Protein–RNA interactions for Protein: Q9Y5H2

PCDHGA11, Protocadherin gamma-A11, humanhuman

Predictions only

Length 935 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA11Q9Y5H2 CITED2-201ENST00000367651 2354 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
PCDHGA11Q9Y5H2 ESPN-202ENST00000416731 1338 ntTSL 5 BASIC18.64■□□□□ 0.57
PCDHGA11Q9Y5H2 COMMD7-202ENST00000446419 1343 ntAPPRIS ALT1 TSL 2 BASIC18.64■□□□□ 0.57
PCDHGA11Q9Y5H2 MB21D1-202ENST00000370318 1917 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
PCDHGA11Q9Y5H2 NECAB3-202ENST00000375238 1942 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
PCDHGA11Q9Y5H2 LARGE2-201ENST00000325468 2522 ntAPPRIS P3 TSL 1 (best) BASIC18.64■□□□□ 0.57
PCDHGA11Q9Y5H2 MIB2-231ENST00000518681 3116 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
PCDHGA11Q9Y5H2 CD8B-203ENST00000390655 1417 ntAPPRIS P2 TSL 1 (best) BASIC18.64■□□□□ 0.57
PCDHGA11Q9Y5H2 P2RX5-202ENST00000345901 2031 ntTSL 5 BASIC18.64■□□□□ 0.57
PCDHGA11Q9Y5H2 IRF7-203ENST00000397566 2051 ntAPPRIS P4 TSL 1 (best) BASIC18.64■□□□□ 0.57
PCDHGA11Q9Y5H2 LAMP1-201ENST00000332556 2699 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
PCDHGA11Q9Y5H2 PSMB11-201ENST00000408907 2110 ntAPPRIS P1 BASIC18.64■□□□□ 0.57
PCDHGA11Q9Y5H2 GPR20-201ENST00000377741 1515 ntAPPRIS P1 TSL 3 BASIC18.64■□□□□ 0.57
PCDHGA11Q9Y5H2 UBE2Q2-204ENST00000561851 1582 ntTSL 2 BASIC18.64■□□□□ 0.57
PCDHGA11Q9Y5H2 NAA60-235ENST00000576916 1567 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
PCDHGA11Q9Y5H2 FNIP1-204ENST00000511848 1720 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
PCDHGA11Q9Y5H2 AC104417.2-201ENST00000562989 1793 ntBASIC18.63■□□□□ 0.57
PCDHGA11Q9Y5H2 FDXR-217ENST00000582944 1766 ntTSL 2 BASIC18.63■□□□□ 0.57
PCDHGA11Q9Y5H2 ZNF843-203ENST00000618063 1765 ntAPPRIS P2 TSL 1 (best) BASIC18.63■□□□□ 0.57
PCDHGA11Q9Y5H2 PHF12-202ENST00000332830 4759 ntAPPRIS P1 TSL 2 BASIC18.63■□□□□ 0.57
PCDHGA11Q9Y5H2 ISOC1-201ENST00000173527 1940 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
PCDHGA11Q9Y5H2 CTBP2-202ENST00000334808 2130 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
PCDHGA11Q9Y5H2 CLTA-202ENST00000345519 1073 ntAPPRIS ALT1 TSL 1 (best) BASIC18.63■□□□□ 0.57
PCDHGA11Q9Y5H2 GTF2A2-203ENST00000396061 758 ntAPPRIS P1 TSL 2 BASIC18.63■□□□□ 0.57
PCDHGA11Q9Y5H2 MAP1LC3A-203ENST00000397709 698 ntAPPRIS P1 TSL 3 BASIC18.63■□□□□ 0.57
PCDHGA11Q9Y5H2 TMEM9-209ENST00000485839 938 ntAPPRIS P3 TSL 2 BASIC18.63■□□□□ 0.57
PCDHGA11Q9Y5H2 DHRS4-206ENST00000558581 1143 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
PCDHGA11Q9Y5H2 AC022211.2-202ENST00000582668 546 ntTSL 4 BASIC18.63■□□□□ 0.57
PCDHGA11Q9Y5H2 FAM32A-205ENST00000589852 1168 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
PCDHGA11Q9Y5H2 AC004264.1-201ENST00000608354 794 ntBASIC18.63■□□□□ 0.57
PCDHGA11Q9Y5H2 CDKN2B-AS1-217ENST00000585267 1337 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
PCDHGA11Q9Y5H2 DNAJC11-201ENST00000294401 2210 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
