Protein–RNA interactions for Protein: Q8NHQ9

DDX55, ATP-dependent RNA helicase DDX55, humanhuman

Known RBP eCLIP

Length 600 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55Q8NHQ9 C2orf82-203ENST00000409533 561 ntAPPRIS P2 TSL 4 BASIC25.2■■□□□ 1.625e-7■■□□□ 11.7
DDX55Q8NHQ9 C2orf82-202ENST00000409230 663 ntAPPRIS P2 TSL 3 BASIC21.59■■□□□ 1.055e-7■■□□□ 11.7
DDX55Q8NHQ9 HYOU1-218ENST00000614668 1569 ntTSL 1 (best) BASIC16.68■□□□□ 0.263e-11■■□□□ 11.7
DDX55Q8NHQ9 HYOU1-219ENST00000614711 3057 ntTSL 5 BASIC16.09■□□□□ 0.173e-11■■□□□ 11.7
DDX55Q8NHQ9 HYOU1-220ENST00000617285 4529 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.073e-11■■□□□ 11.7
DDX55Q8NHQ9 HYOU1-217ENST00000612687 4360 ntTSL 5 BASIC13.57□□□□□ -0.243e-11■■□□□ 11.7
DDX55Q8NHQ9 RNF220-201ENST00000335497 1203 ntTSL 532.43■■■□□ 2.784e-9■■□□□ 11.7
DDX55Q8NHQ9 RNF220-216ENST00000488865 860 ntTSL 232.43■■■□□ 2.784e-9■■□□□ 11.7
DDX55Q8NHQ9 GLRX5-201ENST00000331334 1564 ntAPPRIS P1 TSL 1 (best) BASIC31.03■■■□□ 2.561e-9■■□□□ 11.7
DDX55Q8NHQ9 CPNE1-207ENST00000414664 1070 ntTSL 530.65■■■□□ 2.58e-6■■□□□ 11.7
DDX55Q8NHQ9 TAF10-201ENST00000299424 1215 ntAPPRIS P1 TSL 1 (best) BASIC30.56■■■□□ 2.488e-6■■□□□ 11.7
DDX55Q8NHQ9 CPNE1-212ENST00000430570 1332 ntTSL 530.18■■■□□ 2.428e-6■■□□□ 11.7
DDX55Q8NHQ9 OXLD1-201ENST00000374741 620 ntAPPRIS P1 TSL 1 (best) BASIC29.84■■■□□ 2.378e-6■■□□□ 11.7
DDX55Q8NHQ9 TAF10-204ENST00000532344 638 ntTSL 229.64■■■□□ 2.348e-6■■□□□ 11.7
DDX55Q8NHQ9 CPNE1-217ENST00000439669 784 ntTSL 529.33■■■□□ 2.298e-6■■□□□ 11.7
DDX55Q8NHQ9 LMAN2-208ENST00000515209 1149 ntAPPRIS ALT2 TSL 3 BASIC29.14■■■□□ 2.268e-6■■□□□ 11.7
DDX55Q8NHQ9 RNF220-208ENST00000471494 720 ntTSL 528.83■■■□□ 2.214e-9■■□□□ 11.7
DDX55Q8NHQ9 OXLD1-203ENST00000571503 803 ntTSL 2 BASIC28.68■■■□□ 2.188e-6■■□□□ 11.7
DDX55Q8NHQ9 LAMTOR1-201ENST00000278671 1179 ntAPPRIS P1 TSL 1 (best) BASIC27.38■■□□□ 1.973e-8■■□□□ 11.7
DDX55Q8NHQ9 RECQL4-206ENST00000534270 517 ntTSL 326.69■■□□□ 1.868e-6■■□□□ 11.7
DDX55Q8NHQ9 OXLD1-204ENST00000571757 923 ntTSL 226.66■■□□□ 1.868e-6■■□□□ 11.7
DDX55Q8NHQ9 TMEM230-210ENST00000612323 1231 ntTSL 1 (best) BASIC26.25■■□□□ 1.798e-6■■□□□ 11.7
DDX55Q8NHQ9 OXLD1-206ENST00000575963 1600 nt26.13■■□□□ 1.778e-6■■□□□ 11.7
DDX55Q8NHQ9 SAP30BP-212ENST00000580322 1558 ntTSL 525.9■■□□□ 1.748e-6■■□□□ 11.7
