Protein–RNA interactions for Protein: P67809

YBX1, Nuclease-sensitive element-binding protein 1, humanhuman

Known RBP Predictions only

Length 324 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
YBX1P67809 RASD1-201ENST00000225688 1746 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
YBX1P67809 LINC00511-201ENST00000453722 1716 ntTSL 2 BASIC18.73■□□□□ 0.59
YBX1P67809 CTSH-201ENST00000220166 2190 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
YBX1P67809 NRXN2-204ENST00000377559 6413 ntAPPRIS ALT2 TSL 1 (best) BASIC18.73■□□□□ 0.59
YBX1P67809 SKOR2-202ENST00000425639 3899 ntAPPRIS ALT2 TSL 5 BASIC18.73■□□□□ 0.59
YBX1P67809 ZNF326-202ENST00000361911 1538 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
YBX1P67809 NTN1-201ENST00000173229 5954 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
YBX1P67809 KRT15-203ENST00000393976 2394 ntAPPRIS P1 TSL 5 BASIC18.73■□□□□ 0.59
YBX1P67809 FENDRR-203ENST00000595886 3095 ntTSL 2 BASIC18.72■□□□□ 0.59
YBX1P67809 SNN-201ENST00000329565 3312 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
YBX1P67809 NPIPA8-201ENST00000525596 1565 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
YBX1P67809 AKT1-211ENST00000554848 1595 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
YBX1P67809 UBE2K-203ENST00000445950 2175 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
YBX1P67809 GMPPA-213ENST00000622191 1473 ntTSL 5 BASIC18.72■□□□□ 0.59
YBX1P67809 FARSA-207ENST00000588025 2057 ntTSL 5 BASIC18.72■□□□□ 0.59
YBX1P67809 CEMP1-202ENST00000567119 1374 ntAPPRIS P2 BASIC18.72■□□□□ 0.59
YBX1P67809 HAS3-201ENST00000219322 1163 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
YBX1P67809 POMC-202ENST00000380794 1295 ntAPPRIS P1 TSL 2 BASIC18.72■□□□□ 0.59
YBX1P67809 DUSP15-205ENST00000398084 1256 ntTSL 5 BASIC18.72■□□□□ 0.59
YBX1P67809 C16orf90-202ENST00000437192 907 ntAPPRIS P1 TSL 5 BASIC18.72■□□□□ 0.59
YBX1P67809 AC093827.2-201ENST00000512654 315 ntBASIC18.72■□□□□ 0.59
YBX1P67809 AC004706.3-201ENST00000634558 1009 ntTSL 5 BASIC18.72■□□□□ 0.59
YBX1P67809 ABCB9-202ENST00000344275 2394 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
YBX1P67809 TMEM70-201ENST00000312184 2018 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
YBX1P67809 TTLL3-209ENST00000426895 2767 ntAPPRIS P2 TSL 2 BASIC18.72■□□□□ 0.59
YBX1P67809 LRRC4B-202ENST00000599957 3019 ntAPPRIS P1 TSL 3 BASIC18.72■□□□□ 0.59
YBX1P67809 BACE1-204ENST00000445823 1408 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
YBX1P67809 FAM83E-201ENST00000263266 1926 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
YBX1P67809 DSCC1-201ENST00000313655 2314 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
YBX1P67809 MRPL2-202ENST00000388752 1588 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
YBX1P67809 NAA60-235ENST00000576916 1567 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
YBX1P67809 NPAS1-201ENST00000439365 1341 ntTSL 2 BASIC18.72■□□□□ 0.59
YBX1P67809 GDF10-201ENST00000580279 2458 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
YBX1P67809 CD55-201ENST00000314754 2220 ntAPPRIS ALT2 TSL 1 (best) BASIC18.72■□□□□ 0.59
YBX1P67809 RNF114-201ENST00000244061 2503 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
YBX1P67809 MTX1-202ENST00000368376 1632 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
YBX1P67809 AC020922.1-201ENST00000591954 3058 ntAPPRIS P1 TSL 5 BASIC18.71■□□□□ 0.59
YBX1P67809 CSF1-203ENST00000369801 1364 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
YBX1P67809 ABCG4-206ENST00000622721 2553 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
YBX1P67809 HOXD11-201ENST00000249504 1533 ntAPPRIS P1 TSL 3 BASIC18.71■□□□□ 0.59
YBX1P67809 EMX2-203ENST00000553456 2897 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
YBX1P67809 CTAG2-201ENST00000247306 993 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
YBX1P67809 COQ10B-203ENST00000409398 879 ntTSL 3 BASIC18.71■□□□□ 0.59
YBX1P67809 SAPCD2P4-201ENST00000424595 1171 ntBASIC18.71■□□□□ 0.59
YBX1P67809 AL049780.2-201ENST00000556236 367 ntTSL 3 BASIC18.71■□□□□ 0.59
YBX1P67809 MAEA-208ENST00000505839 1444 ntTSL 2 BASIC18.71■□□□□ 0.59
YBX1P67809 SKP2-208ENST00000546211 1589 ntTSL 5 BASIC18.71■□□□□ 0.59
YBX1P67809 UBE2I-203ENST00000397514 2976 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
YBX1P67809 ECHDC1-214ENST00000474289 2443 ntAPPRIS P3 TSL 5 BASIC18.71■□□□□ 0.59
