Protein–RNA interactions for Protein: P49711

CTCF, Transcriptional repressor CTCF, humanhuman

Predicted RBP Predictions only

Length 727 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTCFP49711 CDKN2A-214ENST00000579755 1283 ntAPPRIS P1 TSL 1 (best) BASIC30■■■□□ 2.39
CTCFP49711 PLEKHJ1-213ENST00000591099 1092 ntTSL 2 BASIC30■■■□□ 2.39
CTCFP49711 ZEB1-AS1-205ENST00000605946 382 ntTSL 5 BASIC30■■■□□ 2.39
CTCFP49711 GRASP-206ENST00000552049 1688 ntTSL 1 (best) BASIC30■■■□□ 2.39
CTCFP49711 CAPNS1-201ENST00000246533 1918 ntAPPRIS P2 TSL 1 (best) BASIC30■■■□□ 2.39
CTCFP49711 PCYT2-206ENST00000571105 1628 ntTSL 5 BASIC30■■■□□ 2.39
CTCFP49711 TSPAN3-203ENST00000424443 1530 ntTSL 2 BASIC29.99■■■□□ 2.39
CTCFP49711 CPNE1-203ENST00000397442 1695 ntTSL 5 BASIC29.98■■■□□ 2.39
CTCFP49711 MDK-203ENST00000395566 828 ntAPPRIS P2 TSL 1 (best) BASIC29.98■■■□□ 2.39
CTCFP49711 ARL6IP4-208ENST00000439686 796 ntAPPRIS ALT2 TSL 3 BASIC29.98■■■□□ 2.39
CTCFP49711 FAM120C-203ENST00000477084 1140 ntAPPRIS ALT2 TSL 1 (best) BASIC29.98■■■□□ 2.39
CTCFP49711 AC064853.2-201ENST00000641246 144 ntAPPRIS P1 BASIC29.98■■■□□ 2.39
CTCFP49711 QDPR-202ENST00000428702 1278 ntTSL 2 BASIC29.97■■■□□ 2.39
CTCFP49711 BHLHE23-202ENST00000612929 1109 ntBASIC29.97■■■□□ 2.39
CTCFP49711 EPB41L4A-AS2-201ENST00000623705 1396 ntBASIC29.97■■■□□ 2.39
CTCFP49711 BMP7-202ENST00000395864 1746 ntTSL 5 BASIC29.96■■■□□ 2.39
CTCFP49711 CD63-201ENST00000257857 1070 ntAPPRIS P1 TSL 1 (best) BASIC29.96■■■□□ 2.39
CTCFP49711 CENPX-202ENST00000392359 805 ntAPPRIS P1 TSL 2 BASIC29.96■■■□□ 2.39
CTCFP49711 AC009511.2-201ENST00000545904 679 ntTSL 2 BASIC29.96■■■□□ 2.39
CTCFP49711 AC008406.3-201ENST00000620001 1374 ntBASIC29.95■■■□□ 2.39
CTCFP49711 PEMT-202ENST00000395781 1050 ntTSL 2 BASIC29.95■■■□□ 2.39
CTCFP49711 AC116025.2-201ENST00000576632 443 ntTSL 3 BASIC29.95■■■□□ 2.39
CTCFP49711 AC010980.1-201ENST00000587192 1142 ntBASIC29.94■■■□□ 2.38
CTCFP49711 PKIG-206ENST00000372892 1338 ntAPPRIS P1 TSL 2 BASIC29.94■■■□□ 2.38
CTCFP49711 TCEA1-214ENST00000640382 1234 ntTSL 5 BASIC29.93■■■□□ 2.38
CTCFP49711 AC079305.3-201ENST00000455416 218 ntTSL 5 BASIC29.92■■■□□ 2.38
CTCFP49711 AC133552.2-201ENST00000619106 1032 ntBASIC29.92■■■□□ 2.38
CTCFP49711 AC074183.2-201ENST00000623112 922 ntBASIC29.92■■■□□ 2.38
CTCFP49711 CFAP73-201ENST00000335621 1514 ntAPPRIS P1 TSL 5 BASIC29.91■■■□□ 2.38
CTCFP49711 PSMG3-202ENST00000288607 1391 ntAPPRIS P1 TSL 1 (best) BASIC29.91■■■□□ 2.38
CTCFP49711 TMEM80-202ENST00000397512 1572 ntAPPRIS ALT2 TSL 1 (best) BASIC29.91■■■□□ 2.38
CTCFP49711 YBX1P4-201ENST00000392794 808 ntBASIC29.91■■■□□ 2.38
CTCFP49711 C9orf50-201ENST00000372478 1620 ntAPPRIS P2 TSL 2 BASIC29.91■■■□□ 2.38
