Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 ACTG1-201ENST00000331925 1994 ntAPPRIS P1 TSL 1 (best) BASIC26.68■■□□□ 1.86
MSH6P52701 LINC01700-201ENST00000433952 1598 ntTSL 1 (best) BASIC26.68■■□□□ 1.86
MSH6P52701 EXOSC4-201ENST00000316052 887 ntAPPRIS P1 TSL 1 (best) BASIC26.68■■□□□ 1.86
MSH6P52701 CMTM1-204ENST00000336328 606 ntAPPRIS ALT2 TSL 1 (best) BASIC26.68■■□□□ 1.86
MSH6P52701 SEC61G-203ENST00000415949 732 ntAPPRIS P1 TSL 5 BASIC26.68■■□□□ 1.86
MSH6P52701 NICN1-204ENST00000436744 1271 ntTSL 2 BASIC26.68■■□□□ 1.86
MSH6P52701 CMTM1-213ENST00000529506 581 ntAPPRIS ALT2 TSL 1 (best) BASIC26.68■■□□□ 1.86
MSH6P52701 HDDC3-205ENST00000559898 1024 ntTSL 1 (best) BASIC26.68■■□□□ 1.86
MSH6P52701 L3HYPDH-201ENST00000247194 1527 ntAPPRIS P1 TSL 1 (best) BASIC26.68■■□□□ 1.86
MSH6P52701 FAM57B-204ENST00000564806 1710 ntTSL 2 BASIC26.67■■□□□ 1.86
MSH6P52701 C6orf203-202ENST00000405204 1420 ntAPPRIS P1 TSL 2 BASIC26.67■■□□□ 1.86
MSH6P52701 SMYD2-201ENST00000366957 1671 ntAPPRIS P1 TSL 1 (best) BASIC26.67■■□□□ 1.86
MSH6P52701 LINC01558-202ENST00000495520 1652 ntTSL 2 BASIC26.67■■□□□ 1.86
MSH6P52701 NAGK-229ENST00000613852 1801 ntTSL 1 (best) BASIC26.67■■□□□ 1.86
MSH6P52701 CPNE9-202ENST00000383831 1751 ntTSL 5 BASIC26.67■■□□□ 1.86
MSH6P52701 AKR7L-201ENST00000420396 1240 ntAPPRIS ALT2 TSL 5 BASIC26.67■■□□□ 1.86
MSH6P52701 KRT16P4-201ENST00000453883 522 ntBASIC26.67■■□□□ 1.86
MSH6P52701 AC009084.1-201ENST00000566869 317 ntTSL 5 BASIC26.67■■□□□ 1.86
MSH6P52701 AC024243.1-201ENST00000609234 778 ntBASIC26.67■■□□□ 1.86
MSH6P52701 VPS51-217ENST00000639871 243 ntTSL 5 BASIC26.67■■□□□ 1.86
MSH6P52701 KCNK17-202ENST00000453413 1706 ntAPPRIS ALT2 TSL 5 BASIC26.67■■□□□ 1.86
MSH6P52701 BCS1L-201ENST00000359273 1454 ntAPPRIS P1 TSL 1 (best) BASIC26.67■■□□□ 1.86
MSH6P52701 ITGB1BP1-203ENST00000359712 2126 ntTSL 2 BASIC26.67■■□□□ 1.86
MSH6P52701 TSPAN15-201ENST00000373290 1698 ntAPPRIS P1 TSL 1 (best) BASIC26.67■■□□□ 1.86
MSH6P52701 RITA1-201ENST00000548278 2053 ntAPPRIS P1 TSL 1 (best) BASIC26.67■■□□□ 1.86
MSH6P52701 PHKG2-202ENST00000424889 1566 ntTSL 2 BASIC26.66■■□□□ 1.86
MSH6P52701 CHADL-201ENST00000216241 2533 ntAPPRIS P1 TSL 1 (best) BASIC26.66■■□□□ 1.86
MSH6P52701 SLC35F5-203ENST00000409342 2284 ntTSL 2 BASIC26.66■■□□□ 1.86
MSH6P52701 HDDC3-201ENST00000330334 1047 ntTSL 1 (best) BASIC26.66■■□□□ 1.86
MSH6P52701 HLA-F-217ENST00000334668 1283 ntAPPRIS ALT2 BASIC26.66■■□□□ 1.86
MSH6P52701 MRPL43-208ENST00000370242 884 ntTSL 2 BASIC26.66■■□□□ 1.86
MSH6P52701 SYS1-202ENST00000372727 813 ntAPPRIS P1 TSL 3 BASIC26.66■■□□□ 1.86
MSH6P52701 HLA-F-220ENST00000434407 884 ntBASIC26.66■■□□□ 1.86