YBX1P67809 MMP28-204ENST00000615136 2033 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
YBX1P67809 HSDL1-202ENST00000434463 1493 ntTSL 2 BASIC18.71■□□□□ 0.59
YBX1P67809 C1orf198-201ENST00000366663 3858 ntAPPRIS P3 TSL 1 (best) BASIC18.71■□□□□ 0.58
YBX1P67809 PGR-201ENST00000263463 2496 ntTSL 1 (best) BASIC18.71■□□□□ 0.58
YBX1P67809 RNF38-204ENST00000357058 5254 ntAPPRIS P1 TSL 5 BASIC18.7■□□□□ 0.58
YBX1P67809 TMEM175-220ENST00000515740 1514 ntTSL 3 BASIC18.7■□□□□ 0.58
YBX1P67809 ST3GAL4-205ENST00000449406 1669 ntTSL 5 BASIC18.7■□□□□ 0.58
YBX1P67809 DUSP15-209ENST00000486996 1651 ntTSL 2 BASIC18.7■□□□□ 0.58
YBX1P67809 LGR4-202ENST00000389858 5163 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
YBX1P67809 NBL1-212ENST00000621723 2133 ntAPPRIS P3 TSL 2 BASIC18.7■□□□□ 0.58
YBX1P67809 ZBTB48-202ENST00000377674 2293 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
YBX1P67809 BSX-201ENST00000343035 830 ntAPPRIS P1 TSL 5 BASIC18.7■□□□□ 0.58
YBX1P67809 GLI4-202ENST00000344692 1012 ntTSL 2 BASIC18.7■□□□□ 0.58
YBX1P67809 ASMTL-201ENST00000381317 2027 ntAPPRIS P3 TSL 1 (best) BASIC18.7■□□□□ 0.58
YBX1P67809 ASMTL-202ENST00000381333 2035 ntAPPRIS ALT2 TSL 2 BASIC18.7■□□□□ 0.58
YBX1P67809 RALGPS1-206ENST00000394011 819 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
YBX1P67809 FAM187A-202ENST00000412523 1748 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
YBX1P67809 WDR41-208ENST00000507029 1553 ntTSL 2 BASIC18.7■□□□□ 0.58
YBX1P67809 MTDH-203ENST00000519934 2184 ntTSL 5 BASIC18.7■□□□□ 0.58
YBX1P67809 MIXL1-202ENST00000542034 839 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
YBX1P67809 EFTUD1P1-201ENST00000558187 596 ntTSL 4 BASIC18.7■□□□□ 0.58
YBX1P67809 ELOC-209ENST00000602840 2780 ntTSL 5 BASIC18.7■□□□□ 0.58
YBX1P67809 SLC22A17-211ENST00000637426 1563 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
YBX1P67809 CASP9-210ENST00000546424 4463 ntAPPRIS ALT2 TSL 5 BASIC18.7■□□□□ 0.58
YBX1P67809 RAPGEF5-203ENST00000405243 2800 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
YBX1P67809 DACT2-204ENST00000610183 2088 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
YBX1P67809 CCDC3-201ENST00000378825 2731 ntAPPRIS P3 TSL 1 (best) BASIC18.7■□□□□ 0.58
YBX1P67809 P2RX3-204ENST00000616487 1346 ntTSL 5 BASIC18.7■□□□□ 0.58
YBX1P67809 TRIM7-205ENST00000422067 1954 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
YBX1P67809 SLC12A5-210ENST00000616202 2445 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
YBX1P67809 GTF3C5-201ENST00000342018 1905 ntTSL 5 BASIC18.69■□□□□ 0.58
YBX1P67809 FAM99A-201ENST00000382167 1432 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
YBX1P67809 TBC1D19-201ENST00000264866 2263 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
YBX1P67809 AL049812.1-201ENST00000432563 2267 ntBASIC18.69■□□□□ 0.58
YBX1P67809 OGFOD2-201ENST00000228922 1780 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
YBX1P67809 LIME1-201ENST00000309546 1178 ntAPPRIS P3 TSL 1 (best) BASIC18.69■□□□□ 0.58
YBX1P67809 CCDC34-201ENST00000317945 2109 ntAPPRIS P3 TSL 1 (best) BASIC18.69■□□□□ 0.58
YBX1P67809 IMMP2L-201ENST00000331762 1205 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
YBX1P67809 LINC01743-201ENST00000366308 964 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
YBX1P67809 ABCC5-211ENST00000446941 883 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
YBX1P67809 RBCK1-213ENST00000475269 1200 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
YBX1P67809 AC015712.2-203ENST00000560461 688 ntTSL 3 BASIC18.69■□□□□ 0.58
YBX1P67809 AC233702.5-201ENST00000584107 538 ntBASIC18.69■□□□□ 0.58
YBX1P67809 TNNT1-208ENST00000587465 1065 ntAPPRIS ALT2 TSL 5 BASIC18.69■□□□□ 0.58
YBX1P67809 TPGS2-221ENST00000614939 1268 ntTSL 4 BASIC18.69■□□□□ 0.58
YBX1P67809 AC113410.3-201ENST00000623366 203 ntBASIC18.69■□□□□ 0.58
YBX1P67809 CROCCP4-202ENST00000633627 573 ntTSL 3 BASIC18.69■□□□□ 0.58
YBX1P67809 CWH43-201ENST00000226432 2472 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
YBX1P67809 ANKRD65-201ENST00000427211 1976 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
YBX1P67809 ILKAP-201ENST00000254654 1490 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
YBX1P67809 HMBS-214ENST00000542729 1469 ntTSL 2 BASIC18.69■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 37.3 ms