Protein–RNA interactions for Protein: Q9BT76

UPK3B, Uroplakin-3b, humanhuman

Predictions only

Length 320 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPK3BQ9BT76 HLA-A-209ENST00000638375 975 ntBASIC13.32□□□□□ -0.28
UPK3BQ9BT76 GLDC-219ENST00000640208 420 ntTSL 2 BASIC13.32□□□□□ -0.28
UPK3BQ9BT76 NKX2-1-203ENST00000518149 2583 ntAPPRIS P1 TSL 5 BASIC13.32□□□□□ -0.28
UPK3BQ9BT76 KDM5C-204ENST00000375401 6031 ntAPPRIS P3 TSL 1 (best) BASIC13.32□□□□□ -0.28
UPK3BQ9BT76 RTN1-202ENST00000342503 1703 ntAPPRIS ALT1 TSL 1 (best) BASIC13.32□□□□□ -0.28
UPK3BQ9BT76 UBE2QL1-201ENST00000399816 4317 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
UPK3BQ9BT76 NDOR1-201ENST00000344894 1794 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
UPK3BQ9BT76 SYNM-202ENST00000336292 7394 ntAPPRIS P4 TSL 1 (best) BASIC13.32□□□□□ -0.28
UPK3BQ9BT76 AL691432.2-201ENST00000607222 2038 ntBASIC13.32□□□□□ -0.28
UPK3BQ9BT76 NPR3-204ENST00000434067 2715 ntTSL 5 BASIC13.32□□□□□ -0.28
UPK3BQ9BT76 SPG7-202ENST00000341316 2288 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
UPK3BQ9BT76 DBNL-210ENST00000448521 1808 ntAPPRIS ALT1 TSL 1 (best) BASIC13.32□□□□□ -0.28
UPK3BQ9BT76 EDA-208ENST00000524573 1381 ntAPPRIS ALT1 TSL 1 (best) BASIC13.32□□□□□ -0.28
UPK3BQ9BT76 FBXO24-202ENST00000427939 2087 ntTSL 2 BASIC13.32□□□□□ -0.28
UPK3BQ9BT76 SMARCB1-204ENST00000407422 1643 ntAPPRIS ALT1 TSL 1 (best) BASIC13.31□□□□□ -0.28
UPK3BQ9BT76 LAYN-203ENST00000436913 2590 ntTSL 2 BASIC13.31□□□□□ -0.28
UPK3BQ9BT76 FBLN5-202ENST00000342058 2123 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
UPK3BQ9BT76 SCARF1-202ENST00000348987 2619 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
UPK3BQ9BT76 HNRNPLL-206ENST00000410076 1687 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
UPK3BQ9BT76 CYGB-201ENST00000293230 2158 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
UPK3BQ9BT76 OGG1-202ENST00000302008 2191 ntAPPRIS ALT2 TSL 5 BASIC13.31□□□□□ -0.28
UPK3BQ9BT76 SNAP91-211ENST00000520213 2168 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
UPK3BQ9BT76 SAE1-201ENST00000270225 2049 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
UPK3BQ9BT76 LRRC42-203ENST00000371370 2037 ntAPPRIS P1 TSL 2 BASIC13.31□□□□□ -0.28
UPK3BQ9BT76 ZNF326-202ENST00000361911 1538 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
UPK3BQ9BT76 CENPA-201ENST00000233505 1299 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
UPK3BQ9BT76 KRAS-201ENST00000256078 1119 ntAPPRIS P4 TSL 1 (best) BASIC13.31□□□□□ -0.28
UPK3BQ9BT76 DAB1-202ENST00000371230 1150 ntTSL 5 BASIC13.31□□□□□ -0.28
UPK3BQ9BT76 UBB-203ENST00000395839 1012 ntAPPRIS P1 TSL 2 BASIC13.31□□□□□ -0.28
UPK3BQ9BT76 ACP1-205ENST00000407983 703 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
UPK3BQ9BT76 HIGD1A-204ENST00000452906 585 ntTSL 2 BASIC13.31□□□□□ -0.28
UPK3BQ9BT76 LINC01184-202ENST00000501173 949 ntTSL 5 BASIC13.31□□□□□ -0.28
