Protein–RNA interactions for Protein: O15259

NPHP1, Nephrocystin-1, humanhuman

Predictions only

Length 732 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP1O15259 NKX2-1-204ENST00000522719 1417 ntAPPRIS P1 TSL 1 (best) BASIC32.16■■■□□ 2.74
NPHP1O15259 DCDC2C-201ENST00000399143 1476 ntAPPRIS P1 TSL 5 BASIC32.16■■■□□ 2.74
NPHP1O15259 RPS2-210ENST00000530225 765 ntTSL 2 BASIC32.15■■■□□ 2.74
NPHP1O15259 TXNL4A-208ENST00000588162 752 ntTSL 2 BASIC32.15■■■□□ 2.74
NPHP1O15259 WSB2-211ENST00000544233 2503 ntTSL 2 BASIC32.14■■■□□ 2.74
NPHP1O15259 CBX4-201ENST00000269397 2664 ntAPPRIS P2 TSL 1 (best) BASIC32.14■■■□□ 2.74
NPHP1O15259 GPR137-202ENST00000377702 1478 ntTSL 1 (best) BASIC32.14■■■□□ 2.74
NPHP1O15259 MORF4L1-203ENST00000426013 1880 ntAPPRIS P1 TSL 1 (best) BASIC32.13■■■□□ 2.73
NPHP1O15259 PLEKHJ1-204ENST00000586608 935 ntTSL 3 BASIC32.13■■■□□ 2.73
NPHP1O15259 POU3F1-201ENST00000373012 2184 ntAPPRIS P1 BASIC32.12■■■□□ 2.73
NPHP1O15259 MXD3-208ENST00000513063 861 ntAPPRIS P1 TSL 5 BASIC32.12■■■□□ 2.73
NPHP1O15259 SLC15A4-201ENST00000266771 2779 ntAPPRIS P1 TSL 1 (best) BASIC32.11■■■□□ 2.73
NPHP1O15259 CCDC160-202ENST00000517294 1790 ntAPPRIS P1 TSL 5 BASIC32.11■■■□□ 2.73
NPHP1O15259 AQP1-203ENST00000409899 1009 ntTSL 1 (best) BASIC32.1■■■□□ 2.73
NPHP1O15259 SAP25-204ENST00000622764 1031 ntAPPRIS ALT2 TSL 5 BASIC32.1■■■□□ 2.73
NPHP1O15259 OVOL2-201ENST00000278780 1555 ntAPPRIS P1 TSL 1 (best) BASIC32.1■■■□□ 2.73
NPHP1O15259 TAZ-201ENST00000369776 1596 ntTSL 1 (best) BASIC32.09■■■□□ 2.73
NPHP1O15259 MKNK2-202ENST00000309340 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC32.09■■■□□ 2.73
NPHP1O15259 MKRN1-202ENST00000443720 1601 ntAPPRIS ALT2 TSL 1 (best) BASIC32.08■■■□□ 2.73
NPHP1O15259 TSPY13P-201ENST00000338964 914 ntBASIC32.08■■■□□ 2.73
NPHP1O15259 MCCD1-201ENST00000376191 955 ntAPPRIS P1 TSL 1 (best) BASIC32.08■■■□□ 2.73
NPHP1O15259 IZUMO4-202ENST00000395301 1021 ntAPPRIS ALT2 TSL 1 (best) BASIC32.08■■■□□ 2.73
NPHP1O15259 CMPK2-203ENST00000458098 1224 ntTSL 1 (best) BASIC32.08■■■□□ 2.73
NPHP1O15259 AC126177.7-201ENST00000547904 679 ntBASIC32.08■■■□□ 2.73
NPHP1O15259 ACOT1-202ENST00000557556 1271 ntTSL 1 (best) BASIC32.08■■■□□ 2.73
NPHP1O15259 SLC35D2-201ENST00000253270 1613 ntAPPRIS P1 TSL 1 (best) BASIC32.08■■■□□ 2.73
NPHP1O15259 SLC12A2-202ENST00000343225 5509 ntAPPRIS ALT2 TSL 1 (best) BASIC32.07■■■□□ 2.72
NPHP1O15259 LSM6-202ENST00000502781 1352 ntAPPRIS P1 TSL 1 (best) BASIC32.07■■■□□ 2.72
NPHP1O15259 G6PC3-201ENST00000269097 1533 ntAPPRIS P1 TSL 1 (best) BASIC32.06■■■□□ 2.72
NPHP1O15259 QDPR-208ENST00000513615 1188 ntTSL 2 BASIC32.06■■■□□ 2.72
NPHP1O15259 YBX2-201ENST00000007699 1590 ntAPPRIS P1 TSL 1 (best) BASIC32.06■■■□□ 2.72
NPHP1O15259 AC092296.2-201ENST00000589470 999 ntBASIC32.05■■■□□ 2.72
