Protein–RNA interactions for Protein: P01375

TNF, Tumor necrosis factor, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFP01375 TSPY10-202ENST00000444056 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
TNFP01375 NOL7-202ENST00000451315 1184 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
TNFP01375 BDKRB1-204ENST00000611804 1085 ntAPPRIS P1 BASIC18.79■□□□□ 0.6
TNFP01375 SUSD3-205ENST00000617293 1076 ntAPPRIS ALT2 TSL 3 BASIC18.79■□□□□ 0.6
TNFP01375 AC009542.2-201ENST00000637483 1189 ntTSL 5 BASIC18.79■□□□□ 0.6
TNFP01375 NFE2L1-204ENST00000536222 2172 ntTSL 2 BASIC18.79■□□□□ 0.6
TNFP01375 SMIM3-201ENST00000526627 2332 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
TNFP01375 MYCN-201ENST00000281043 2602 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
TNFP01375 CEBPA-201ENST00000498907 2631 ntAPPRIS P1 BASIC18.79■□□□□ 0.6
TNFP01375 CSNK1G2-201ENST00000255641 2918 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
TNFP01375 AC139491.1-201ENST00000512675 1516 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
TNFP01375 PRKAR2A-206ENST00000454963 1849 ntAPPRIS P1 TSL 2 BASIC18.79■□□□□ 0.6
TNFP01375 DIAPH1-203ENST00000389057 5762 ntAPPRIS ALT2 TSL 5 BASIC18.79■□□□□ 0.6
TNFP01375 RAB11FIP4-201ENST00000394744 1968 ntTSL 2 BASIC18.79■□□□□ 0.6
TNFP01375 DNAJC1-202ENST00000376980 2106 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
TNFP01375 ADGRA3-204ENST00000502482 2870 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
TNFP01375 GALNT13-201ENST00000392825 5536 ntAPPRIS P1 TSL 2 BASIC18.78■□□□□ 0.6
TNFP01375 MAG-202ENST00000392213 2390 ntAPPRIS P4 TSL 1 (best) BASIC18.78■□□□□ 0.6
TNFP01375 CENPA-202ENST00000335756 1452 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
TNFP01375 ST3GAL5-222ENST00000638572 4431 ntAPPRIS P2 TSL 1 (best) BASIC18.78■□□□□ 0.6
TNFP01375 PCSK6-217ENST00000618548 4269 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
TNFP01375 TMPRSS5-212ENST00000545579 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
TNFP01375 WIPF1-202ENST00000359761 2003 ntAPPRIS P2 TSL 1 (best) BASIC18.78■□□□□ 0.6
TNFP01375 PVRIG-201ENST00000317271 1583 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
TNFP01375 TGFBR1-201ENST00000374990 5720 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
TNFP01375 ROCK2-202ENST00000315872 8292 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
TNFP01375 COLCA2-201ENST00000398035 1414 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
TNFP01375 SCGB3A1-201ENST00000292641 521 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
TNFP01375 FGF8-201ENST00000320185 799 ntAPPRIS P4 TSL 1 (best) BASIC18.78■□□□□ 0.6
TNFP01375 ST8SIA1-202ENST00000381424 1036 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
TNFP01375 TNNT3-206ENST00000381579 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
TNFP01375 AL035541.1-201ENST00000424850 823 ntTSL 2 BASIC18.78■□□□□ 0.6
TNFP01375 AC009185.1-201ENST00000517634 911 ntTSL 3 BASIC18.78■□□□□ 0.6
TNFP01375 IGHMBP2-205ENST00000539224 785 ntTSL 3 BASIC18.78■□□□□ 0.6
TNFP01375 ATP6V0C-203ENST00000565223 668 ntTSL 3 BASIC18.78■□□□□ 0.6
TNFP01375 ATP6V0C-204ENST00000568562 477 ntTSL 3 BASIC18.78■□□□□ 0.6
TNFP01375 AC006011.2-201ENST00000621313 1158 ntBASIC18.78■□□□□ 0.6
TNFP01375 AL138966.2-201ENST00000621997 464 ntBASIC18.78■□□□□ 0.6
TNFP01375 GUCY1A3-210ENST00000513574 2656 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
TNFP01375 CSPG5-201ENST00000264723 4080 ntAPPRIS P3 TSL 1 (best) BASIC18.78■□□□□ 0.6
TNFP01375 HOOK1-201ENST00000371208 5857 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
TNFP01375 KRT18-207ENST00000550600 1696 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
TNFP01375 AL390860.1-201ENST00000449298 1541 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
TNFP01375 RSPO1-201ENST00000356545 2621 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
TNFP01375 PQLC2-201ENST00000375153 2153 ntAPPRIS P1 TSL 2 BASIC18.78■□□□□ 0.6
TNFP01375 VGF-201ENST00000249330 2575 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
TNFP01375 C11orf49-201ENST00000278460 1645 ntAPPRIS P3 TSL 1 (best) BASIC18.78■□□□□ 0.6
TNFP01375 TREX2-203ENST00000338525 2116 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
