Protein–RNA interactions for Protein: E9PIF3

NPIPA2, Nuclear pore complex-interacting protein family member A2, humanhuman

Predictions only

Length 369 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPIPA2E9PIF3 GALNT2-201ENST00000366672 4454 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
NPIPA2E9PIF3 IGFALS-201ENST00000215539 2116 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
NPIPA2E9PIF3 KCNMA1-252ENST00000639120 2308 ntTSL 5 BASIC17.42■□□□□ 0.38
NPIPA2E9PIF3 ACBD4-204ENST00000431281 2026 ntTSL 5 BASIC17.42■□□□□ 0.38
NPIPA2E9PIF3 KCNK4-207ENST00000539216 1723 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
NPIPA2E9PIF3 CACTIN-202ENST00000248420 2671 ntAPPRIS P1 TSL 5 BASIC17.42■□□□□ 0.38
NPIPA2E9PIF3 AL035252.2-201ENST00000454676 3168 ntTSL 2 BASIC17.42■□□□□ 0.38
NPIPA2E9PIF3 RTKN-201ENST00000233330 2220 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
NPIPA2E9PIF3 HSCB-201ENST00000216027 1114 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
NPIPA2E9PIF3 OXT-201ENST00000217386 513 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
NPIPA2E9PIF3 TSPY14P-201ENST00000303979 915 ntBASIC17.42■□□□□ 0.38
NPIPA2E9PIF3 HOXA9-202ENST00000396345 797 ntTSL 2 BASIC17.42■□□□□ 0.38
NPIPA2E9PIF3 AC134772.1-201ENST00000438872 885 ntTSL 3 BASIC17.42■□□□□ 0.38
NPIPA2E9PIF3 MFAP1P1-201ENST00000442257 1255 ntBASIC17.42■□□□□ 0.38
NPIPA2E9PIF3 AL139246.2-201ENST00000456687 1297 ntTSL 5 BASIC17.42■□□□□ 0.38
NPIPA2E9PIF3 AC091390.4-202ENST00000476426 537 ntBASIC17.42■□□□□ 0.38
NPIPA2E9PIF3 AC091153.3-201ENST00000497885 472 ntTSL 2 BASIC17.42■□□□□ 0.38
NPIPA2E9PIF3 KRT18P35-201ENST00000510488 1269 ntBASIC17.42■□□□□ 0.38
NPIPA2E9PIF3 SLC39A2-203ENST00000554422 1259 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
NPIPA2E9PIF3 CFL2-205ENST00000555765 632 ntTSL 2 BASIC17.42■□□□□ 0.38
NPIPA2E9PIF3 CALM3-208ENST00000596362 1203 ntAPPRIS P1 TSL 2 BASIC17.42■□□□□ 0.38
NPIPA2E9PIF3 AL590326.2-201ENST00000625139 305 ntBASIC17.42■□□□□ 0.38
NPIPA2E9PIF3 RNF135-205ENST00000535306 2098 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
NPIPA2E9PIF3 LINC01465-201ENST00000408887 1940 ntBASIC17.42■□□□□ 0.38
NPIPA2E9PIF3 UBN1-201ENST00000262376 6252 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
NPIPA2E9PIF3 C19orf25-202ENST00000436106 2403 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
NPIPA2E9PIF3 PCDHA13-203ENST00000617769 2427 ntAPPRIS ALT2 BASIC17.42■□□□□ 0.38
NPIPA2E9PIF3 SLC29A4-202ENST00000396872 5685 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
NPIPA2E9PIF3 TOR1B-201ENST00000259339 2769 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
NPIPA2E9PIF3 CARD9-201ENST00000371732 2123 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
NPIPA2E9PIF3 UBE2F-205ENST00000414443 2100 ntTSL 2 BASIC17.42■□□□□ 0.38
NPIPA2E9PIF3 UTP4-201ENST00000314423 2322 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