NPHP1O15259 ARHGEF7-205ENST00000375739 5375 ntTSL 1 (best) BASIC32.04■■■□□ 2.72
NPHP1O15259 KRT18P60-201ENST00000312876 1297 ntBASIC32.04■■■□□ 2.72
NPHP1O15259 C20orf24-203ENST00000373852 1059 ntTSL 1 (best) BASIC32.04■■■□□ 2.72
NPHP1O15259 LINC01770-201ENST00000417917 634 ntTSL 2 BASIC32.04■■■□□ 2.72
NPHP1O15259 RASL10A-202ENST00000401450 1720 ntTSL 2 BASIC32.03■■■□□ 2.72
NPHP1O15259 C14orf80-203ENST00000354560 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC32.03■■■□□ 2.72
NPHP1O15259 WDR86-204ENST00000477459 1428 ntTSL 2 BASIC32.03■■■□□ 2.72
NPHP1O15259 ZBTB10-204ENST00000455036 5458 ntAPPRIS P3 TSL 2 BASIC32.03■■■□□ 2.72
NPHP1O15259 ENDOG-201ENST00000372642 1172 ntAPPRIS P1 TSL 1 (best) BASIC32.02■■■□□ 2.72
NPHP1O15259 AC004987.1-201ENST00000428627 508 ntBASIC32.02■■■□□ 2.72
NPHP1O15259 PEX7-203ENST00000541292 945 ntTSL 5 BASIC32.02■■■□□ 2.72
NPHP1O15259 GFER-205ENST00000569451 517 ntTSL 5 BASIC32.02■■■□□ 2.72
NPHP1O15259 GNG10-201ENST00000374293 1491 ntAPPRIS P1 TSL 1 (best) BASIC32.02■■■□□ 2.72
NPHP1O15259 MEST-211ENST00000437945 1455 ntTSL 5 BASIC32.02■■■□□ 2.72
NPHP1O15259 CRELD2-203ENST00000404488 1577 ntAPPRIS ALT2 TSL 1 (best) BASIC32.02■■■□□ 2.72
NPHP1O15259 ATP5G2P3-201ENST00000429083 425 ntBASIC32.01■■■□□ 2.71
NPHP1O15259 ECEL1P2-201ENST00000461596 1295 ntBASIC32.01■■■□□ 2.71
NPHP1O15259 INPP4A-203ENST00000409463 1565 ntTSL 1 (best) BASIC32.01■■■□□ 2.71
NPHP1O15259 FADS3-201ENST00000278829 1779 ntAPPRIS P1 TSL 1 (best) BASIC32.01■■■□□ 2.71
NPHP1O15259 RUNX2-205ENST00000465038 1770 ntAPPRIS P4 TSL 5 BASIC32.01■■■□□ 2.71
NPHP1O15259 ZMYND19-201ENST00000298585 1375 ntAPPRIS P1 TSL 1 (best) BASIC32■■■□□ 2.71
NPHP1O15259 OXLD1-201ENST00000374741 620 ntAPPRIS P1 TSL 1 (best) BASIC32■■■□□ 2.71
NPHP1O15259 CCDC37-AS1-202ENST00000506660 986 ntTSL 1 (best) BASIC32■■■□□ 2.71
NPHP1O15259 FOXO6-202ENST00000641094 1476 ntAPPRIS P1 BASIC31.99■■■□□ 2.71
NPHP1O15259 SLC16A11-201ENST00000308009 1803 ntAPPRIS P2 TSL 1 (best) BASIC31.99■■■□□ 2.71
NPHP1O15259 ATPAF1-202ENST00000371937 1827 ntAPPRIS P1 TSL 1 (best) BASIC31.99■■■□□ 2.71
NPHP1O15259 ST7-208ENST00000393451 2110 ntAPPRIS P1 TSL 1 (best) BASIC31.99■■■□□ 2.71
NPHP1O15259 MAP4K3-211ENST00000484274 407 ntTSL 2 BASIC31.98■■■□□ 2.71
NPHP1O15259 OPRD1-202ENST00000621425 1217 ntTSL 1 (best) BASIC31.98■■■□□ 2.71
NPHP1O15259 MAZ-205ENST00000562337 1574 ntTSL 3 BASIC31.97■■■□□ 2.71
NPHP1O15259 AC092647.5-201ENST00000426595 1732 ntAPPRIS P1 TSL 5 BASIC31.97■■■□□ 2.71
NPHP1O15259 SLC16A8-201ENST00000320521 1878 ntAPPRIS P1 TSL 1 (best) BASIC31.96■■■□□ 2.71
NPHP1O15259 ADGRB2-204ENST00000398542 5176 ntTSL 5 BASIC31.96■■■□□ 2.71
NPHP1O15259 DSG2-202ENST00000585206 1081 ntTSL 2 BASIC31.96■■■□□ 2.71