DDX55Q8NHQ9 LMAN2-207ENST00000514458 616 ntTSL 525.8■■□□□ 1.728e-6■■□□□ 11.7
DDX55Q8NHQ9 TMEM230-205ENST00000379279 1636 ntAPPRIS P1 TSL 2 BASIC25.75■■□□□ 1.718e-6■■□□□ 11.7
DDX55Q8NHQ9 ZNF580-201ENST00000325333 1261 ntAPPRIS P1 TSL 1 (best) BASIC25.1■■□□□ 1.618e-6■■□□□ 11.7
DDX55Q8NHQ9 ZNF580-203ENST00000545125 1025 ntAPPRIS P1 TSL 3 BASIC25.1■■□□□ 1.618e-6■■□□□ 11.7
DDX55Q8NHQ9 OXLD1-202ENST00000571092 553 ntTSL 224.77■■□□□ 1.568e-6■■□□□ 11.7
DDX55Q8NHQ9 POLD1-204ENST00000593981 873 ntTSL 524.58■■□□□ 1.536e-11■■□□□ 11.7
DDX55Q8NHQ9 CITED2-202ENST00000536159 1797 ntAPPRIS P1 TSL 3 BASIC24.48■■□□□ 1.518e-6■■□□□ 11.7
DDX55Q8NHQ9 CITED2-203ENST00000537332 1780 ntTSL 3 BASIC24.48■■□□□ 1.518e-6■■□□□ 11.7
DDX55Q8NHQ9 OXLD1-207ENST00000575992 821 ntTSL 224.39■■□□□ 1.498e-6■■□□□ 11.7
DDX55Q8NHQ9 CMTM7-202ENST00000349718 1214 ntTSL 1 (best) BASIC24.36■■□□□ 1.498e-6■■□□□ 11.7
DDX55Q8NHQ9 MTCH2-201ENST00000302503 2587 ntAPPRIS P1 TSL 1 (best) BASIC24.26■■□□□ 1.478e-6■■□□□ 11.7
DDX55Q8NHQ9 HIGD1A-201ENST00000321331 1373 ntAPPRIS P1 TSL 1 (best) BASIC24.07■■□□□ 1.448e-6■■□□□ 11.7
DDX55Q8NHQ9 TAF10-202ENST00000527248 425 ntTSL 323.84■■□□□ 1.418e-6■■□□□ 11.7
DDX55Q8NHQ9 LMAN2-201ENST00000303127 1800 ntAPPRIS P2 TSL 1 (best) BASIC23.82■■□□□ 1.43e-11■■□□□ 11.7
DDX55Q8NHQ9 AC099329.3-201ENST00000431549 602 ntAPPRIS P1 TSL 4 BASIC23.7■■□□□ 1.388e-6■■□□□ 11.7
DDX55Q8NHQ9 TMEM230-209ENST00000492419 1730 ntTSL 323.68■■□□□ 1.388e-6■■□□□ 11.7
DDX55Q8NHQ9 LMAN2-202ENST00000502560 876 ntTSL 323.66■■□□□ 1.388e-6■■□□□ 11.7
DDX55Q8NHQ9 RNF220-205ENST00000440132 1200 ntTSL 223.56■■□□□ 1.364e-9■■□□□ 11.7
DDX55Q8NHQ9 HMOX1-201ENST00000216117 1822 ntAPPRIS P1 TSL 1 (best) BASIC23.4■■□□□ 1.348e-6■■□□□ 11.7
DDX55Q8NHQ9 POLD1-208ENST00000596648 1048 ntTSL 523.31■■□□□ 1.329e-11■■□□□ 11.7
DDX55Q8NHQ9 ZNF581-202ENST00000585995 591 ntTSL 323.26■■□□□ 1.318e-6■■□□□ 11.7
DDX55Q8NHQ9 SAP30BP-224ENST00000584557 2000 nt23.22■■□□□ 1.318e-6■■□□□ 11.7
DDX55Q8NHQ9 TMEM230-207ENST00000379286 1735 ntAPPRIS P1 TSL 2 BASIC23.11■■□□□ 1.298e-6■■□□□ 11.7
DDX55Q8NHQ9 POLRMT-201ENST00000587057 1229 ntTSL 523.01■■□□□ 1.276e-7■■□□□ 11.7
DDX55Q8NHQ9 DCTD-201ENST00000357067 1931 ntTSL 1 (best) BASIC22.96■■□□□ 1.278e-6■■□□□ 11.7
DDX55Q8NHQ9 TMEM230-206ENST00000379283 1660 ntAPPRIS P1 TSL 3 BASIC22.95■■□□□ 1.268e-6■■□□□ 11.7