NPIPA2E9PIF3 MSANTD2-202ENST00000374979 2349 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
NPIPA2E9PIF3 LRFN4-201ENST00000309602 2431 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
NPIPA2E9PIF3 STK10-201ENST00000176763 6060 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
NPIPA2E9PIF3 RBM15B-201ENST00000563281 6641 ntAPPRIS P1 BASIC17.41■□□□□ 0.38
NPIPA2E9PIF3 NEU4-201ENST00000325935 2288 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
NPIPA2E9PIF3 PIGQ-204ENST00000409527 1915 ntAPPRIS P1 TSL 2 BASIC17.41■□□□□ 0.38
NPIPA2E9PIF3 PPM1L-204ENST00000497343 1589 ntTSL 2 BASIC17.41■□□□□ 0.38
NPIPA2E9PIF3 AC006001.3-204ENST00000638711 2103 ntTSL 5 BASIC17.41■□□□□ 0.38
NPIPA2E9PIF3 SCO1-203ENST00000577427 1601 ntTSL 3 BASIC17.41■□□□□ 0.38
NPIPA2E9PIF3 HIST1H2APS4-201ENST00000362070 348 ntBASIC17.41■□□□□ 0.38
NPIPA2E9PIF3 TMEM53-201ENST00000372235 890 ntTSL 2 BASIC17.41■□□□□ 0.38
NPIPA2E9PIF3 AC073343.2-202ENST00000430844 532 ntTSL 4 BASIC17.41■□□□□ 0.38
NPIPA2E9PIF3 NME1-207ENST00000480143 964 ntTSL 2 BASIC17.41■□□□□ 0.38
NPIPA2E9PIF3 DYNLL1-205ENST00000548342 662 ntAPPRIS P1 TSL 2 BASIC17.41■□□□□ 0.38
NPIPA2E9PIF3 AC010203.1-204ENST00000548782 407 ntBASIC17.41■□□□□ 0.38
NPIPA2E9PIF3 AL160286.2-201ENST00000567150 934 ntBASIC17.41■□□□□ 0.38
NPIPA2E9PIF3 TRAPPC6A-201ENST00000006275 805 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
NPIPA2E9PIF3 ZNF821-221ENST00000611294 1833 ntTSL 3 BASIC17.41■□□□□ 0.38
NPIPA2E9PIF3 TMEM25-203ENST00000354284 1456 ntTSL 2 BASIC17.41■□□□□ 0.38
NPIPA2E9PIF3 AC004890.2-202ENST00000463462 1494 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
NPIPA2E9PIF3 CHAC1-205ENST00000617961 1498 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
NPIPA2E9PIF3 KRT18-207ENST00000550600 1696 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
NPIPA2E9PIF3 RUNX3-202ENST00000338888 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
NPIPA2E9PIF3 PWWP2AP1-201ENST00000429776 2273 ntBASIC17.41■□□□□ 0.38
NPIPA2E9PIF3 PSMD8-210ENST00000620216 1538 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
NPIPA2E9PIF3 CNTNAP3B-202ENST00000341990 2666 ntTSL 2 BASIC17.41■□□□□ 0.38
NPIPA2E9PIF3 DMWD-202ENST00000377735 3292 ntAPPRIS ALT2 TSL 5 BASIC17.41■□□□□ 0.38
NPIPA2E9PIF3 EDA-208ENST00000524573 1381 ntAPPRIS ALT1 TSL 1 (best) BASIC17.4■□□□□ 0.38
NPIPA2E9PIF3 MUS81-201ENST00000308110 2392 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
NPIPA2E9PIF3 CASR-204ENST00000638421 5088 ntAPPRIS P1 TSL 5 BASIC17.4■□□□□ 0.38
NPIPA2E9PIF3 CLIP3-206ENST00000593074 2080 ntAPPRIS P1 TSL 2 BASIC17.4■□□□□ 0.38
NPIPA2E9PIF3 PTAR1-205ENST00000472967 1689 ntTSL 2 BASIC17.4■□□□□ 0.38
NPIPA2E9PIF3 AL158211.5-201ENST00000623583 2518 ntBASIC17.4■□□□□ 0.38
NPIPA2E9PIF3 C14orf180-201ENST00000331952 1455 ntAPPRIS ALT2 TSL 2 BASIC17.4■□□□□ 0.38
