Protein–RNA interactions for Protein: Q71RC2

LARP4, La-related protein 4, humanhuman

Known RBP eCLIP

Length 724 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LARP4Q71RC2 HDGF-210ENST00000537739 2073 ntAPPRIS P1 TSL 1 (best) BASIC25.62■■□□□ 1.695e-9■■□□□ 13.7
LARP4Q71RC2 HDGF-201ENST00000357325 2380 ntAPPRIS P1 TSL 1 (best) BASIC24.96■■□□□ 1.595e-9■■□□□ 13.7
LARP4Q71RC2 HDGF-203ENST00000368209 2171 ntTSL 2 BASIC13.07□□□□□ -0.325e-9■■□□□ 13.7
LARP4Q71RC2 VARS2-209ENST00000477288 6054 ntTSL 217.69■□□□□ 0.429e-7■■□□□ 13.7
LARP4Q71RC2 VARS2-206ENST00000473916 2000 ntTSL 217.68■□□□□ 0.429e-7■■□□□ 13.7
LARP4Q71RC2 VARS2-207ENST00000476162 2228 ntTSL 1 (best)15.89■□□□□ 0.139e-7■■□□□ 13.7
LARP4Q71RC2 VARS2-212ENST00000542001 4064 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.119e-7■■□□□ 13.7
LARP4Q71RC2 VARS2-211ENST00000541562 3566 ntTSL 2 BASIC14.91□□□□□ -0.029e-7■■□□□ 13.7
LARP4Q71RC2 VARS2-201ENST00000321897 4073 ntTSL 1 (best) BASIC14.78□□□□□ -0.049e-7■■□□□ 13.7
LARP4Q71RC2 VARS2-205ENST00000469358 3429 ntTSL 512.11□□□□□ -0.479e-7■■□□□ 13.7
LARP4Q71RC2 VARS2-213ENST00000625423 3362 ntTSL 2 BASIC11.29□□□□□ -0.69e-7■■□□□ 13.7
LARP4Q71RC2 MRPS2-202ENST00000371785 1640 ntAPPRIS P1 TSL 3 BASIC21.04■□□□□ 0.962e-6■■□□□ 13.7
LARP4Q71RC2 MRPS2-201ENST00000241600 1510 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.482e-6■■□□□ 13.7
LARP4Q71RC2 NUP210-201ENST00000254508 7193 ntAPPRIS P1 TSL 2 BASIC13.61□□□□□ -0.234e-7■■□□□ 13.6
LARP4Q71RC2 SNF8-203ENST00000504000 1899 ntTSL 215.08■□□□□ 0.014e-7■■□□□ 13.6
LARP4Q71RC2 SNF8-212ENST00000514089 571 ntTSL 513.49□□□□□ -0.254e-7■■□□□ 13.6
LARP4Q71RC2 SNF8-206ENST00000509989 677 ntTSL 312.43□□□□□ -0.424e-7■■□□□ 13.6
LARP4Q71RC2 SNF8-215ENST00000515572 687 ntTSL 211.12□□□□□ -0.634e-7■■□□□ 13.6
LARP4Q71RC2 AC104809.2-201ENST00000418218 2274 ntTSL 1 (best) BASIC17.57■□□□□ 0.42e-6■■□□□ 13.6
LARP4Q71RC2 HINT2-201ENST00000259667 628 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.416e-6■■□□□ 13.6
LARP4Q71RC2 HINT2-206ENST00000474908 2167 ntTSL 1 (best)23.82■■□□□ 1.46e-6■■□□□ 13.6
LARP4Q71RC2 HINT2-204ENST00000472085 569 ntTSL 323.01■■□□□ 1.276e-6■■□□□ 13.6
LARP4Q71RC2 HINT2-202ENST00000461169 734 ntTSL 220.89■□□□□ 0.936e-6■■□□□ 13.6
LARP4Q71RC2 HINT2-205ENST00000474848 853 ntTSL 215.89■□□□□ 0.136e-6■■□□□ 13.6