MSH6P52701 EFCAB11-211ENST00000556609 568 ntTSL 3 BASIC26.66■■□□□ 1.86
MSH6P52701 NME4-212ENST00000621774 904 ntTSL 3 BASIC26.66■■□□□ 1.86
MSH6P52701 FADS6-204ENST00000614223 2044 ntAPPRIS ALT2 TSL 5 BASIC26.66■■□□□ 1.86
MSH6P52701 SLC36A1-209ENST00000521925 1621 ntTSL 1 (best) BASIC26.66■■□□□ 1.86
MSH6P52701 UNC93B1-201ENST00000227471 2316 ntAPPRIS P1 TSL 1 (best) BASIC26.66■■□□□ 1.86
MSH6P52701 C19orf12-201ENST00000323670 2464 ntAPPRIS P1 TSL 2 BASIC26.65■■□□□ 1.86
MSH6P52701 ILDR2-206ENST00000528703 2446 ntAPPRIS ALT2 TSL 5 BASIC26.65■■□□□ 1.86
MSH6P52701 TSR2-201ENST00000375151 1534 ntAPPRIS P1 TSL 1 (best) BASIC26.65■■□□□ 1.86
MSH6P52701 AC140125.2-201ENST00000502515 1517 ntTSL 1 (best) BASIC26.65■■□□□ 1.86
MSH6P52701 RCN3-201ENST00000270645 1859 ntAPPRIS P1 TSL 1 (best) BASIC26.65■■□□□ 1.86
MSH6P52701 AC116565.2-201ENST00000637674 1854 ntTSL 2 BASIC26.65■■□□□ 1.86
MSH6P52701 RASGEF1C-201ENST00000361132 2243 ntAPPRIS P1 TSL 1 (best) BASIC26.65■■□□□ 1.86
MSH6P52701 AC092720.2-201ENST00000602388 1665 ntBASIC26.65■■□□□ 1.86
MSH6P52701 RAP1B-204ENST00000393436 2049 ntAPPRIS P1 TSL 1 (best) BASIC26.65■■□□□ 1.86
MSH6P52701 SPCS1-201ENST00000233025 1082 ntTSL 1 (best) BASIC26.65■■□□□ 1.86
MSH6P52701 ATP5J-201ENST00000284971 614 ntAPPRIS P1 TSL 1 (best) BASIC26.65■■□□□ 1.86
MSH6P52701 CD1E-209ENST00000368164 869 ntTSL 1 (best) BASIC26.65■■□□□ 1.86
MSH6P52701 AL049795.1-201ENST00000373604 642 ntTSL 3 BASIC26.65■■□□□ 1.86
MSH6P52701 C7orf50-203ENST00000397100 1264 ntAPPRIS P2 TSL 3 BASIC26.65■■□□□ 1.86
MSH6P52701 C1QB-203ENST00000509305 1254 ntAPPRIS P1 TSL 1 (best) BASIC26.65■■□□□ 1.86
MSH6P52701 NAA38-203ENST00000575071 553 ntTSL 2 BASIC26.65■■□□□ 1.86
MSH6P52701 SRSF1-209ENST00000585096 568 ntTSL 4 BASIC26.65■■□□□ 1.86
MSH6P52701 AC079602.3-201ENST00000623931 403 ntBASIC26.65■■□□□ 1.86
MSH6P52701 NDUFAF6-203ENST00000396124 1798 ntAPPRIS P1 TSL 2 BASIC26.65■■□□□ 1.86
MSH6P52701 C2orf72-201ENST00000373640 3657 ntAPPRIS P1 TSL 2 BASIC26.65■■□□□ 1.86
MSH6P52701 MPPED1-203ENST00000443721 2507 ntAPPRIS P1 TSL 2 BASIC26.65■■□□□ 1.86
MSH6P52701 PRKAR1B-211ENST00000537384 2533 ntAPPRIS P1 TSL 5 BASIC26.65■■□□□ 1.86
MSH6P52701 CXorf40A-208ENST00000434353 1524 ntAPPRIS ALT1 TSL 5 BASIC26.65■■□□□ 1.86
MSH6P52701 CDH5-202ENST00000539168 1672 ntTSL 2 BASIC26.65■■□□□ 1.86
MSH6P52701 ASPG-201ENST00000546892 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC26.64■■□□□ 1.86
MSH6P52701 WRNIP1-204ENST00000380773 2670 ntAPPRIS P1 TSL 1 (best) BASIC26.64■■□□□ 1.86
MSH6P52701 VAMP5-201ENST00000306384 689 ntAPPRIS P1 TSL 1 (best) BASIC26.64■■□□□ 1.86
MSH6P52701 RPS6KB2-201ENST00000312629 1733 ntAPPRIS P1 TSL 1 (best) BASIC26.64■■□□□ 1.86