DDX55Q8NHQ9 CCDC106-208ENST00000592996 741 ntTSL 322.92■■□□□ 1.268e-6■■□□□ 11.7
DDX55Q8NHQ9 HIGD1A-204ENST00000452906 585 ntTSL 2 BASIC22.72■■□□□ 1.238e-6■■□□□ 11.7
DDX55Q8NHQ9 PPP1R12C-201ENST00000263433 2924 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.223e-8■■□□□ 11.7
DDX55Q8NHQ9 UBE2Q1-201ENST00000292211 3210 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.228e-6■■□□□ 11.7
DDX55Q8NHQ9 MTCH2-203ENST00000530428 930 ntTSL 522.49■■□□□ 1.198e-6■■□□□ 11.7
DDX55Q8NHQ9 OXLD1-205ENST00000573786 678 ntTSL 222.13■■□□□ 1.138e-6■■□□□ 11.7
DDX55Q8NHQ9 CPNE1-210ENST00000416778 744 ntTSL 222.12■■□□□ 1.138e-6■■□□□ 11.7
DDX55Q8NHQ9 TMEM230-208ENST00000379299 1642 ntAPPRIS P1 TSL 1 (best)21.98■■□□□ 1.118e-6■■□□□ 11.7
DDX55Q8NHQ9 LARP1-204ENST00000518297 2630 ntTSL 521.89■■□□□ 1.098e-6■■□□□ 11.7
DDX55Q8NHQ9 THEM6-201ENST00000336138 2259 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.088e-6■■□□□ 11.7
DDX55Q8NHQ9 SAFB-213ENST00000592555 1360 ntTSL 521.75■■□□□ 1.078e-6■■□□□ 11.7
DDX55Q8NHQ9 BRPF3-202ENST00000357641 6052 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.058e-6■■□□□ 11.7
DDX55Q8NHQ9 POLD1-211ENST00000600746 999 ntTSL 521.18■□□□□ 0.982e-6■■□□□ 11.7
DDX55Q8NHQ9 PPP1R12C-207ENST00000591938 1262 ntTSL 521.18■□□□□ 0.983e-8■■□□□ 11.7
DDX55Q8NHQ9 SAP30BP-201ENST00000293208 1272 ntTSL 521.1■□□□□ 0.978e-6■■□□□ 11.7
DDX55Q8NHQ9 TRMT1-222ENST00000593157 2127 ntTSL 220.9■□□□□ 0.948e-6■■□□□ 11.7
DDX55Q8NHQ9 POLD1-213ENST00000601098 783 ntTSL 320.75■□□□□ 0.912e-6■■□□□ 11.7
DDX55Q8NHQ9 TRMT1-211ENST00000588511 2251 ntTSL 520.73■□□□□ 0.918e-6■■□□□ 11.7
DDX55Q8NHQ9 MRPL34-205ENST00000600434 793 ntAPPRIS P2 TSL 3 BASIC20.67■□□□□ 0.98e-6■■□□□ 11.7
DDX55Q8NHQ9 LMAN2-206ENST00000513877 823 ntTSL 220.65■□□□□ 0.98e-6■■□□□ 11.7
DDX55Q8NHQ9 CMTM7-201ENST00000334983 2038 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.898e-6■■□□□ 11.7
DDX55Q8NHQ9 PPP6R2-206ENST00000427222 1811 ntTSL 520.45■□□□□ 0.868e-6■■□□□ 11.7
DDX55Q8NHQ9 ZNF580-202ENST00000543039 1707 ntAPPRIS P1 BASIC20.42■□□□□ 0.868e-6■■□□□ 11.7
DDX55Q8NHQ9 MAMDC4-203ENST00000479475 2603 ntTSL 1 (best)20.34■□□□□ 0.858e-6■■□□□ 11.7
DDX55Q8NHQ9 DCTD-203ENST00000500813 1829 ntTSL 220.16■□□□□ 0.828e-6■■□□□ 11.7
DDX55Q8NHQ9 SAP30BP-221ENST00000583536 1000 ntTSL 319.93■□□□□ 0.788e-6■■□□□ 11.7