LARP4Q71RC2 HINT2-207ENST00000490578 717 ntTSL 212.75□□□□□ -0.376e-6■■□□□ 13.6
LARP4Q71RC2 YIPF3-214ENST00000510102 1639 ntTSL 516.38■□□□□ 0.212e-6■■□□□ 13.6
LARP4Q71RC2 YIPF3-202ENST00000372422 1576 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.112e-6■■□□□ 13.6
LARP4Q71RC2 YIPF3-213ENST00000506469 1444 ntTSL 5 BASIC13.64□□□□□ -0.232e-6■■□□□ 13.6
LARP4Q71RC2 GADD45GIP1-201ENST00000316939 1782 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.032e-6■■□□□ 13.6
LARP4Q71RC2 BAX-211ENST00000513545 775 ntTSL 319.87■□□□□ 0.771e-7■■□□□ 13.6
LARP4Q71RC2 LUC7L-207ENST00000426094 2737 ntTSL 1 (best)19.75■□□□□ 0.756e-8■■□□□ 13.6
LARP4Q71RC2 LUC7L-221ENST00000629543 1520 ntTSL 5 BASIC17.72■□□□□ 0.436e-8■■□□□ 13.6
LARP4Q71RC2 LUC7L-201ENST00000293872 1456 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.396e-8■■□□□ 13.6
LARP4Q71RC2 LUC7L-202ENST00000337351 2097 ntTSL 1 (best) BASIC17.47■□□□□ 0.396e-8■■□□□ 13.6
LARP4Q71RC2 LUC7L-204ENST00000397783 1504 ntTSL 2 BASIC17.31■□□□□ 0.366e-8■■□□□ 13.6
LARP4Q71RC2 LUC7L-209ENST00000429378 721 ntTSL 315.84■□□□□ 0.136e-8■■□□□ 13.6
LARP4Q71RC2 LUC7L-213ENST00000464711 2134 ntTSL 215.54■□□□□ 0.086e-8■■□□□ 13.6
LARP4Q71RC2 LUC7L-217ENST00000490762 2643 ntTSL 1 (best)13.89□□□□□ -0.196e-8■■□□□ 13.6
LARP4Q71RC2 LUC7L-220ENST00000495349 1006 ntTSL 213.11□□□□□ -0.316e-8■■□□□ 13.6
LARP4Q71RC2 LUC7L-206ENST00000419516 1211 ntTSL 513.11□□□□□ -0.316e-8■■□□□ 13.6
LARP4Q71RC2 LUC7L-203ENST00000397780 1335 ntTSL 5 BASIC11.6□□□□□ -0.556e-8■■□□□ 13.6
LARP4Q71RC2 LUC7L-205ENST00000418978 989 ntTSL 511.59□□□□□ -0.556e-8■■□□□ 13.6
LARP4Q71RC2 LUC7L-210ENST00000430864 695 ntTSL 511.38□□□□□ -0.596e-8■■□□□ 13.6
LARP4Q71RC2 MSH6-202ENST00000411819 548 ntTSL 420.32■□□□□ 0.842e-11■■□□□ 13.6
LARP4Q71RC2 MSH6-206ENST00000455383 578 ntTSL 516.84■□□□□ 0.292e-11■■□□□ 13.6
LARP4Q71RC2 KDM5C-204ENST00000375401 6031 ntAPPRIS P3 TSL 1 (best) BASIC15.87■□□□□ 0.132e-11■■□□□ 13.6
LARP4Q71RC2 KDM5C-205ENST00000404049 5677 ntAPPRIS ALT2 TSL 1 (best) BASIC14.4□□□□□ -0.12e-11■■□□□ 13.6
LARP4Q71RC2 KDM5C-208ENST00000452825 6096 ntAPPRIS ALT2 TSL 5 BASIC12.85□□□□□ -0.352e-11■■□□□ 13.6
LARP4Q71RC2 SPEN-201ENST00000375759 12232 ntAPPRIS P1 TSL 1 (best) BASIC9.26□□□□□ -0.932e-6■■□□□ 13.6
