32■□□□□ 0.52
CLHC1Q8NHS4 MAGI2-AS3-209ENST00000448195 774 ntTSL 3 BASIC18.32■□□□□ 0.52
CLHC1Q8NHS4 TMEM218-207ENST00000528724 1117 ntTSL 5 BASIC18.32■□□□□ 0.52
CLHC1Q8NHS4 TMEM218-214ENST00000532156 954 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
CLHC1Q8NHS4 CES1P1-204ENST00000574030 877 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
CLHC1Q8NHS4 AC005225.2-202ENST00000617980 408 ntTSL 4 BASIC18.32■□□□□ 0.52
CLHC1Q8NHS4 GORASP1-206ENST00000422110 2523 ntTSL 2 BASIC18.32■□□□□ 0.52
CLHC1Q8NHS4 DTWD1-202ENST00000403028 1584 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
CLHC1Q8NHS4 NOL3-204ENST00000564053 1592 ntAPPRIS ALT2 TSL 2 BASIC18.32■□□□□ 0.52
CLHC1Q8NHS4 RAPGEF5-203ENST00000405243 2800 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
CLHC1Q8NHS4 CCDC27-201ENST00000294600 2176 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
CLHC1Q8NHS4 DCLK2-207ENST00000635524 2153 ntAPPRIS ALT2 TSL 5 BASIC18.32■□□□□ 0.52
CLHC1Q8NHS4 LTBP3-217ENST00000530785 2461 ntTSL 2 BASIC18.32■□□□□ 0.52
CLHC1Q8NHS4 SNAPC2-201ENST00000221573 1542 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
CLHC1Q8NHS4 CIRBP-215ENST00000588030 1509 ntAPPRIS P3 TSL 5 BASIC18.32■□□□□ 0.52
CLHC1Q8NHS4 GDPD1-201ENST00000284116 1821 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
CLHC1Q8NHS4 CARD9-202ENST00000371734 1814 ntTSL 5 BASIC18.32■□□□□ 0.52
CLHC1Q8NHS4 PHF12-201ENST00000268756 2957 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
CLHC1Q8NHS4 SNAP47-201ENST00000315781 2367 ntAPPRIS P3 TSL 1 (best) BASIC18.32■□□□□ 0.52
CLHC1Q8NHS4 SLC31A2-201ENST00000259392 1785 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
CLHC1Q8NHS4 KIFC3-201ENST00000379655 3427 ntAPPRIS P3 TSL 1 (best) BASIC18.32■□□□□ 0.52
CLHC1Q8NHS4 GPR142-201ENST00000335666 1437 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
CLHC1Q8NHS4 CD8B-203ENST00000390655 1417 ntAPPRIS P2 TSL 1 (best) BASIC18.32■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 29.2 ms