Protein–RNA interactions for Protein: Q8NCR9

CLRN3, Clarin-3, humanhuman

Predictions only

Length 226 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN3Q8NCR9 FCRLB-205ENST00000367948 1977 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
CLRN3Q8NCR9 JAG2-202ENST00000347004 5720 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
CLRN3Q8NCR9 LRRC45-201ENST00000306688 2701 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
CLRN3Q8NCR9 PIK3R2-207ENST00000617130 2187 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
CLRN3Q8NCR9 AP2M1-202ENST00000382456 2091 ntAPPRIS ALT1 TSL 1 (best) BASIC20.37■□□□□ 0.85
CLRN3Q8NCR9 GIT1-210ENST00000579937 2798 ntTSL 2 BASIC20.37■□□□□ 0.85
CLRN3Q8NCR9 AC079834.2-201ENST00000609776 1949 ntBASIC20.37■□□□□ 0.85
CLRN3Q8NCR9 FSD1-201ENST00000221856 1831 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
CLRN3Q8NCR9 AC091060.1-201ENST00000623524 1766 ntBASIC20.36■□□□□ 0.85
CLRN3Q8NCR9 NPAS3-201ENST00000346562 5847 ntAPPRIS P3 TSL 1 (best) BASIC20.36■□□□□ 0.85
CLRN3Q8NCR9 CLK2-203ENST00000368361 2166 ntAPPRIS ALT1 TSL 1 (best) BASIC20.36■□□□□ 0.85
CLRN3Q8NCR9 FJX1-201ENST00000317811 2450 ntAPPRIS P1 BASIC20.36■□□□□ 0.85
CLRN3Q8NCR9 PEX5-205ENST00000420616 2477 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
CLRN3Q8NCR9 CNIH2-203ENST00000528852 1524 ntAPPRIS ALT1 TSL 1 (best) BASIC20.36■□□□□ 0.85
CLRN3Q8NCR9 ZC3H14-202ENST00000302216 2560 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
CLRN3Q8NCR9 AKAP8L-208ENST00000595465 1933 ntTSL 2 BASIC20.35■□□□□ 0.85
CLRN3Q8NCR9 TRIM28-202ENST00000341753 2709 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
CLRN3Q8NCR9 ZDHHC16-204ENST00000370842 1877 ntAPPRIS ALT1 TSL 5 BASIC20.35■□□□□ 0.85
CLRN3Q8NCR9 RAX-201ENST00000256852 2935 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
CLRN3Q8NCR9 DLG3-203ENST00000374360 5905 ntAPPRIS P2 TSL 1 (best) BASIC20.34■□□□□ 0.85
CLRN3Q8NCR9 THRA-209ENST00000584985 2421 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
CLRN3Q8NCR9 TARSL2-207ENST00000615656 2356 ntAPPRIS ALT2 TSL 5 BASIC20.34■□□□□ 0.85
CLRN3Q8NCR9 MSX1-201ENST00000382723 1939 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
CLRN3Q8NCR9 SRP68-201ENST00000307877 2649 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
CLRN3Q8NCR9 C11orf95-202ENST00000433688 5716 ntAPPRIS P1 TSL 5 BASIC20.33■□□□□ 0.84
CLRN3Q8NCR9 C11orf63-201ENST00000227349 3147 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
CLRN3Q8NCR9 TMEM64-201ENST00000418210 4663 ntTSL 2 BASIC20.33■□□□□ 0.84
CLRN3Q8NCR9 NDEL1-201ENST00000334527 2372 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
CLRN3Q8NCR9 ZFAND2B-208ENST00000409594 2021 ntTSL 2 BASIC20.32■□□□□ 0.84
CLRN3Q8NCR9 BRSK2-212ENST00000531197 3163 ntAPPRIS ALT2 TSL 1 (best) BASIC20.32■□□□□ 0.84
CLRN3Q8NCR9 CDK9-201ENST00000373264 2463 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
CLRN3Q8NCR9 HIRA-202ENST00000340170 3395 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
CLRN3Q8NCR9 ATPAF1-202ENST00000371937 1827 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