UPK3BQ9BT76 GLRB-205ENST00000512619 728 ntTSL 3 BASIC13.31□□□□□ -0.28
UPK3BQ9BT76 STAC3-202ENST00000546246 1014 ntTSL 2 BASIC13.31□□□□□ -0.28
UPK3BQ9BT76 AL590094.1-202ENST00000634619 1131 ntTSL 5 BASIC13.31□□□□□ -0.28
UPK3BQ9BT76 MAPK8IP1-201ENST00000241014 3050 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
UPK3BQ9BT76 SLC44A3-203ENST00000446120 2094 ntTSL 2 BASIC13.31□□□□□ -0.28
UPK3BQ9BT76 INTS11-209ENST00000450926 1839 ntTSL 5 BASIC13.31□□□□□ -0.28
UPK3BQ9BT76 MARK2-209ENST00000509502 2862 ntAPPRIS ALT2 TSL 2 BASIC13.31□□□□□ -0.28
UPK3BQ9BT76 PSMD8-201ENST00000215071 1553 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
UPK3BQ9BT76 WWOX-202ENST00000402655 1594 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
UPK3BQ9BT76 RBM14-RBM4-201ENST00000412278 1566 ntAPPRIS P1 TSL 2 BASIC13.31□□□□□ -0.28
UPK3BQ9BT76 NPIPA8-201ENST00000525596 1565 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
UPK3BQ9BT76 OSTM1-201ENST00000193322 4467 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
UPK3BQ9BT76 CHP2-201ENST00000300113 2382 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
UPK3BQ9BT76 NR6A1-202ENST00000373584 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC13.31□□□□□ -0.28
UPK3BQ9BT76 HS3ST4-201ENST00000331351 3203 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
UPK3BQ9BT76 BRD4-202ENST00000360016 3240 ntAPPRIS ALT2 TSL 1 (best) BASIC13.31□□□□□ -0.28
UPK3BQ9BT76 NLGN2-204ENST00000575301 4374 ntAPPRIS P1 TSL 5 BASIC13.31□□□□□ -0.28
UPK3BQ9BT76 ZBTB33-201ENST00000326624 5211 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
UPK3BQ9BT76 ADAD1-202ENST00000388724 1912 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
UPK3BQ9BT76 LRRC23-207ENST00000433346 1387 ntTSL 5 BASIC13.31□□□□□ -0.28
UPK3BQ9BT76 GRINA-201ENST00000313269 1968 ntAPPRIS P1 TSL 5 BASIC13.31□□□□□ -0.28
UPK3BQ9BT76 MAPK15-201ENST00000338033 1961 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
UPK3BQ9BT76 ZSWIM8-213ENST00000603114 5919 ntTSL 5 BASIC13.31□□□□□ -0.28
UPK3BQ9BT76 MTMR1-208ENST00000445323 4516 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
UPK3BQ9BT76 AC007192.1-201ENST00000593731 5142 ntAPPRIS P1 TSL 2 BASIC13.3□□□□□ -0.28
UPK3BQ9BT76 MOGS-201ENST00000233616 2895 ntAPPRIS P3 TSL 1 (best) BASIC13.3□□□□□ -0.28
UPK3BQ9BT76 DRD5-201ENST00000304374 2330 ntAPPRIS P1 BASIC13.3□□□□□ -0.28
UPK3BQ9BT76 BCS1L-201ENST00000359273 1454 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
UPK3BQ9BT76 CPLX3-201ENST00000395018 2082 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
UPK3BQ9BT76 DMWD-202ENST00000377735 3292 ntAPPRIS ALT2 TSL 5 BASIC13.3□□□□□ -0.28
UPK3BQ9BT76 SLC22A23-203ENST00000406686 5658 ntAPPRIS P2 TSL 5 BASIC13.3□□□□□ -0.28
UPK3BQ9BT76 PGP-201ENST00000333503 2727 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
UPK3BQ9BT76 CCDC151-201ENST00000356392 2107 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
UPK3BQ9BT76 TRA2A-201ENST00000297071 1845 ntAPPRIS P3 TSL 1 (best) BASIC13.3□□□□□ -0.28