PCDHGA11Q9Y5H2 ODF3L2-202ENST00000382696 1393 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
PCDHGA11Q9Y5H2 IL4I1-201ENST00000341114 2349 ntAPPRIS P4 TSL 1 (best) BASIC18.63■□□□□ 0.57
PCDHGA11Q9Y5H2 PCDHA4-201ENST00000378125 2328 ntTSL 5 BASIC18.63■□□□□ 0.57
PCDHGA11Q9Y5H2 ASB18-201ENST00000409749 1401 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
PCDHGA11Q9Y5H2 KIF1BP-201ENST00000361983 2544 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
PCDHGA11Q9Y5H2 AC008691.1-203ENST00000515337 1580 ntTSL 2 BASIC18.63■□□□□ 0.57
PCDHGA11Q9Y5H2 NTMT1-209ENST00000611055 1562 ntAPPRIS P1 TSL 3 BASIC18.63■□□□□ 0.57
PCDHGA11Q9Y5H2 ENTPD6-202ENST00000360031 2766 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
PCDHGA11Q9Y5H2 OTUD1-201ENST00000376495 2933 ntAPPRIS P1 BASIC18.63■□□□□ 0.57
PCDHGA11Q9Y5H2 B3GALNT2-201ENST00000313984 1874 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
PCDHGA11Q9Y5H2 PCID2-202ENST00000337344 1898 ntAPPRIS P1 TSL 2 BASIC18.63■□□□□ 0.57
PCDHGA11Q9Y5H2 GCGR-202ENST00000570996 1872 ntAPPRIS ALT2 TSL 2 BASIC18.63■□□□□ 0.57
PCDHGA11Q9Y5H2 NR1H2-201ENST00000253727 1998 ntAPPRIS P2 TSL 1 (best) BASIC18.62■□□□□ 0.57
PCDHGA11Q9Y5H2 POC1A-202ENST00000394970 1999 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
PCDHGA11Q9Y5H2 CMTM7-201ENST00000334983 2038 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
PCDHGA11Q9Y5H2 NRXN1-208ENST00000405472 5724 ntAPPRIS ALT2 TSL 5 BASIC18.62■□□□□ 0.57
PCDHGA11Q9Y5H2 BRAF-201ENST00000288602 2480 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
PCDHGA11Q9Y5H2 RHOT1-202ENST00000354266 2919 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
PCDHGA11Q9Y5H2 ANG-201ENST00000336811 1222 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
PCDHGA11Q9Y5H2 BID-202ENST00000342111 854 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
PCDHGA11Q9Y5H2 ESRRAP1-201ENST00000400596 1257 ntBASIC18.62■□□□□ 0.57
PCDHGA11Q9Y5H2 LY6E-202ENST00000429120 1173 ntAPPRIS P2 TSL 1 (best) BASIC18.62■□□□□ 0.57
PCDHGA11Q9Y5H2 MCRIP1-201ENST00000455127 1209 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
PCDHGA11Q9Y5H2 HOXB-AS3-204ENST00000466037 522 ntTSL 3 BASIC18.62■□□□□ 0.57
PCDHGA11Q9Y5H2 F2R-202ENST00000505600 442 ntTSL 2 BASIC18.62■□□□□ 0.57
PCDHGA11Q9Y5H2 NOXO1-205ENST00000566005 1144 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
PCDHGA11Q9Y5H2 ASPSCR1-211ENST00000581647 720 ntTSL 2 BASIC18.62■□□□□ 0.57
PCDHGA11Q9Y5H2 ELAC1-203ENST00000588577 694 ntTSL 2 BASIC18.62■□□□□ 0.57
PCDHGA11Q9Y5H2 FP475955.1-201ENST00000624937 553 ntTSL 4 BASIC18.62■□□□□ 0.57
PCDHGA11Q9Y5H2 AATK-AS1-203ENST00000637878 1306 ntAPPRIS P1 TSL 5 BASIC18.62■□□□□ 0.57
PCDHGA11Q9Y5H2 IL15-208ENST00000529613 1355 ntAPPRIS P1 TSL 5 BASIC18.62■□□□□ 0.57
PCDHGA11Q9Y5H2 ETV4-204ENST00000545089 1628 ntTSL 2 BASIC18.62■□□□□ 0.57
PCDHGA11Q9Y5H2 AC126773.2-201ENST00000562172 1682 ntTSL 3 BASIC18.62■□□□□ 0.57
PCDHGA11Q9Y5H2 KANSL1-202ENST00000432791 5343 ntAPPRIS P3 TSL 1 (best) BASIC18.62■□□□□ 0.57
PCDHGA11Q9Y5H2 ARMC6-220ENST00000546344 1814 ntTSL 2 BASIC18.62■□□□□ 0.57