CLRN3Q8NCR9 FEZ2-203ENST00000379245 2097 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
CLRN3Q8NCR9 SHOX2-201ENST00000389589 2072 ntAPPRIS P3 TSL 1 (best) BASIC20.31■□□□□ 0.84
CLRN3Q8NCR9 SP5-201ENST00000375281 2033 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
CLRN3Q8NCR9 RAX2-202ENST00000555978 2145 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
CLRN3Q8NCR9 CADPS-203ENST00000383710 5471 ntAPPRIS ALT2 TSL 1 (best) BASIC20.31■□□□□ 0.84
CLRN3Q8NCR9 EGR4-201ENST00000436467 2377 ntAPPRIS ALT2 TSL 1 (best) BASIC20.31■□□□□ 0.84
CLRN3Q8NCR9 RDX-210ENST00000530301 1549 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
CLRN3Q8NCR9 IL17RE-203ENST00000421412 2158 ntAPPRIS ALT2 TSL 1 (best) BASIC20.31■□□□□ 0.84
CLRN3Q8NCR9 DSG2-201ENST00000261590 5831 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
CLRN3Q8NCR9 ATF4-201ENST00000337304 2019 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
CLRN3Q8NCR9 GDF1-201ENST00000247005 2517 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
CLRN3Q8NCR9 CERS1-204ENST00000623882 2517 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
CLRN3Q8NCR9 HAS1-205ENST00000601714 2086 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
CLRN3Q8NCR9 FAM171A2-201ENST00000293443 3160 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
CLRN3Q8NCR9 TOP1MT-208ENST00000519148 1868 ntTSL 2 BASIC20.28■□□□□ 0.84
CLRN3Q8NCR9 KCTD5-201ENST00000301738 2482 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
CLRN3Q8NCR9 TMEM150C-201ENST00000449862 1990 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
CLRN3Q8NCR9 FAM107B-211ENST00000468747 2633 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
CLRN3Q8NCR9 SLBP-206ENST00000489418 1977 ntAPPRIS P2 TSL 1 (best) BASIC20.26■□□□□ 0.83
CLRN3Q8NCR9 ALG2-203ENST00000476832 1880 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
CLRN3Q8NCR9 HDHD5-202ENST00000336737 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
CLRN3Q8NCR9 HOMER1-202ENST00000334082 5881 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
CLRN3Q8NCR9 PCSK6-215ENST00000611967 3336 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
CLRN3Q8NCR9 NR6A1-203ENST00000416460 1898 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
CLRN3Q8NCR9 TMEM202-AS1-202ENST00000565181 2325 ntBASIC20.25■□□□□ 0.83
CLRN3Q8NCR9 HOMER2-202ENST00000450735 1950 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
CLRN3Q8NCR9 C11orf80-218ENST00000540737 1786 ntAPPRIS ALT2 TSL 2 BASIC20.25■□□□□ 0.83
CLRN3Q8NCR9 PCOLCE2-201ENST00000295992 2021 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
CLRN3Q8NCR9 KAT8-206ENST00000543774 1846 ntAPPRIS P1 TSL 5 BASIC20.25■□□□□ 0.83
CLRN3Q8NCR9 CDH23-208ENST00000461841 2000 ntTSL 5 BASIC20.24■□□□□ 0.83
CLRN3Q8NCR9 CMAS-201ENST00000229329 1787 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
CLRN3Q8NCR9 HAGHL-204ENST00000549114 1820 ntTSL 5 BASIC20.23■□□□□ 0.83
CLRN3Q8NCR9 SNF8-202ENST00000502492 2319 ntAPPRIS P3 TSL 1 (best) BASIC20.22■□□□□ 0.83
