Protein–RNA interactions for Protein: Q96BD8

SKA1, Spindle and kinetochore-associated protein 1, humanhuman

Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1Q96BD8 KSR1P1-201ENST00000446298 240 ntBASIC19.67■□□□□ 0.74
SKA1Q96BD8 MLF2-210ENST00000542154 838 ntAPPRIS P1 TSL 5 BASIC19.67■□□□□ 0.74
SKA1Q96BD8 AC009093.4-201ENST00000567984 561 ntTSL 4 BASIC19.67■□□□□ 0.74
SKA1Q96BD8 PDCD5-207ENST00000590247 699 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
SKA1Q96BD8 AL590094.1-202ENST00000634619 1131 ntTSL 5 BASIC19.67■□□□□ 0.74
SKA1Q96BD8 RREB1-201ENST00000334984 5789 ntAPPRIS ALT2 TSL 1 (best) BASIC19.67■□□□□ 0.74
SKA1Q96BD8 PGR-201ENST00000263463 2496 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
SKA1Q96BD8 SOCS2-210ENST00000551556 1716 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
SKA1Q96BD8 PSMB11-201ENST00000408907 2110 ntAPPRIS P1 BASIC19.67■□□□□ 0.74
SKA1Q96BD8 KIF22-203ENST00000561482 2505 ntTSL 2 BASIC19.67■□□□□ 0.74
SKA1Q96BD8 PLPPR2-208ENST00000591608 2552 ntAPPRIS ALT2 TSL 2 BASIC19.67■□□□□ 0.74
SKA1Q96BD8 ADORA2A-215ENST00000618076 2630 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
SKA1Q96BD8 SNX8-201ENST00000222990 4727 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
SKA1Q96BD8 LAMP1-201ENST00000332556 2699 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
SKA1Q96BD8 HACE1-202ENST00000369125 3102 ntTSL 2 BASIC19.67■□□□□ 0.74
SKA1Q96BD8 IL4I1-201ENST00000341114 2349 ntAPPRIS P4 TSL 1 (best) BASIC19.67■□□□□ 0.74
SKA1Q96BD8 PRR14-203ENST00000542965 2316 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
SKA1Q96BD8 NEURL4-203ENST00000570460 4890 ntAPPRIS ALT2 TSL 5 BASIC19.67■□□□□ 0.74
SKA1Q96BD8 ENTPD6-202ENST00000360031 2766 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
SKA1Q96BD8 LSM4-203ENST00000593829 1908 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
SKA1Q96BD8 SLC5A10-205ENST00000417251 1984 ntTSL 2 BASIC19.66■□□□□ 0.74
SKA1Q96BD8 CBX1-202ENST00000393408 2422 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
SKA1Q96BD8 CMTM7-201ENST00000334983 2038 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
SKA1Q96BD8 RSAD1-201ENST00000258955 2528 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
SKA1Q96BD8 CTSH-201ENST00000220166 2190 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
SKA1Q96BD8 PLEKHM2-202ENST00000375799 4122 ntAPPRIS P2 TSL 1 (best) BASIC19.66■□□□□ 0.74
SKA1Q96BD8 LINC00511-201ENST00000453722 1716 ntTSL 2 BASIC19.66■□□□□ 0.74
SKA1Q96BD8 CPNE9-205ENST00000613455 1742 ntTSL 5 BASIC19.66■□□□□ 0.74
SKA1Q96BD8 KRT6C-201ENST00000252250 2289 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
SKA1Q96BD8 KRT6B-201ENST00000252252 2282 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
SKA1Q96BD8 SULT1A1-202ENST00000350842 1282 ntTSL 3 BASIC19.66■□□□□ 0.74
SKA1Q96BD8 FUOM-203ENST00000368552 762 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