DDX55Q8NHQ9 MRPL34-202ENST00000594999 555 ntAPPRIS P2 TSL 2 BASIC19.66■□□□□ 0.748e-6■■□□□ 11.7
DDX55Q8NHQ9 EIF2AK3-201ENST00000303236 4646 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.728e-6■■□□□ 11.7
DDX55Q8NHQ9 FBXW11-202ENST00000296933 4539 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.728e-6■■□□□ 11.7
DDX55Q8NHQ9 LRRC20-205ENST00000395010 2959 ntTSL 3 BASIC19.46■□□□□ 0.718e-6■■□□□ 11.7
DDX55Q8NHQ9 TAF10-203ENST00000531760 502 ntTSL 519.45■□□□□ 0.78e-6■■□□□ 11.7
DDX55Q8NHQ9 CITED2-201ENST00000367651 2354 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.688e-6■■□□□ 11.7
DDX55Q8NHQ9 TRMT1-204ENST00000585435 437 ntTSL 319.21■□□□□ 0.678e-6■■□□□ 11.7
DDX55Q8NHQ9 SLC4A2-209ENST00000472204 994 ntTSL 519.05■□□□□ 0.641e-9■■□□□ 11.7
DDX55Q8NHQ9 LRRC20-202ENST00000357631 2906 ntTSL 218.77■□□□□ 0.598e-6■■□□□ 11.7
DDX55Q8NHQ9 LRRC20-203ENST00000358141 2924 ntTSL 2 BASIC18.77■□□□□ 0.598e-6■■□□□ 11.7
DDX55Q8NHQ9 POLD1-203ENST00000593887 695 ntTSL 518.75■□□□□ 0.592e-6■■□□□ 11.7
DDX55Q8NHQ9 POLRMT-207ENST00000592633 469 ntTSL 218.73■□□□□ 0.598e-6■■□□□ 11.7
DDX55Q8NHQ9 TRMT1-203ENST00000437766 2263 ntAPPRIS P3 TSL 1 (best) BASIC18.7■□□□□ 0.588e-6■■□□□ 11.7
DDX55Q8NHQ9 CMTM7-204ENST00000464689 2066 ntTSL 218.43■□□□□ 0.548e-6■■□□□ 11.7
DDX55Q8NHQ9 HNRNPR-204ENST00000427764 1788 ntTSL 1 (best) BASIC18.42■□□□□ 0.548e-6■■□□□ 11.7
DDX55Q8NHQ9 PDCD7-201ENST00000204549 2851 ntAPPRIS P2 TSL 1 (best) BASIC18.33■□□□□ 0.538e-6■■□□□ 11.7
DDX55Q8NHQ9 CLUHP3-205ENST00000532304 1571 ntTSL 1 (best)18.26■□□□□ 0.518e-6■■□□□ 11.7
DDX55Q8NHQ9 MRPL34-201ENST00000252602 968 ntAPPRIS P2 TSL 1 (best) BASIC18.25■□□□□ 0.518e-6■■□□□ 11.7
DDX55Q8NHQ9 ATP6V1F-201ENST00000249289 704 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.493e-37■■□□□ 11.7
DDX55Q8NHQ9 LRRC20-206ENST00000395011 2903 ntTSL 4 BASIC17.98■□□□□ 0.478e-6■■□□□ 11.7
DDX55Q8NHQ9 MRPL34-203ENST00000595444 863 ntAPPRIS ALT2 TSL 3 BASIC17.94■□□□□ 0.468e-6■■□□□ 11.7
DDX55Q8NHQ9 LAMTOR1-203ENST00000535872 899 ntTSL 517.7■□□□□ 0.423e-8■■□□□ 11.7
DDX55Q8NHQ9 HIGD1A-202ENST00000418900 1322 ntAPPRIS P1 TSL 2 BASIC17.57■□□□□ 0.48e-6■■□□□ 11.7
DDX55Q8NHQ9 SAFB-207ENST00000589863 2708 ntTSL 217.56■□□□□ 0.48e-6■■□□□ 11.7
Retrieved 100 of 15,504 protein–RNA pairs in 168.4 ms