LARP4Q71RC2 HYPK-205ENST00000498605 933 ntTSL 217.6■□□□□ 0.413e-7■■□□□ 13.6
LARP4Q71RC2 PIH1D1-216ENST00000598889 615 ntTSL 517.21■□□□□ 0.353e-7■■□□□ 13.6
LARP4Q71RC2 PIH1D1-210ENST00000596651 741 ntTSL 315.77■□□□□ 0.123e-7■■□□□ 13.6
LARP4Q71RC2 PIH1D1-214ENST00000597577 698 ntTSL 515.77■□□□□ 0.123e-7■■□□□ 13.6
LARP4Q71RC2 PIH1D1-201ENST00000262265 1192 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.123e-7■■□□□ 13.6
LARP4Q71RC2 PIH1D1-224ENST00000602226 341 ntTSL 315.77■□□□□ 0.123e-7■■□□□ 13.6
LARP4Q71RC2 PIH1D1-223ENST00000602076 474 ntTSL 215.77■□□□□ 0.123e-7■■□□□ 13.6
LARP4Q71RC2 PIH1D1-204ENST00000594845 489 ntTSL 515.77■□□□□ 0.123e-7■■□□□ 13.6
LARP4Q71RC2 PIH1D1-202ENST00000593629 1084 ntTSL 315.77■□□□□ 0.123e-7■■□□□ 13.6
LARP4Q71RC2 PIH1D1-215ENST00000598175 418 ntTSL 514.33□□□□□ -0.123e-7■■□□□ 13.6
LARP4Q71RC2 PIH1D1-212ENST00000596916 793 ntTSL 514.33□□□□□ -0.123e-7■■□□□ 13.6
LARP4Q71RC2 PIH1D1-209ENST00000596049 992 ntAPPRIS P1 TSL 5 BASIC13.81□□□□□ -0.23e-7■■□□□ 13.6
LARP4Q71RC2 PIH1D1-208ENST00000595633 424 ntTSL 213.65□□□□□ -0.223e-7■■□□□ 13.6
LARP4Q71RC2 PIH1D1-219ENST00000600875 633 ntTSL 512.16□□□□□ -0.463e-7■■□□□ 13.6
LARP4Q71RC2 MGAT1-203ENST00000393340 3077 ntAPPRIS P1 TSL 2 BASIC16.83■□□□□ 0.291e-6■■□□□ 13.6
LARP4Q71RC2 MGAT1-201ENST00000307826 2761 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.171e-6■■□□□ 13.6
LARP4Q71RC2 MGAT1-202ENST00000333055 8863 ntAPPRIS P1 TSL 2 BASIC14.17□□□□□ -0.141e-6■■□□□ 13.6
LARP4Q71RC2 MGAT1-205ENST00000446023 3175 ntAPPRIS P1 TSL 2 BASIC13.44□□□□□ -0.261e-6■■□□□ 13.6
LARP4Q71RC2 CHST14-202ENST00000559991 1968 ntTSL 5 BASIC25.18■■□□□ 1.624e-12■■□□□ 13.6
LARP4Q71RC2 SLC38A10-210ENST00000573058 1627 nt24.56■■□□□ 1.521e-6■■□□□ 13.6
LARP4Q71RC2 MYBL2-201ENST00000217026 2639 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.11e-6■■□□□ 13.6
LARP4Q71RC2 IRF3-227ENST00000600911 1637 ntTSL 5 BASIC21.89■■□□□ 1.091e-6■■□□□ 13.6
LARP4Q71RC2 IRF3-201ENST00000309877 1691 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.091e-6■■□□□ 13.6
LARP4Q71RC2 IRF3-228ENST00000601291 1556 ntTSL 1 (best) BASIC21.75■■□□□ 1.071e-6■■□□□ 13.6
LARP4Q71RC2 EIF2B4-211ENST00000616081 1754 ntTSL 5 BASIC21.14■□□□□ 0.971e-6■■□□□ 13.6
LARP4Q71RC2 IRF3-207ENST00000593922 1494 ntTSL 1 (best) BASIC21.13■□□□□ 0.971e-6■■□□□ 13.6