SKA1Q96BD8 ELAVL3-202ENST00000438662 1223 ntAPPRIS ALT1 TSL 5 BASIC19.66■□□□□ 0.74
SKA1Q96BD8 CHCHD10-202ENST00000484558 1171 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
SKA1Q96BD8 ATP6V0E1-204ENST00000519911 718 ntTSL 2 BASIC19.66■□□□□ 0.74
SKA1Q96BD8 RNASEK-202ENST00000548577 810 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
SKA1Q96BD8 AC126696.3-202ENST00000570159 553 ntTSL 5 BASIC19.66■□□□□ 0.74
SKA1Q96BD8 CXXC4-201ENST00000394767 5565 ntAPPRIS P1 TSL 5 BASIC19.66■□□□□ 0.74
SKA1Q96BD8 AC026471.1-201ENST00000564629 3026 ntBASIC19.66■□□□□ 0.74
SKA1Q96BD8 KIF1BP-201ENST00000361983 2544 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
SKA1Q96BD8 WISP2-201ENST00000190983 1403 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
SKA1Q96BD8 LRRC27-203ENST00000368613 2113 ntAPPRIS P3 TSL 1 (best) BASIC19.66■□□□□ 0.74
SKA1Q96BD8 ROR1-201ENST00000371079 5832 ntAPPRIS P2 TSL 1 (best) BASIC19.66■□□□□ 0.74
SKA1Q96BD8 LRWD1-201ENST00000292616 2215 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
SKA1Q96BD8 MFSD10-206ENST00000508221 1639 ntTSL 5 BASIC19.65■□□□□ 0.74
SKA1Q96BD8 OSR2-202ENST00000435298 1736 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
SKA1Q96BD8 ADGRD2-201ENST00000334810 3244 ntAPPRIS P1 TSL 5 BASIC19.65■□□□□ 0.74
SKA1Q96BD8 RNF146-201ENST00000309649 2624 ntAPPRIS P3 TSL 4 BASIC19.65■□□□□ 0.74
SKA1Q96BD8 KRAS-201ENST00000256078 1119 ntAPPRIS P4 TSL 1 (best) BASIC19.65■□□□□ 0.74
SKA1Q96BD8 TMCO3-201ENST00000375391 2132 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
SKA1Q96BD8 FAM181A-203ENST00000556222 1162 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
SKA1Q96BD8 AC016582.3-201ENST00000589653 561 ntTSL 4 BASIC19.65■□□□□ 0.74
SKA1Q96BD8 MTFP1-206ENST00000629597 482 ntTSL 5 BASIC19.65■□□□□ 0.74
SKA1Q96BD8 CROCCP2-205ENST00000639481 1296 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
SKA1Q96BD8 GLDC-219ENST00000640208 420 ntTSL 2 BASIC19.65■□□□□ 0.74
SKA1Q96BD8 AL691447.2-201ENST00000454869 2162 ntTSL 2 BASIC19.65■□□□□ 0.74
SKA1Q96BD8 CYTH1-209ENST00000589296 2159 ntTSL 5 BASIC19.65■□□□□ 0.74
SKA1Q96BD8 MSANTD2-202ENST00000374979 2349 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
SKA1Q96BD8 KRT8P17-201ENST00000453110 1448 ntBASIC19.65■□□□□ 0.74
SKA1Q96BD8 NTMT1-210ENST00000613644 1501 ntAPPRIS P1 TSL 3 BASIC19.65■□□□□ 0.74
SKA1Q96BD8 SLC1A6-202ENST00000430939 1794 ntTSL 2 BASIC19.65■□□□□ 0.74
SKA1Q96BD8 LETM1P2-201ENST00000597330 2178 ntBASIC19.64■□□□□ 0.74
SKA1Q96BD8 PCDHA4-201ENST00000378125 2328 ntTSL 5 BASIC19.64■□□□□ 0.74
SKA1Q96BD8 UMOD-201ENST00000302509 2477 ntAPPRIS P3 TSL 5 BASIC19.64■□□□□ 0.74
SKA1Q96BD8 MGAT5B-201ENST00000301618 4486 ntAPPRIS P3 TSL 5 BASIC19.64■□□□□ 0.73
SKA1Q96BD8 PGP-201ENST00000333503 2727 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
SKA1Q96BD8 MIB2-231ENST00000518681 3116 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
