Protein–RNA interactions for Protein: P09017

HOXC4, Homeobox protein Hox-C4, humanhuman

Predicted RBP Predictions only

Length 264 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC4P09017 OR13J1-201ENST00000377981 1339 ntAPPRIS P1 BASIC18.68■□□□□ 0.58
HOXC4P09017 HAGHL-203ENST00000389703 1347 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
HOXC4P09017 RELB-202ENST00000505236 2219 ntAPPRIS ALT2 TSL 5 BASIC18.68■□□□□ 0.58
HOXC4P09017 POLI-202ENST00000406285 2030 ntTSL 2 BASIC18.67■□□□□ 0.58
HOXC4P09017 EARS2-210ENST00000564501 2027 ntTSL 5 BASIC18.67■□□□□ 0.58
HOXC4P09017 SLC16A5-202ENST00000450736 2051 ntAPPRIS P2 TSL 1 (best) BASIC18.67■□□□□ 0.58
HOXC4P09017 SH3RF3-201ENST00000309415 5803 ntAPPRIS P1 TSL 5 BASIC18.67■□□□□ 0.58
HOXC4P09017 DSCC1-201ENST00000313655 2314 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
HOXC4P09017 IGFALS-201ENST00000215539 2116 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
HOXC4P09017 NECAB3-202ENST00000375238 1942 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
HOXC4P09017 AZU1-201ENST00000233997 908 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
HOXC4P09017 RHEBL1-201ENST00000301068 1210 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
HOXC4P09017 DNAJC4-201ENST00000321460 1015 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
HOXC4P09017 ANKRD20A18P-201ENST00000359341 492 ntBASIC18.67■□□□□ 0.58
HOXC4P09017 GCHFR-202ENST00000558467 785 ntTSL 2 BASIC18.67■□□□□ 0.58
HOXC4P09017 CMTM3-210ENST00000565666 769 ntTSL 3 BASIC18.67■□□□□ 0.58
HOXC4P09017 ULK4P3-205ENST00000568486 1158 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
HOXC4P09017 NTF6B-201ENST00000591913 560 ntBASIC18.67■□□□□ 0.58
HOXC4P09017 BCL2L12-208ENST00000600947 633 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
HOXC4P09017 TNFRSF1A-213ENST00000540022 1527 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
HOXC4P09017 MGAT5B-209ENST00000569840 4492 ntAPPRIS ALT1 TSL 5 BASIC18.67■□□□□ 0.58
HOXC4P09017 PHKG2-202ENST00000424889 1566 ntTSL 2 BASIC18.67■□□□□ 0.58
HOXC4P09017 ELMOD1-206ENST00000531234 1832 ntTSL 2 BASIC18.67■□□□□ 0.58
HOXC4P09017 FARSA-207ENST00000588025 2057 ntTSL 5 BASIC18.67■□□□□ 0.58
HOXC4P09017 GJA4-201ENST00000342280 1622 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
HOXC4P09017 KLHL14-201ENST00000358095 1884 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
HOXC4P09017 FBLN1-204ENST00000402984 2355 ntTSL 5 BASIC18.67■□□□□ 0.58
HOXC4P09017 RUBCN-206ENST00000449205 1603 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
HOXC4P09017 NR2F2-201ENST00000394166 5275 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
HOXC4P09017 DLG3-201ENST00000194900 6112 ntAPPRIS ALT2 TSL 5 BASIC18.66■□□□□ 0.58
HOXC4P09017 FEM1AP3-201ENST00000403722 1741 ntBASIC18.66■□□□□ 0.58
HOXC4P09017 ACY1-201ENST00000404366 1473 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
HOXC4P09017 TH-202ENST00000333684 1535 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
HOXC4P09017 C22orf39-205ENST00000542103 1523 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
HOXC4P09017 ZNF48-201ENST00000320159 3234 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
HOXC4P09017 TMEM129-201ENST00000303277 2678 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
HOXC4P09017 PEX11G-201ENST00000221480 1062 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
HOXC4P09017 NPM3-201ENST00000370110 877 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
HOXC4P09017 RASGRP2-205ENST00000377489 583 ntTSL 3 BASIC18.66■□□□□ 0.58
HOXC4P09017 CR769775.1-204ENST00000439760 747 ntTSL 5 BASIC18.66■□□□□ 0.58
HOXC4P09017 HOMER2P1-201ENST00000455653 964 ntBASIC18.66■□□□□ 0.58
HOXC4P09017 AC019068.1-202ENST00000483218 768 ntTSL 3 BASIC18.66■□□□□ 0.58
HOXC4P09017 AL132780.2-201ENST00000557615 1021 ntTSL 3 BASIC18.66■□□□□ 0.58
HOXC4P09017 ATP6V0C-203ENST00000565223 668 ntTSL 3 BASIC18.66■□□□□ 0.58
HOXC4P09017 ATP6V0C-204ENST00000568562 477 ntTSL 3 BASIC18.66■□□□□ 0.58
HOXC4P09017 CR769767.2-201ENST00000622735 460 ntBASIC18.66■□□□□ 0.58
HOXC4P09017 MARK4-211ENST00000622871 1147 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
HOXC4P09017 RASSF1-202ENST00000357043 1864 ntAPPRIS P3 TSL 1 (best) BASIC18.66■□□□□ 0.58
HOXC4P09017 SPAG16-209ENST00000447990 1330 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