TNFP01375 TYMS-201ENST00000323224 1327 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
TNFP01375 RHBDL1-201ENST00000219551 1560 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
TNFP01375 QPCTL-202ENST00000366382 1814 ntTSL 2 BASIC18.77■□□□□ 0.6
TNFP01375 BAD-201ENST00000309032 929 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
TNFP01375 CCK-201ENST00000334681 830 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
TNFP01375 PRICKLE4-202ENST00000394260 1035 ntAPPRIS ALT2 TSL 2 BASIC18.77■□□□□ 0.6
TNFP01375 PRICKLE4-203ENST00000394263 1155 ntAPPRIS P2 TSL 5 BASIC18.77■□□□□ 0.6
TNFP01375 AP003041.3-201ENST00000527151 707 ntBASIC18.77■□□□□ 0.6
TNFP01375 AL513523.10-201ENST00000623024 1186 ntAPPRIS P1 TSL 5 BASIC18.77■□□□□ 0.6
TNFP01375 ISOC2-201ENST00000085068 1122 ntTSL 2 BASIC18.77■□□□□ 0.6
TNFP01375 DLK2-201ENST00000357338 2038 ntAPPRIS P3 TSL 2 BASIC18.77■□□□□ 0.6
TNFP01375 C7orf43-206ENST00000456769 2046 ntTSL 2 BASIC18.77■□□□□ 0.6
TNFP01375 FAM3C-201ENST00000359943 2508 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
TNFP01375 SOX8-201ENST00000293894 3049 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
TNFP01375 B3GALNT2-201ENST00000313984 1874 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
TNFP01375 GAL3ST1-206ENST00000406955 1635 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
TNFP01375 GABRA2-214ENST00000515082 2366 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
TNFP01375 PCSK6-220ENST00000622483 3132 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.6
TNFP01375 JDP2-201ENST00000267569 1700 ntTSL 1 (best) BASIC18.77■□□□□ 0.59
TNFP01375 C1orf210-202ENST00000523677 1478 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
TNFP01375 TRIM3-202ENST00000359518 3042 ntAPPRIS P1 TSL 5 BASIC18.76■□□□□ 0.59
TNFP01375 MOK-201ENST00000361847 1940 ntAPPRIS P3 TSL 1 (best) BASIC18.76■□□□□ 0.59
TNFP01375 LSR-214ENST00000621372 2274 ntAPPRIS P4 TSL 1 (best) BASIC18.76■□□□□ 0.59
TNFP01375 HIKESHI-207ENST00000533986 1694 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
TNFP01375 TMEM110-MUSTN1-202ENST00000504329 1405 ntAPPRIS P1 TSL 5 BASIC18.76■□□□□ 0.59
TNFP01375 UCHL5-202ENST00000367449 1507 ntAPPRIS ALT1 TSL 1 (best) BASIC18.76■□□□□ 0.59
TNFP01375 C12orf42-205ENST00000548048 1532 ntAPPRIS ALT2 TSL 5 BASIC18.76■□□□□ 0.59
TNFP01375 CXCR3-201ENST00000373691 1861 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
TNFP01375 FBXO27-201ENST00000292853 2330 ntAPPRIS P2 TSL 1 (best) BASIC18.76■□□□□ 0.59
TNFP01375 ETV4-204ENST00000545089 1628 ntTSL 2 BASIC18.76■□□□□ 0.59
TNFP01375 DOC2A-209ENST00000564979 1630 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
TNFP01375 LINC01381-201ENST00000431650 466 ntTSL 3 BASIC18.76■□□□□ 0.59
TNFP01375 TSPY21P-201ENST00000433481 731 ntBASIC18.76■□□□□ 0.59
TNFP01375 AL109797.1-201ENST00000452501 835 ntTSL 2 BASIC18.76■□□□□ 0.59
TNFP01375 AL451069.1-201ENST00000455414 634 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
TNFP01375 AP002433.1-201ENST00000525548 964 ntTSL 3 BASIC18.76■□□□□ 0.59
TNFP01375 PSMD8-202ENST00000585598 541 ntTSL 5 BASIC18.76■□□□□ 0.59
TNFP01375 NTF6B-201ENST00000591913 560 ntBASIC18.76■□□□□ 0.59
TNFP01375 AC141257.4-201ENST00000634557 245 ntBASIC18.76■□□□□ 0.59
TNFP01375 AC136944.6-201ENST00000634818 245 ntBASIC18.76■□□□□ 0.59
TNFP01375 RDX-202ENST00000405097 2761 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
TNFP01375 BSN-AS2-201ENST00000421598 2603 ntTSL 2 BASIC18.76■□□□□ 0.59
TNFP01375 DVL3-203ENST00000431765 2294 ntTSL 5 BASIC18.76■□□□□ 0.59
TNFP01375 IL6R-208ENST00000622330 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
TNFP01375 SH2B3-201ENST00000341259 5406 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
TNFP01375 RPL7-202ENST00000396465 1308 ntTSL 3 BASIC18.75■□□□□ 0.59
TNFP01375 ACTL6A-201ENST00000392662 1899 ntTSL 2 BASIC18.75■□□□□ 0.59
TNFP01375 MRM1-204ENST00000614766 1857 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
TNFP01375 CCNC-207ENST00000518714 1426 ntTSL 5 BASIC18.75■□□□□ 0.59
TNFP01375 MTX1-202ENST00000368376 1632 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
TNFP01375 CNOT9-209ENST00000627282 1621 ntTSL 2 BASIC18.75■□□□□ 0.59
TNFP01375 CHD1L-201ENST00000361293 2484 ntTSL 2 BASIC18.75■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 20.7 ms