NPIPA2E9PIF3 BCS1L-201ENST00000359273 1454 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
NPIPA2E9PIF3 MORF4L1-215ENST00000559345 1468 ntTSL 2 BASIC17.4■□□□□ 0.38
NPIPA2E9PIF3 LRRC23-202ENST00000323702 1208 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
NPIPA2E9PIF3 PSEN1-203ENST00000394157 1249 ntTSL 2 BASIC17.4■□□□□ 0.38
NPIPA2E9PIF3 GPM6B-204ENST00000398361 1033 ntTSL 2 BASIC17.4■□□□□ 0.38
NPIPA2E9PIF3 DERL1-203ENST00000419562 918 ntTSL 2 BASIC17.4■□□□□ 0.38
NPIPA2E9PIF3 AC103564.1-201ENST00000437330 562 ntTSL 5 BASIC17.4■□□□□ 0.38
NPIPA2E9PIF3 AL109797.1-201ENST00000452501 835 ntTSL 2 BASIC17.4■□□□□ 0.38
NPIPA2E9PIF3 Z85996.1-201ENST00000494644 937 ntBASIC17.4■□□□□ 0.38
NPIPA2E9PIF3 PSMD9-208ENST00000542602 516 ntTSL 3 BASIC17.4■□□□□ 0.38
NPIPA2E9PIF3 AC020911.2-202ENST00000588945 593 ntTSL 3 BASIC17.4■□□□□ 0.38
NPIPA2E9PIF3 FFAR4-203ENST00000604414 1142 ntTSL 3 BASIC17.4■□□□□ 0.38
NPIPA2E9PIF3 KCTD20-210ENST00000536244 5345 ntTSL 2 BASIC17.4■□□□□ 0.38
NPIPA2E9PIF3 PPP1CC-201ENST00000335007 2559 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
NPIPA2E9PIF3 FAM187A-202ENST00000412523 1748 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
NPIPA2E9PIF3 TBC1D4-204ENST00000431480 6347 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
NPIPA2E9PIF3 L2HGDH-203ENST00000421284 1958 ntAPPRIS P1 TSL 2 BASIC17.4■□□□□ 0.38
NPIPA2E9PIF3 TREX1-205ENST00000625293 1783 ntBASIC17.4■□□□□ 0.38
NPIPA2E9PIF3 SLC25A39-202ENST00000377095 1565 ntAPPRIS ALT1 TSL 1 (best) BASIC17.4■□□□□ 0.38
NPIPA2E9PIF3 CSNK1D-203ENST00000392334 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC17.4■□□□□ 0.38
NPIPA2E9PIF3 CRTC1-204ENST00000601916 1834 ntTSL 5 BASIC17.4■□□□□ 0.38
NPIPA2E9PIF3 SERPINH1-212ENST00000530284 1358 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
NPIPA2E9PIF3 HS3ST3A1-201ENST00000284110 2527 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
NPIPA2E9PIF3 FAM46A-203ENST00000369756 5537 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
NPIPA2E9PIF3 GPR139-202ENST00000570682 1613 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.38
NPIPA2E9PIF3 FNBP1-203ENST00000443566 5227 ntTSL 1 (best) BASIC17.39■□□□□ 0.38
NPIPA2E9PIF3 AC073508.3-201ENST00000619697 1419 ntBASIC17.39■□□□□ 0.38
NPIPA2E9PIF3 PLCG1-202ENST00000373271 7395 ntAPPRIS ALT1 TSL 1 (best) BASIC17.39■□□□□ 0.37
NPIPA2E9PIF3 AHCYL1-203ENST00000393614 4313 ntTSL 2 BASIC17.39■□□□□ 0.37
NPIPA2E9PIF3 TLE3-214ENST00000558939 6004 ntAPPRIS P4 TSL 1 (best) BASIC17.39■□□□□ 0.37
NPIPA2E9PIF3 ARL5A-201ENST00000295087 5326 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
NPIPA2E9PIF3 OGFOD2-222ENST00000545317 1481 ntTSL 2 BASIC17.39■□□□□ 0.37
NPIPA2E9PIF3 EFR3A-201ENST00000254624 5438 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
NPIPA2E9PIF3 TFRC-202ENST00000392396 5032 ntAPPRIS P3 TSL 1 (best) BASIC17.39■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 24.7 ms