LARP4Q71RC2 DBNDD1-201ENST00000002501 2079 ntAPPRIS P1 TSL 2 BASIC20.1■□□□□ 0.811e-6■■□□□ 13.6
LARP4Q71RC2 CCDC142-203ENST00000454193 2309 ntTSL 219.46■□□□□ 0.711e-6■■□□□ 13.6
LARP4Q71RC2 EIF2B4-201ENST00000347454 1792 ntAPPRIS P3 TSL 1 (best) BASIC19.33■□□□□ 0.681e-6■■□□□ 13.6
LARP4Q71RC2 IRF3-221ENST00000598808 1468 ntTSL 5 BASIC18.77■□□□□ 0.61e-6■■□□□ 13.6
LARP4Q71RC2 MYBL2-202ENST00000396863 2704 ntTSL 2 BASIC18.21■□□□□ 0.511e-6■■□□□ 13.6
LARP4Q71RC2 PSMB5-201ENST00000334454 796 ntTSL 517.79■□□□□ 0.443e-9■■□□□ 13.6
LARP4Q71RC2 SREBF1-204ENST00000395756 3026 ntTSL 217.72■□□□□ 0.433e-9■■□□□ 13.6
LARP4Q71RC2 EIF2B4-210ENST00000493344 1949 ntTSL 5 BASIC17.68■□□□□ 0.421e-6■■□□□ 13.6
LARP4Q71RC2 IRF3-203ENST00000377139 1613 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.411e-6■■□□□ 13.6
LARP4Q71RC2 MRPL53-202ENST00000409710 386 ntTSL 2 BASIC17.45■□□□□ 0.381e-6■■□□□ 13.6
LARP4Q71RC2 CDC37-210ENST00000593124 1389 ntTSL 517.43■□□□□ 0.381e-6■■□□□ 13.6
LARP4Q71RC2 IRF3-222ENST00000599144 1117 ntTSL 1 (best) BASIC17.35■□□□□ 0.371e-6■■□□□ 13.6
LARP4Q71RC2 FAM96B-206ENST00000569299 708 ntTSL 216.6■□□□□ 0.251e-6■■□□□ 13.6
LARP4Q71RC2 SREBF1-218ENST00000578469 588 ntTSL 316.53■□□□□ 0.243e-9■■□□□ 13.6
LARP4Q71RC2 SLC37A4-217ENST00000545985 2606 ntAPPRIS P1 TSL 5 BASIC16.5■□□□□ 0.231e-6■■□□□ 13.6
LARP4Q71RC2 SREBF1-203ENST00000395751 4653 ntTSL 216.45■□□□□ 0.223e-9■■□□□ 13.6
LARP4Q71RC2 SREBF1-213ENST00000485080 1230 ntTSL 516.43■□□□□ 0.223e-9■■□□□ 13.6
LARP4Q71RC2 EIF2B4-212ENST00000622434 1771 ntTSL 5 BASIC16.36■□□□□ 0.211e-6■■□□□ 13.6
LARP4Q71RC2 IRF3-202ENST00000377135 1442 ntTSL 1 (best) BASIC16.28■□□□□ 0.21e-6■■□□□ 13.6
LARP4Q71RC2 CHST14-201ENST00000306243 3574 ntAPPRIS P1 BASIC16.23■□□□□ 0.194e-12■■□□□ 13.6
LARP4Q71RC2 EIF2B4-206ENST00000451130 1633 ntTSL 1 (best) BASIC16.14■□□□□ 0.171e-6■■□□□ 13.6
LARP4Q71RC2 UPK3A-202ENST00000396082 627 ntAPPRIS ALT2 TSL 1 (best) BASIC16.02■□□□□ 0.161e-6■■□□□ 13.6
LARP4Q71RC2 SREBF1-201ENST00000261646 4178 ntAPPRIS P3 TSL 1 (best) BASIC15.85■□□□□ 0.133e-9■■□□□ 13.6
LARP4Q71RC2 DBNDD1-202ENST00000304733 2081 ntTSL 1 (best) BASIC15.71■□□□□ 0.111e-6■■□□□ 13.6
LARP4Q71RC2 IRF3-219ENST00000597636 2874 ntTSL 515.59■□□□□ 0.091e-6■■□□□ 13.6
Retrieved 100 of 15,922 protein–RNA pairs in 197.9 ms