Protein–RNA interactions for Protein: Q8N3C7

CLIP4, CAP-Gly domain-containing linker protein 4, humanhuman

Predictions only

Length 705 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP4Q8N3C7 AIDA-202ENST00000355727 1072 ntTSL 5 BASIC17.95■□□□□ 0.46
CLIP4Q8N3C7 AC004889.1-203ENST00000464929 819 ntTSL 5 BASIC17.95■□□□□ 0.46
CLIP4Q8N3C7 OR2A1-AS1-207ENST00000486094 819 ntBASIC17.95■□□□□ 0.46
CLIP4Q8N3C7 AC008667.2-201ENST00000504413 469 ntTSL 3 BASIC17.95■□□□□ 0.46
CLIP4Q8N3C7 AL929601.1-201ENST00000551565 573 ntTSL 4 BASIC17.95■□□□□ 0.46
CLIP4Q8N3C7 AC142086.2-201ENST00000569753 217 ntBASIC17.95■□□□□ 0.46
CLIP4Q8N3C7 AC120498.8-201ENST00000614275 531 ntBASIC17.95■□□□□ 0.46
CLIP4Q8N3C7 CYP2E1-205ENST00000463117 1912 ntAPPRIS P1 TSL 5 BASIC17.95■□□□□ 0.46
CLIP4Q8N3C7 CHMP6-201ENST00000325167 1664 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
CLIP4Q8N3C7 IRF7-203ENST00000397566 2051 ntAPPRIS P4 TSL 1 (best) BASIC17.95■□□□□ 0.46
CLIP4Q8N3C7 CDK5R1-201ENST00000313401 4325 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
CLIP4Q8N3C7 SLC25A15-201ENST00000338625 1586 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
CLIP4Q8N3C7 P3H4-202ENST00000393928 2601 ntAPPRIS P2 TSL 1 (best) BASIC17.95■□□□□ 0.46
CLIP4Q8N3C7 HCG11-201ENST00000411553 5696 ntBASIC17.95■□□□□ 0.46
CLIP4Q8N3C7 ZDHHC2-201ENST00000262096 6377 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
CLIP4Q8N3C7 BEGAIN-211ENST00000637646 2911 ntTSL 5 BASIC17.95■□□□□ 0.46
CLIP4Q8N3C7 PCCA-201ENST00000376279 2418 ntTSL 2 BASIC17.94■□□□□ 0.46
CLIP4Q8N3C7 SEMA6D-205ENST00000389425 2318 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
CLIP4Q8N3C7 PITX3-201ENST00000370002 1391 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
CLIP4Q8N3C7 MB21D1-202ENST00000370318 1917 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
CLIP4Q8N3C7 NECAB3-202ENST00000375238 1942 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
CLIP4Q8N3C7 TRMU-202ENST00000381019 1381 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
CLIP4Q8N3C7 TWF1-201ENST00000395510 3045 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
CLIP4Q8N3C7 ACYP2-203ENST00000406041 1913 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
CLIP4Q8N3C7 ELAC2-202ENST00000395962 2924 ntTSL 2 BASIC17.94■□□□□ 0.46
CLIP4Q8N3C7 TIMP4-201ENST00000287814 1650 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
CLIP4Q8N3C7 MELTF-202ENST00000296351 1650 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
CLIP4Q8N3C7 CFC1-201ENST00000259216 1046 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
CLIP4Q8N3C7 CFC1B-201ENST00000281882 1071 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
CLIP4Q8N3C7 LIPT2-201ENST00000310109 1018 ntAPPRIS P1 TSL 2 BASIC17.94■□□□□ 0.46
CLIP4Q8N3C7 CABP2-202ENST00000353903 789 ntAPPRIS P1 TSL 5 BASIC17.94■□□□□ 0.46
CLIP4Q8N3C7 TXNL4A-203ENST00000585474 1185 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