UPK3BQ9BT76 SLC6A9-201ENST00000357730 2168 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
UPK3BQ9BT76 CRKL-201ENST00000354336 5325 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
UPK3BQ9BT76 JMJD4-202ENST00000438896 2502 ntTSL 2 BASIC13.3□□□□□ -0.28
UPK3BQ9BT76 PPM1H-201ENST00000228705 6353 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
UPK3BQ9BT76 MMP23A-201ENST00000234610 1017 ntBASIC13.3□□□□□ -0.28
UPK3BQ9BT76 C9orf129-201ENST00000375419 1154 ntAPPRIS P1 TSL 5 BASIC13.3□□□□□ -0.28
UPK3BQ9BT76 COL11A2-204ENST00000395194 1194 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
UPK3BQ9BT76 AC087499.1-201ENST00000418141 1075 ntBASIC13.3□□□□□ -0.28
UPK3BQ9BT76 B3GAT3P1-201ENST00000471720 806 ntBASIC13.3□□□□□ -0.28
UPK3BQ9BT76 CHAC1-203ENST00000487220 853 ntTSL 3 BASIC13.3□□□□□ -0.28
UPK3BQ9BT76 NEURL1B-202ENST00000520919 1089 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
UPK3BQ9BT76 ALKAL1-202ENST00000523939 536 ntAPPRIS ALT2 TSL 1 (best) BASIC13.3□□□□□ -0.28
UPK3BQ9BT76 GRAMD4P8-201ENST00000605465 1115 ntBASIC13.3□□□□□ -0.28
UPK3BQ9BT76 MIR6786-201ENST00000616843 113 ntBASIC13.3□□□□□ -0.28
UPK3BQ9BT76 ABBA01031674.1-201ENST00000635145 728 ntBASIC13.3□□□□□ -0.28
UPK3BQ9BT76 N4BP3-201ENST00000274605 6080 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
UPK3BQ9BT76 GLIPR2-203ENST00000396613 1917 ntTSL 4 BASIC13.3□□□□□ -0.28
UPK3BQ9BT76 AL138752.2-201ENST00000540557 2591 ntAPPRIS P1 TSL 5 BASIC13.3□□□□□ -0.28
UPK3BQ9BT76 STMN3-201ENST00000370053 2255 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
UPK3BQ9BT76 CCT4-204ENST00000544079 2261 ntTSL 2 BASIC13.3□□□□□ -0.28
UPK3BQ9BT76 WDR37-206ENST00000620998 1303 ntTSL 5 BASIC13.3□□□□□ -0.28
UPK3BQ9BT76 PCDH7-201ENST00000361762 6403 ntAPPRIS P3 TSL 1 (best) BASIC13.3□□□□□ -0.28
UPK3BQ9BT76 SPTBN4-212ENST00000598249 8070 ntAPPRIS P2 TSL 1 (best) BASIC13.3□□□□□ -0.28
UPK3BQ9BT76 PRKCD-202ENST00000394729 2810 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
UPK3BQ9BT76 SPHK2-211ENST00000600537 2136 ntAPPRIS ALT2 TSL 2 BASIC13.3□□□□□ -0.28
UPK3BQ9BT76 CPEB3-203ENST00000614585 5789 ntAPPRIS P3 TSL 5 BASIC13.3□□□□□ -0.28
UPK3BQ9BT76 COL18A1-204ENST00000400337 5436 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
UPK3BQ9BT76 SMIM3-201ENST00000526627 2332 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
UPK3BQ9BT76 TMEM109-202ENST00000536171 1959 ntAPPRIS P1 TSL 2 BASIC13.29□□□□□ -0.28
UPK3BQ9BT76 MGAT4B-201ENST00000292591 2446 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
UPK3BQ9BT76 RTBDN-207ENST00000589272 2076 ntTSL 2 BASIC13.29□□□□□ -0.28
UPK3BQ9BT76 NT5C1A-201ENST00000235628 1107 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
UPK3BQ9BT76 SYNE4-202ENST00000340477 1004 ntAPPRIS ALT2 TSL 1 (best) BASIC13.29□□□□□ -0.28
UPK3BQ9BT76 GLI4-202ENST00000344692 1012 ntTSL 2 BASIC13.29□□□□□ -0.28
Retrieved 100 of 98,524 protein–RNA pairs in 25.5 ms