NPHP1O15259 RAB4B-203ENST00000594800 1173 ntAPPRIS P1 TSL 5 BASIC31.96■■■□□ 2.71
NPHP1O15259 CIC-201ENST00000160740 6111 ntAPPRIS ALT1 TSL 5 BASIC31.96■■■□□ 2.71
NPHP1O15259 TPRG1L-202ENST00000378344 2414 ntAPPRIS P1 TSL 2 BASIC31.96■■■□□ 2.71
NPHP1O15259 SOD3-201ENST00000382120 1526 ntAPPRIS P1 TSL 1 (best) BASIC31.95■■■□□ 2.7
NPHP1O15259 KLHL35-204ENST00000539798 1936 ntAPPRIS P1 TSL 1 (best) BASIC31.94■■■□□ 2.7
NPHP1O15259 SLC9A3-AS1-207ENST00000607286 1357 ntTSL 5 BASIC31.94■■■□□ 2.7
NPHP1O15259 CIB2-201ENST00000258930 1598 ntAPPRIS P1 TSL 1 (best) BASIC31.94■■■□□ 2.7
NPHP1O15259 EID2-201ENST00000390658 1629 ntAPPRIS P1 BASIC31.94■■■□□ 2.7
NPHP1O15259 MZT2B-201ENST00000281871 933 ntAPPRIS P3 TSL 1 (best) BASIC31.94■■■□□ 2.7
NPHP1O15259 MZT2A-201ENST00000309451 624 ntAPPRIS P1 TSL 1 (best) BASIC31.94■■■□□ 2.7
NPHP1O15259 GUK1-208ENST00000366728 842 ntTSL 2 BASIC31.94■■■□□ 2.7
NPHP1O15259 SPATA33-209ENST00000579310 1490 ntAPPRIS ALT2 TSL 2 BASIC31.94■■■□□ 2.7
NPHP1O15259 FCGRT-217ENST00000599988 660 ntTSL 5 BASIC31.93■■■□□ 2.7
NPHP1O15259 MIR1-1HG-202ENST00000624914 1220 ntTSL 1 (best) BASIC31.93■■■□□ 2.7
NPHP1O15259 MAFA-201ENST00000333480 2347 ntAPPRIS P1 BASIC31.92■■■□□ 2.7
NPHP1O15259 TMEM150A-202ENST00000334462 1518 ntAPPRIS P1 TSL 1 (best) BASIC31.92■■■□□ 2.7
NPHP1O15259 EFNA1-202ENST00000368407 1926 ntAPPRIS P1 TSL 1 (best) BASIC31.91■■■□□ 2.7
NPHP1O15259 IFI30-201ENST00000407280 1134 ntAPPRIS P1 TSL 1 (best) BASIC31.9■■■□□ 2.7
NPHP1O15259 FAM222B-205ENST00000577682 549 ntTSL 4 BASIC31.9■■■□□ 2.7
NPHP1O15259 KLF16-204ENST00000617223 1133 ntAPPRIS P1 TSL 1 (best) BASIC31.9■■■□□ 2.7
NPHP1O15259 GNAS-AS1_1.1-201ENST00000621898 103 ntBASIC31.9■■■□□ 2.7
NPHP1O15259 RPUSD1-208ENST00000567114 1835 ntTSL 2 BASIC31.9■■■□□ 2.7
NPHP1O15259 PRRX2-201ENST00000372469 1311 ntAPPRIS P1 TSL 1 (best) BASIC31.9■■■□□ 2.7
NPHP1O15259 UBP1-201ENST00000283628 2074 ntAPPRIS P3 TSL 2 BASIC31.89■■■□□ 2.7
NPHP1O15259 C19orf12-207ENST00000592153 1504 ntTSL 1 (best) BASIC31.89■■■□□ 2.7
NPHP1O15259 TUSC1-201ENST00000358022 2052 ntAPPRIS P1 BASIC31.88■■■□□ 2.69
NPHP1O15259 MOB2-207ENST00000614710 705 ntTSL 5 BASIC31.88■■■□□ 2.69
NPHP1O15259 CAPNS1-216ENST00000628306 1389 ntTSL 5 BASIC31.88■■■□□ 2.69
NPHP1O15259 SSBP3-202ENST00000357475 1533 ntTSL 1 (best) BASIC31.88■■■□□ 2.69
NPHP1O15259 HOXD8-201ENST00000313173 1917 ntAPPRIS P3 TSL 2 BASIC31.88■■■□□ 2.69
NPHP1O15259 EMX1-201ENST00000258106 2188 ntAPPRIS P1 TSL 1 (best) BASIC31.88■■■□□ 2.69
NPHP1O15259 SEPT3-203ENST00000396426 2586 ntAPPRIS P4 TSL 1 (best) BASIC31.88■■■□□ 2.69
NPHP1O15259 ZDHHC3-203ENST00000342790 1336 ntTSL 5 BASIC31.87■■■□□ 2.69
NPHP1O15259 RARRES2P1-201ENST00000474487 481 ntBASIC31.87■■■□□ 2.69
Retrieved 100 of 98,524 protein–RNA pairs in 16.8 ms