SKA1Q96BD8 NDUFB10-201ENST00000268668 705 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
SKA1Q96BD8 HCRT-201ENST00000293330 577 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
SKA1Q96BD8 VMO1-201ENST00000328739 766 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
SKA1Q96BD8 AC093752.1-201ENST00000511950 605 ntTSL 4 BASIC19.64■□□□□ 0.73
SKA1Q96BD8 AC016065.1-203ENST00000523225 1017 ntTSL 3 BASIC19.64■□□□□ 0.73
SKA1Q96BD8 SMN1-211ENST00000625245 885 ntAPPRIS ALT2 TSL 5 BASIC19.64■□□□□ 0.73
SKA1Q96BD8 SMN2-215ENST00000628696 885 ntAPPRIS ALT2 TSL 5 BASIC19.64■□□□□ 0.73
SKA1Q96BD8 GSTM4-201ENST00000326729 1321 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
SKA1Q96BD8 RNASEH2C-203ENST00000528220 1337 ntTSL 2 BASIC19.64■□□□□ 0.73
SKA1Q96BD8 KRT18-202ENST00000388837 1420 ntAPPRIS P1 TSL 5 BASIC19.64■□□□□ 0.73
SKA1Q96BD8 BACE1-209ENST00000513780 1465 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
SKA1Q96BD8 HOXC4-201ENST00000303406 1524 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
SKA1Q96BD8 DPP3P2-201ENST00000416030 1696 ntBASIC19.64■□□□□ 0.73
SKA1Q96BD8 TINAGL1-211ENST00000537531 1841 ntAPPRIS ALT2 TSL 5 BASIC19.64■□□□□ 0.73
SKA1Q96BD8 PRKCSH-209ENST00000589838 1898 ntAPPRIS P3 TSL 1 (best) BASIC19.64■□□□□ 0.73
SKA1Q96BD8 AC011511.1-201ENST00000452032 1956 ntAPPRIS P1 TSL 2 BASIC19.64■□□□□ 0.73
SKA1Q96BD8 LSR-214ENST00000621372 2274 ntAPPRIS P4 TSL 1 (best) BASIC19.64■□□□□ 0.73
SKA1Q96BD8 ECE1-205ENST00000436918 2328 ntTSL 2 BASIC19.64■□□□□ 0.73
SKA1Q96BD8 ZDHHC3-205ENST00000424952 2687 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
SKA1Q96BD8 MEN1-209ENST00000394376 3034 ntAPPRIS P3 TSL 5 BASIC19.64■□□□□ 0.73
SKA1Q96BD8 ROCK2-202ENST00000315872 8292 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
SKA1Q96BD8 CNIH3-201ENST00000272133 2558 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
SKA1Q96BD8 ABCB9-202ENST00000344275 2394 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
SKA1Q96BD8 GJB3-202ENST00000373366 2217 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
SKA1Q96BD8 WDR25-201ENST00000335290 2123 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
SKA1Q96BD8 SAXO1-202ENST00000380534 2099 ntAPPRIS P3 TSL 1 (best) BASIC19.63■□□□□ 0.73
SKA1Q96BD8 SOX4-201ENST00000244745 5852 ntAPPRIS P1 BASIC19.63■□□□□ 0.73
SKA1Q96BD8 RALGPS1-204ENST00000373436 1667 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
SKA1Q96BD8 DNAL4-201ENST00000216068 1504 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
SKA1Q96BD8 BTBD1-202ENST00000379403 1467 ntTSL 5 BASIC19.63■□□□□ 0.73
SKA1Q96BD8 TMEM243-201ENST00000257637 1063 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
SKA1Q96BD8 NIFKP9-201ENST00000419265 221 ntBASIC19.63■□□□□ 0.73
SKA1Q96BD8 Z98884.1-201ENST00000451646 830 ntTSL 3 BASIC19.63■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 21 ms