CLIP4Q8N3C7 DCAKD-205ENST00000588499 990 ntAPPRIS P1 TSL 2 BASIC17.94■□□□□ 0.46
CLIP4Q8N3C7 RFC2-202ENST00000352131 1576 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
CLIP4Q8N3C7 TH-203ENST00000352909 1889 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
CLIP4Q8N3C7 TH-205ENST00000381175 1898 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
CLIP4Q8N3C7 SPHK1-207ENST00000590959 1851 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.46
CLIP4Q8N3C7 CDK11B-208ENST00000629289 2490 ntTSL 5 BASIC17.94■□□□□ 0.46
CLIP4Q8N3C7 CDK11B-209ENST00000629312 2496 ntTSL 5 BASIC17.94■□□□□ 0.46
CLIP4Q8N3C7 MEN1-201ENST00000312049 2761 ntAPPRIS ALT1 TSL 1 (best) BASIC17.94■□□□□ 0.46
CLIP4Q8N3C7 SARDH-201ENST00000298628 1484 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
CLIP4Q8N3C7 CASTOR1-202ENST00000407689 1623 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
CLIP4Q8N3C7 FAM217A-208ENST00000639338 1929 ntTSL 5 BASIC17.94■□□□□ 0.46
CLIP4Q8N3C7 ADAMTS9-202ENST00000459780 2871 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
CLIP4Q8N3C7 VMAC-201ENST00000339485 2254 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
CLIP4Q8N3C7 ITGB7-209ENST00000550743 2138 ntTSL 5 BASIC17.93■□□□□ 0.46
CLIP4Q8N3C7 ST3GAL4-205ENST00000449406 1669 ntTSL 5 BASIC17.93■□□□□ 0.46
CLIP4Q8N3C7 GOLGA6L3-201ENST00000507199 1679 ntBASIC17.93■□□□□ 0.46
CLIP4Q8N3C7 CACNA1A-227ENST00000636549 6792 ntAPPRIS ALT2 TSL 5 BASIC17.93■□□□□ 0.46
CLIP4Q8N3C7 PCSK7-201ENST00000320934 4649 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
CLIP4Q8N3C7 ZNF623-203ENST00000526926 2612 ntAPPRIS ALT2 TSL 2 BASIC17.93■□□□□ 0.46
CLIP4Q8N3C7 PLEKHG5-201ENST00000340850 4715 ntAPPRIS P3 TSL 5 BASIC17.93■□□□□ 0.46
CLIP4Q8N3C7 SEPT6-202ENST00000354228 1576 ntAPPRIS P4 TSL 1 (best) BASIC17.93■□□□□ 0.46
CLIP4Q8N3C7 AC008060.1-201ENST00000401499 1551 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
CLIP4Q8N3C7 SGCE-207ENST00000447873 1597 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
CLIP4Q8N3C7 PLEKHG5-211ENST00000535355 4725 ntAPPRIS ALT2 TSL 2 BASIC17.93■□□□□ 0.46
CLIP4Q8N3C7 CAVIN3-201ENST00000303927 1174 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
CLIP4Q8N3C7 RAMP1-202ENST00000403885 650 ntTSL 3 BASIC17.93■□□□□ 0.46
CLIP4Q8N3C7 NCBP2-207ENST00000452404 1133 ntTSL 2 BASIC17.93■□□□□ 0.46
CLIP4Q8N3C7 TP53I11-215ENST00000531928 1078 ntTSL 3 BASIC17.93■□□□□ 0.46
CLIP4Q8N3C7 SOX15-202ENST00000538513 1050 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
CLIP4Q8N3C7 SOX15-203ENST00000570788 1093 ntBASIC17.93■□□□□ 0.46
CLIP4Q8N3C7 LIMD2-206ENST00000578993 602 ntTSL 3 BASIC17.93■□□□□ 0.46
CLIP4Q8N3C7 AL160396.2-202ENST00000636692 566 ntAPPRIS ALT2 TSL 5 BASIC17.93■□□□□ 0.46
CLIP4Q8N3C7 ISOC1-201ENST00000173527 1940 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
CLIP4Q8N3C7 HEMK1-206ENST00000455834 1499 ntAPPRIS P1 TSL 5 BASIC17.93■□□□□ 0.46