CTCFP49711 LACTBL1-202ENST00000618559 1500 ntAPPRIS ALT2 TSL 5 BASIC29.91■■■□□ 2.38
CTCFP49711 FOXP1-201ENST00000318779 843 ntTSL 1 (best) BASIC29.9■■■□□ 2.38
CTCFP49711 AC009831.1-201ENST00000580420 1582 ntBASIC29.89■■■□□ 2.38
CTCFP49711 UBE2D2-205ENST00000505548 1113 ntTSL 1 (best) BASIC29.88■■■□□ 2.37
CTCFP49711 PYCR1-203ENST00000402252 1346 ntTSL 2 BASIC29.88■■■□□ 2.37
CTCFP49711 AC073934.1-201ENST00000490314 495 ntTSL 4 BASIC29.87■■■□□ 2.37
CTCFP49711 IZUMO4-202ENST00000395301 1021 ntAPPRIS ALT2 TSL 1 (best) BASIC29.86■■■□□ 2.37
CTCFP49711 PKNOX2-AS1-201ENST00000532316 586 ntTSL 3 BASIC29.86■■■□□ 2.37
CTCFP49711 AC007029.1-201ENST00000604183 313 ntBASIC29.86■■■□□ 2.37
CTCFP49711 GAL3ST3-203ENST00000527878 1599 ntAPPRIS P1 TSL 1 (best) BASIC29.86■■■□□ 2.37
CTCFP49711 HAUS7-211ENST00000626181 414 ntAPPRIS ALT2 TSL 5 BASIC29.85■■■□□ 2.37
CTCFP49711 NOG-201ENST00000332822 1892 ntAPPRIS P1 BASIC29.85■■■□□ 2.37
CTCFP49711 TMEM55B-202ENST00000398020 1696 ntAPPRIS ALT1 TSL 1 (best) BASIC29.84■■■□□ 2.37
CTCFP49711 CDC34-201ENST00000215574 1471 ntAPPRIS P1 TSL 1 (best) BASIC29.82■■■□□ 2.36
CTCFP49711 ABHD17B-202ENST00000377041 1312 ntAPPRIS P4 TSL 1 (best) BASIC29.82■■■□□ 2.36
CTCFP49711 BARX1-201ENST00000253968 1533 ntAPPRIS P1 TSL 1 (best) BASIC29.81■■■□□ 2.36
CTCFP49711 EVA1B-201ENST00000270824 1054 ntAPPRIS P1 TSL 2 BASIC29.81■■■□□ 2.36
CTCFP49711 AL355490.1-201ENST00000445808 805 ntTSL 3 BASIC29.81■■■□□ 2.36
CTCFP49711 SLC2A4RG-201ENST00000266077 1731 ntAPPRIS P1 TSL 1 (best) BASIC29.8■■■□□ 2.36
CTCFP49711 ZDHHC3-203ENST00000342790 1336 ntTSL 5 BASIC29.8■■■□□ 2.36
CTCFP49711 NAXE-203ENST00000368235 1125 ntAPPRIS P1 TSL 1 (best) BASIC29.8■■■□□ 2.36
CTCFP49711 MAP4K3-211ENST00000484274 407 ntTSL 2 BASIC29.8■■■□□ 2.36
CTCFP49711 ZNF302-211ENST00000509528 577 ntTSL 4 BASIC29.8■■■□□ 2.36
CTCFP49711 AC103834.1-201ENST00000520383 144 ntBASIC29.8■■■□□ 2.36
CTCFP49711 SDCCAG3-202ENST00000357365 2304 ntAPPRIS P4 TSL 5 BASIC29.79■■■□□ 2.36
CTCFP49711 UBALD1-206ENST00000590965 1462 ntTSL 2 BASIC29.79■■■□□ 2.36
CTCFP49711 ADAT3-201ENST00000329478 1620 ntAPPRIS P1 TSL 1 (best) BASIC29.78■■■□□ 2.36
CTCFP49711 MPC1-201ENST00000341756 976 ntTSL 1 (best) BASIC29.78■■■□□ 2.36
CTCFP49711 LRP11-202ENST00000367368 1042 ntTSL 2 BASIC29.78■■■□□ 2.36
CTCFP49711 MIR638-201ENST00000385237 100 ntBASIC29.78■■■□□ 2.36
CTCFP49711 AQP1-203ENST00000409899 1009 ntTSL 1 (best) BASIC29.78■■■□□ 2.36
CTCFP49711 FLVCR1-AS1-203ENST00000426161 892 ntTSL 1 (best) BASIC29.78■■■□□ 2.36
CTCFP49711 TMEM165-204ENST00000506198 828 ntTSL 2 BASIC29.78■■■□□ 2.36
CTCFP49711 AC126177.7-201ENST00000547904 679 ntBASIC29.78■■■□□ 2.36