CLRN3Q8NCR9 UNCX-201ENST00000316333 2048 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
CLRN3Q8NCR9 HOXA10-201ENST00000283921 2541 ntAPPRIS P2 TSL 1 (best) BASIC20.22■□□□□ 0.83
CLRN3Q8NCR9 OLIG2-202ENST00000382357 2578 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
CLRN3Q8NCR9 REXO4-201ENST00000371935 1899 ntTSL 3 BASIC20.22■□□□□ 0.83
CLRN3Q8NCR9 CTDNEP1-201ENST00000318988 1549 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
CLRN3Q8NCR9 TMEM64-203ENST00000458549 4997 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
CLRN3Q8NCR9 EPS8L1-205ENST00000586329 2130 ntTSL 5 BASIC20.21■□□□□ 0.83
CLRN3Q8NCR9 RUNX2-203ENST00000371436 1588 ntAPPRIS ALT2 TSL 5 BASIC20.21■□□□□ 0.83
CLRN3Q8NCR9 CHST14-202ENST00000559991 1968 ntTSL 5 BASIC20.2■□□□□ 0.82
CLRN3Q8NCR9 HABP4-202ENST00000375251 2304 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
CLRN3Q8NCR9 CABLES1-201ENST00000256925 5002 ntAPPRIS P4 TSL 1 (best) BASIC20.2■□□□□ 0.82
CLRN3Q8NCR9 HES7-202ENST00000541682 1674 ntAPPRIS ALT1 TSL 1 (best) BASIC20.19■□□□□ 0.82
CLRN3Q8NCR9 SRR-201ENST00000344595 2728 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
CLRN3Q8NCR9 ATP5A1-220ENST00000593152 2258 ntTSL 2 BASIC20.19■□□□□ 0.82
CLRN3Q8NCR9 FAM89A-201ENST00000366654 1495 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
CLRN3Q8NCR9 GIPC1-202ENST00000393028 1483 ntTSL 3 BASIC20.19■□□□□ 0.82
CLRN3Q8NCR9 ZBTB22-208ENST00000431845 2651 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
CLRN3Q8NCR9 CBLN2-209ENST00000585159 2406 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
CLRN3Q8NCR9 HAUS7-201ENST00000370210 1593 ntAPPRIS ALT2 TSL 2 BASIC20.19■□□□□ 0.82
CLRN3Q8NCR9 ACAA1-220ENST00000627515 1862 ntTSL 5 BASIC20.19■□□□□ 0.82
CLRN3Q8NCR9 VRK2-202ENST00000412104 1916 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
CLRN3Q8NCR9 DENND5A-201ENST00000328194 5031 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
CLRN3Q8NCR9 AGBL5-201ENST00000323064 2382 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
CLRN3Q8NCR9 P2RX5-201ENST00000225328 2309 ntAPPRIS P3 TSL 1 (best) BASIC20.18■□□□□ 0.82
CLRN3Q8NCR9 C11orf80-210ENST00000527634 1666 ntAPPRIS ALT2 TSL 5 BASIC20.18■□□□□ 0.82
CLRN3Q8NCR9 U2AF2-202ENST00000450554 3022 ntAPPRIS ALT1 TSL 1 (best) BASIC20.18■□□□□ 0.82
CLRN3Q8NCR9 FSD1L-208ENST00000495708 1906 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
CLRN3Q8NCR9 CPOX-201ENST00000264193 2825 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
CLRN3Q8NCR9 WRNIP1-205ENST00000618555 2651 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
CLRN3Q8NCR9 CDIPT-201ENST00000219789 2353 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
CLRN3Q8NCR9 NKX3-2-201ENST00000382438 2801 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
CLRN3Q8NCR9 PPP1R26-201ENST00000356818 4932 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
CLRN3Q8NCR9 SLC16A8-201ENST00000320521 1878 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
CLRN3Q8NCR9 AC145676.1-201ENST00000514988 2004 ntBASIC20.16■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 121.8 ms