MSH6P52701 CKLF-202ENST00000345436 571 ntAPPRIS ALT2 TSL 1 (best) BASIC26.64■■□□□ 1.86
MSH6P52701 ISLR2-202ENST00000419208 2306 ntTSL 1 (best) BASIC26.64■■□□□ 1.86
MSH6P52701 EEF1E1-202ENST00000429723 562 ntTSL 3 BASIC26.64■■□□□ 1.86
MSH6P52701 LINC01770-202ENST00000430109 510 ntTSL 3 BASIC26.64■■□□□ 1.86
MSH6P52701 CABP4-202ENST00000438189 1426 ntTSL 1 (best) BASIC26.64■■□□□ 1.86
MSH6P52701 RSRC1-211ENST00000480820 1410 ntAPPRIS P1 TSL 5 BASIC26.64■■□□□ 1.86
MSH6P52701 AL356056.2-201ENST00000506914 669 ntTSL 4 BASIC26.64■■□□□ 1.86
MSH6P52701 IFNL4-202ENST00000616270 1132 ntAPPRIS ALT2 TSL 1 (best) BASIC26.64■■□□□ 1.86
MSH6P52701 CYP1B1-AS1-214ENST00000620177 554 ntTSL 4 BASIC26.64■■□□□ 1.86
MSH6P52701 ST3GAL3-239ENST00000545417 1667 ntTSL 5 BASIC26.64■■□□□ 1.85
MSH6P52701 TMEM204-202ENST00000566264 1938 ntAPPRIS P1 TSL 1 (best) BASIC26.64■■□□□ 1.85
MSH6P52701 MYBL2-201ENST00000217026 2639 ntAPPRIS P1 TSL 1 (best) BASIC26.64■■□□□ 1.85
MSH6P52701 FEM1AP4-201ENST00000443167 1987 ntBASIC26.63■■□□□ 1.85
MSH6P52701 CRTC3-208ENST00000560098 1421 ntTSL 1 (best) BASIC26.63■■□□□ 1.85
MSH6P52701 MIR574-201ENST00000385209 96 ntBASIC26.63■■□□□ 1.85
MSH6P52701 CST3-202ENST00000398409 832 ntAPPRIS P1 TSL 3 BASIC26.63■■□□□ 1.85
MSH6P52701 AL161452.1-201ENST00000415062 1117 ntTSL 1 (best) BASIC26.63■■□□□ 1.85
MSH6P52701 SLC2A1-204ENST00000460369 541 ntTSL 2 BASIC26.63■■□□□ 1.85
MSH6P52701 ZBED5-AS1-202ENST00000529014 771 ntTSL 5 BASIC26.63■■□□□ 1.85
MSH6P52701 UBXN1-210ENST00000529640 1110 ntAPPRIS ALT1 TSL 5 BASIC26.63■■□□□ 1.85
MSH6P52701 AC079031.1-201ENST00000542627 1035 ntTSL 3 BASIC26.63■■□□□ 1.85
MSH6P52701 AL512343.2-201ENST00000609423 490 ntTSL 2 BASIC26.63■■□□□ 1.85
MSH6P52701 TSPAN17-207ENST00000508164 2457 ntTSL 1 (best) BASIC26.63■■□□□ 1.85
MSH6P52701 GAMT-202ENST00000447102 1769 ntTSL 2 BASIC26.63■■□□□ 1.85
MSH6P52701 ZBTB22-208ENST00000431845 2651 ntAPPRIS P1 TSL 1 (best) BASIC26.63■■□□□ 1.85
MSH6P52701 TNFRSF19-202ENST00000382258 1625 ntAPPRIS P4 TSL 1 (best) BASIC26.63■■□□□ 1.85
MSH6P52701 BCKDK-203ENST00000394950 1997 ntTSL 2 BASIC26.63■■□□□ 1.85
MSH6P52701 FBXO27-207ENST00000600828 1557 ntAPPRIS ALT1 TSL 5 BASIC26.63■■□□□ 1.85
MSH6P52701 EMC8-202ENST00000435200 1935 ntTSL 2 BASIC26.62■■□□□ 1.85
MSH6P52701 AGAP2-AS1-201ENST00000542466 1500 ntTSL 1 (best) BASIC26.62■■□□□ 1.85
MSH6P52701 AC080013.1-203ENST00000468242 720 ntTSL 5 BASIC26.62■■□□□ 1.85
MSH6P52701 AC092183.1-201ENST00000469884 875 ntBASIC26.62■■□□□ 1.85
MSH6P52701 AC080013.1-201ENST00000495318 566 ntTSL 4 BASIC26.62■■□□□ 1.85
MSH6P52701 AC036176.1-201ENST00000589905 785 ntTSL 2 BASIC26.62■■□□□ 1.85
Retrieved 100 of 98,524 protein–RNA pairs in 21.7 ms