CTCFP49711 MOB2-207ENST00000614710 705 ntTSL 5 BASIC29.78■■■□□ 2.36
CTCFP49711 MPC1-206ENST00000621630 977 ntAPPRIS ALT1 TSL 5 BASIC29.78■■■□□ 2.36
CTCFP49711 MPC1-207ENST00000621685 1192 ntTSL 5 BASIC29.78■■■□□ 2.36
CTCFP49711 NADK2-202ENST00000381937 2243 ntAPPRIS P1 TSL 2 BASIC29.77■■■□□ 2.36
CTCFP49711 MIR219A2-201ENST00000608502 1504 ntBASIC29.77■■■□□ 2.36
CTCFP49711 AC104002.3-202ENST00000557170 1100 ntTSL 3 BASIC29.77■■■□□ 2.36
CTCFP49711 LRMDA-215ENST00000611255 1040 ntAPPRIS ALT2 TSL 5 BASIC29.77■■■□□ 2.36
CTCFP49711 MIR1-1HG-202ENST00000624914 1220 ntTSL 1 (best) BASIC29.77■■■□□ 2.36
CTCFP49711 TUBB6-201ENST00000317702 2064 ntAPPRIS P1 TSL 1 (best) BASIC29.76■■■□□ 2.36
CTCFP49711 VIPR2-204ENST00000421760 717 ntTSL 3 BASIC29.75■■■□□ 2.35
CTCFP49711 RHOBTB3-206ENST00000506817 1432 ntTSL 2 BASIC29.75■■■□□ 2.35
CTCFP49711 LSM6-202ENST00000502781 1352 ntAPPRIS P1 TSL 1 (best) BASIC29.75■■■□□ 2.35
CTCFP49711 KISS1-201ENST00000367194 709 ntAPPRIS P2 TSL 1 (best) BASIC29.74■■■□□ 2.35
CTCFP49711 PEMT-206ENST00000435340 960 ntTSL 5 BASIC29.74■■■□□ 2.35
CTCFP49711 C16orf52-207ENST00000569656 1257 ntTSL 5 BASIC29.74■■■□□ 2.35
CTCFP49711 STK25-202ENST00000401869 2251 ntAPPRIS P1 TSL 1 (best) BASIC29.73■■■□□ 2.35
CTCFP49711 BEX3-202ENST00000372634 753 ntTSL 2 BASIC29.73■■■□□ 2.35
CTCFP49711 C14orf80-211ENST00000450383 1107 ntAPPRIS ALT2 TSL 5 BASIC29.73■■■□□ 2.35
CTCFP49711 GSX2-202ENST00000503800 1181 ntTSL 5 BASIC29.73■■■□□ 2.35
CTCFP49711 TMEM170A-202ENST00000561878 1072 ntAPPRIS P1 TSL 1 (best) BASIC29.73■■■□□ 2.35
CTCFP49711 AC009163.4-201ENST00000567194 530 ntAPPRIS P1 TSL 2 BASIC29.73■■■□□ 2.35
CTCFP49711 REST-210ENST00000638187 1334 ntTSL 5 BASIC29.72■■■□□ 2.35
CTCFP49711 TSPAN11-203ENST00000545802 1649 ntTSL 1 (best) BASIC29.72■■■□□ 2.35
CTCFP49711 WBP1-201ENST00000233615 1294 ntAPPRIS P2 TSL 1 (best) BASIC29.72■■■□□ 2.35
CTCFP49711 DUX4L9-201ENST00000449051 1259 ntBASIC29.72■■■□□ 2.35
CTCFP49711 PITX3-202ENST00000539804 1187 ntAPPRIS P1 TSL 5 BASIC29.72■■■□□ 2.35
CTCFP49711 TWIST1-201ENST00000242261 1666 ntAPPRIS P1 TSL 1 (best) BASIC29.72■■■□□ 2.35
CTCFP49711 SOD3-201ENST00000382120 1526 ntAPPRIS P1 TSL 1 (best) BASIC29.71■■■□□ 2.35
CTCFP49711 RPS2-210ENST00000530225 765 ntTSL 2 BASIC29.71■■■□□ 2.35
CTCFP49711 SAMD1-202ENST00000533683 2164 ntAPPRIS P5 TSL 1 (best) BASIC29.7■■■□□ 2.35
CTCFP49711 HNRNPAB-204ENST00000504898 1785 ntAPPRIS P4 TSL 1 (best) BASIC29.7■■■□□ 2.35
CTCFP49711 H2AFY-204ENST00000423969 924 ntTSL 2 BASIC29.7■■■□□ 2.35
CTCFP49711 C17orf49-201ENST00000439424 850 ntAPPRIS P3 TSL 1 (best) BASIC29.7■■■□□ 2.35
Retrieved 100 of 98,524 protein–RNA pairs in 8.9 ms