HOXC4P09017 MBIP-203ENST00000416007 1648 ntAPPRIS P3 TSL 1 (best) BASIC18.66■□□□□ 0.58
HOXC4P09017 TMEM91-210ENST00000542945 1610 ntTSL 2 BASIC18.66■□□□□ 0.58
HOXC4P09017 CYP2A7-202ENST00000301146 2281 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
HOXC4P09017 AKIRIN2-201ENST00000257787 1662 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
HOXC4P09017 EDEM1-204ENST00000445686 1363 ntTSL 2 BASIC18.66■□□□□ 0.58
HOXC4P09017 NAB2-202ENST00000342556 2318 ntTSL 5 BASIC18.66■□□□□ 0.58
HOXC4P09017 ACADVL-203ENST00000356839 2323 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
HOXC4P09017 CDC14B-208ENST00000463569 1734 ntAPPRIS ALT2 TSL 5 BASIC18.66■□□□□ 0.58
HOXC4P09017 ZNF688-201ENST00000223459 2506 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
HOXC4P09017 AC096719.1-201ENST00000510705 1874 ntTSL 5 BASIC18.65■□□□□ 0.58
HOXC4P09017 CPEB1-214ENST00000617522 2220 ntTSL 5 BASIC18.65■□□□□ 0.58
HOXC4P09017 HSD17B1-202ENST00000585807 4982 ntAPPRIS P3 TSL 1 (best) BASIC18.65■□□□□ 0.58
HOXC4P09017 SLC27A4-202ENST00000372870 1557 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
HOXC4P09017 MSANTD2-202ENST00000374979 2349 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
HOXC4P09017 JPT1-203ENST00000409753 1605 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
HOXC4P09017 TMEM160-201ENST00000253047 663 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
HOXC4P09017 GGCT-202ENST00000275428 1173 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
HOXC4P09017 GUK1-204ENST00000366721 689 ntTSL 3 BASIC18.65■□□□□ 0.58
HOXC4P09017 ILF2-202ENST00000368681 726 ntTSL 2 BASIC18.65■□□□□ 0.58
HOXC4P09017 C7orf50-203ENST00000397100 1264 ntAPPRIS P2 TSL 3 BASIC18.65■□□□□ 0.58
HOXC4P09017 YPEL3-201ENST00000398838 935 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
HOXC4P09017 AL023284.2-201ENST00000405850 579 ntBASIC18.65■□□□□ 0.58
HOXC4P09017 MRPL46-202ENST00000558531 1002 ntTSL 2 BASIC18.65■□□□□ 0.58
HOXC4P09017 MED9-202ENST00000580462 565 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
HOXC4P09017 C17orf62-221ENST00000581196 668 ntTSL 4 BASIC18.65■□□□□ 0.58
HOXC4P09017 NT5C-210ENST00000582160 860 ntTSL 2 BASIC18.65■□□□□ 0.58
HOXC4P09017 JOSD2-204ENST00000598418 996 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
HOXC4P09017 OBP2B-205ENST00000618116 961 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
HOXC4P09017 PRLHR-202ENST00000636925 1275 ntAPPRIS P1 BASIC18.65■□□□□ 0.58
HOXC4P09017 HOMEZ-201ENST00000357460 4971 ntAPPRIS P2 TSL 1 (best) BASIC18.65■□□□□ 0.58
HOXC4P09017 AKAP8L-201ENST00000397410 2146 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
HOXC4P09017 MSLN-205ENST00000563941 2109 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
HOXC4P09017 SNRPN-207ENST00000554227 1763 ntTSL 5 BASIC18.65■□□□□ 0.58
HOXC4P09017 MEN1-206ENST00000377321 2614 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
HOXC4P09017 WDSUB1-203ENST00000392796 1812 ntAPPRIS P1 TSL 2 BASIC18.65■□□□□ 0.58
HOXC4P09017 SHKBP1-225ENST00000600733 2284 ntTSL 5 BASIC18.65■□□□□ 0.58
HOXC4P09017 KRT13-208ENST00000587544 1456 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
HOXC4P09017 ZHX3-212ENST00000558993 1528 ntTSL 5 BASIC18.64■□□□□ 0.58
HOXC4P09017 ARFGAP3-201ENST00000263245 2857 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
HOXC4P09017 FYN-204ENST00000368678 2573 ntAPPRIS ALT1 TSL 5 BASIC18.64■□□□□ 0.57
HOXC4P09017 CHST1-201ENST00000308064 2718 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
HOXC4P09017 PDLIM3-202ENST00000284770 1766 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
HOXC4P09017 GUCA2B-201ENST00000372581 597 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
HOXC4P09017 PLCB1-204ENST00000404098 1260 ntTSL 3 BASIC18.64■□□□□ 0.57
HOXC4P09017 HDAC11-AS1-201ENST00000424112 515 ntTSL 2 BASIC18.64■□□□□ 0.57
HOXC4P09017 SAPCD2P2-201ENST00000431719 1174 ntBASIC18.64■□□□□ 0.57
HOXC4P09017 BVES-AS1-203ENST00000580511 853 ntTSL 5 BASIC18.64■□□□□ 0.57
HOXC4P09017 UQCR11-201ENST00000585671 753 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
HOXC4P09017 ADORA1-208ENST00000618295 862 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
HOXC4P09017 EBF1-202ENST00000380654 2345 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
HOXC4P09017 IRF7-202ENST00000348655 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 23.8 ms