PCDHGA11Q9Y5H2 CORO1B-201ENST00000341356 1881 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
PCDHGA11Q9Y5H2 LAG3-201ENST00000203629 1974 ntAPPRIS P2 TSL 1 (best) BASIC18.62■□□□□ 0.57
PCDHGA11Q9Y5H2 CTSH-201ENST00000220166 2190 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
PCDHGA11Q9Y5H2 CBX1-202ENST00000393408 2422 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
PCDHGA11Q9Y5H2 ECHDC1-214ENST00000474289 2443 ntAPPRIS P3 TSL 5 BASIC18.62■□□□□ 0.57
PCDHGA11Q9Y5H2 AC069544.2-201ENST00000640019 2528 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
PCDHGA11Q9Y5H2 PLPPR2-208ENST00000591608 2552 ntAPPRIS ALT2 TSL 2 BASIC18.62■□□□□ 0.57
PCDHGA11Q9Y5H2 PHF12-201ENST00000268756 2957 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
PCDHGA11Q9Y5H2 RIMKLB-202ENST00000357529 5830 ntAPPRIS P1 TSL 5 BASIC18.62■□□□□ 0.57
PCDHGA11Q9Y5H2 BMP1-202ENST00000306385 4229 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
PCDHGA11Q9Y5H2 ZDHHC3-205ENST00000424952 2687 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
PCDHGA11Q9Y5H2 PGR-201ENST00000263463 2496 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
PCDHGA11Q9Y5H2 KRT6C-201ENST00000252250 2289 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
PCDHGA11Q9Y5H2 KRT6B-201ENST00000252252 2282 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
PCDHGA11Q9Y5H2 LRWD1-201ENST00000292616 2215 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
PCDHGA11Q9Y5H2 TMEM70-201ENST00000312184 2018 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
PCDHGA11Q9Y5H2 SLC5A10-205ENST00000417251 1984 ntTSL 2 BASIC18.61■□□□□ 0.57
PCDHGA11Q9Y5H2 SLC25A3-201ENST00000188376 1909 ntAPPRIS ALT1 TSL 1 (best) BASIC18.61■□□□□ 0.57
PCDHGA11Q9Y5H2 DCAF4-201ENST00000353777 1940 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
PCDHGA11Q9Y5H2 PRKCSH-209ENST00000589838 1898 ntAPPRIS P3 TSL 1 (best) BASIC18.61■□□□□ 0.57
PCDHGA11Q9Y5H2 ATP6V0B-213ENST00000532642 1685 ntTSL 2 BASIC18.61■□□□□ 0.57
PCDHGA11Q9Y5H2 LMNB1-202ENST00000395354 1572 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
PCDHGA11Q9Y5H2 HOXD11-201ENST00000249504 1533 ntAPPRIS P1 TSL 3 BASIC18.61■□□□□ 0.57
PCDHGA11Q9Y5H2 GCOM1-201ENST00000380568 1516 ntAPPRIS ALT2 TSL 2 BASIC18.61■□□□□ 0.57
PCDHGA11Q9Y5H2 CYHR1-202ENST00000403000 1477 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
PCDHGA11Q9Y5H2 LETM2-208ENST00000524874 1459 ntTSL 5 BASIC18.61■□□□□ 0.57
PCDHGA11Q9Y5H2 OLFM1-202ENST00000277415 1014 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
PCDHGA11Q9Y5H2 ZNF436-AS1-202ENST00000437367 606 ntTSL 2 BASIC18.61■□□□□ 0.57
PCDHGA11Q9Y5H2 BAALC-AS1-206ENST00000521383 736 ntTSL 3 BASIC18.61■□□□□ 0.57
PCDHGA11Q9Y5H2 B3GAT3-205ENST00000534026 1120 ntTSL 2 BASIC18.61■□□□□ 0.57
PCDHGA11Q9Y5H2 C17orf97-203ENST00000571106 736 ntAPPRIS ALT2 TSL 2 BASIC18.61■□□□□ 0.57
PCDHGA11Q9Y5H2 PSMC3IP-208ENST00000590760 664 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
PCDHGA11Q9Y5H2 CBFA2T2-201ENST00000342704 2864 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 38.7 ms