CLIP4Q8N3C7 BBS5-202ENST00000392663 3107 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
CLIP4Q8N3C7 MLF2-201ENST00000203630 1969 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
CLIP4Q8N3C7 MAFF-206ENST00000538320 2458 ntAPPRIS P1 TSL 4 BASIC17.93■□□□□ 0.46
CLIP4Q8N3C7 SLC1A7-201ENST00000371491 1306 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
CLIP4Q8N3C7 KATNAL2-208ENST00000592005 1348 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
CLIP4Q8N3C7 ZNF302-206ENST00000505242 2849 ntAPPRIS P3 TSL 1 (best) BASIC17.93■□□□□ 0.46
CLIP4Q8N3C7 CYTH1-209ENST00000589296 2159 ntTSL 5 BASIC17.93■□□□□ 0.46
CLIP4Q8N3C7 PNCK-201ENST00000340888 1508 ntAPPRIS P1 TSL 5 BASIC17.93■□□□□ 0.46
CLIP4Q8N3C7 KIAA1549-201ENST00000422774 6283 ntAPPRIS ALT2 TSL 1 (best) BASIC17.93■□□□□ 0.46
CLIP4Q8N3C7 TACSTD2-201ENST00000371225 2351 ntAPPRIS P1 BASIC17.93■□□□□ 0.46
CLIP4Q8N3C7 PCID2-202ENST00000337344 1898 ntAPPRIS P1 TSL 2 BASIC17.92■□□□□ 0.46
CLIP4Q8N3C7 LRWD1-201ENST00000292616 2215 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
CLIP4Q8N3C7 SLC37A2-203ENST00000403796 2910 ntAPPRIS ALT1 TSL 2 BASIC17.92■□□□□ 0.46
CLIP4Q8N3C7 NDUFV3-202ENST00000354250 1575 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
CLIP4Q8N3C7 UBE2Q2-204ENST00000561851 1582 ntTSL 2 BASIC17.92■□□□□ 0.46
CLIP4Q8N3C7 ULK3-220ENST00000569437 2611 ntAPPRIS ALT1 TSL 1 (best) BASIC17.92■□□□□ 0.46
CLIP4Q8N3C7 AC004982.2-201ENST00000609497 1578 ntTSL 2 BASIC17.92■□□□□ 0.46
CLIP4Q8N3C7 RAPGEF5-203ENST00000405243 2800 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
CLIP4Q8N3C7 TMEM206-201ENST00000261455 2475 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
CLIP4Q8N3C7 AC008878.3-201ENST00000617428 4964 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
CLIP4Q8N3C7 PSMD6-201ENST00000295901 1430 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
CLIP4Q8N3C7 HLA-G-201ENST00000360323 1427 ntAPPRIS P2 BASIC17.92■□□□□ 0.46
CLIP4Q8N3C7 DDX42-202ENST00000389924 3939 ntAPPRIS P1 TSL 5 BASIC17.92■□□□□ 0.46
CLIP4Q8N3C7 AVPR1A-201ENST00000299178 5963 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
CLIP4Q8N3C7 NOXO1-203ENST00000397280 1147 ntAPPRIS ALT2 TSL 1 (best) BASIC17.92■□□□□ 0.46
CLIP4Q8N3C7 OTUB1-203ENST00000428192 1296 ntAPPRIS P2 TSL 2 BASIC17.92■□□□□ 0.46
CLIP4Q8N3C7 ABHD17AP6-201ENST00000458502 1044 ntBASIC17.92■□□□□ 0.46
CLIP4Q8N3C7 UNC93B6-201ENST00000525262 1143 ntTSL 5 BASIC17.92■□□□□ 0.46
CLIP4Q8N3C7 TMEM218-207ENST00000528724 1117 ntTSL 5 BASIC17.92■□□□□ 0.46
CLIP4Q8N3C7 TMEM218-214ENST00000532156 954 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
CLIP4Q8N3C7 AC022509.3-202ENST00000545819 566 ntTSL 3 BASIC17.92■□□□□ 0.46
CLIP4Q8N3C7 AC011611.3-201ENST00000552367 569 ntTSL 4 BASIC17.92■□□□□ 0.46
CLIP4Q8N3C7 PNN-205ENST00000556530 601 ntTSL 2 BASIC17.92■□□□□ 0.46
CLIP4Q8N3C7 GNB5-211ENST00000560116 918 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
Retrieved 100 of 98,524 protein–RNA pairs in 31.1 ms