Protein–RNA interactions for Protein: O43490

PROM1, Prominin-1, humanhuman

Predictions only

Length 865 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PROM1O43490 MARK2-203ENST00000377810 4560 ntAPPRIS ALT2 TSL 5 BASIC18.25■□□□□ 0.51
PROM1O43490 LINC01465-201ENST00000408887 1940 ntBASIC18.25■□□□□ 0.51
PROM1O43490 C6orf89-203ENST00000373685 1400 ntAPPRIS ALT2 TSL 5 BASIC18.25■□□□□ 0.51
PROM1O43490 RBM45-201ENST00000286070 1785 ntAPPRIS P2 TSL 1 (best) BASIC18.25■□□□□ 0.51
PROM1O43490 RAX-202ENST00000334889 3197 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
PROM1O43490 CFAP77-203ENST00000393216 1638 ntAPPRIS ALT2 TSL 1 (best) BASIC18.25■□□□□ 0.51
PROM1O43490 CASTOR1-202ENST00000407689 1623 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
PROM1O43490 PEX16-210ENST00000532681 1639 ntTSL 3 BASIC18.25■□□□□ 0.51
PROM1O43490 PSEN1-203ENST00000394157 1249 ntTSL 2 BASIC18.25■□□□□ 0.51
PROM1O43490 TNFRSF18-204ENST00000486728 727 ntAPPRIS ALT2 TSL 1 (best) BASIC18.25■□□□□ 0.51
PROM1O43490 HGNC:18790-208ENST00000506380 798 ntAPPRIS P1 TSL 3 BASIC18.25■□□□□ 0.51
PROM1O43490 AC091564.5-201ENST00000526456 820 ntTSL 4 BASIC18.25■□□□□ 0.51
PROM1O43490 CAVIN3-203ENST00000530979 957 ntTSL 2 BASIC18.25■□□□□ 0.51
PROM1O43490 BX649632.1-201ENST00000610187 819 ntTSL 3 BASIC18.25■□□□□ 0.51
PROM1O43490 SLC6A7-203ENST00000524041 2431 ntTSL 5 BASIC18.25■□□□□ 0.51
PROM1O43490 SGO1-209ENST00000442720 2266 ntAPPRIS ALT2 TSL 1 (best) BASIC18.25■□□□□ 0.51
PROM1O43490 CYP2E1-205ENST00000463117 1912 ntAPPRIS P1 TSL 5 BASIC18.25■□□□□ 0.51
PROM1O43490 XYLT1-201ENST00000261381 9891 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
PROM1O43490 CHMP6-201ENST00000325167 1664 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
PROM1O43490 PRDM8-202ENST00000415738 3124 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
PROM1O43490 SPAST-203ENST00000615843 5212 ntAPPRIS P4 TSL 1 (best) BASIC18.25■□□□□ 0.51
PROM1O43490 ZFP69-202ENST00000372706 2871 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
PROM1O43490 PCID2-202ENST00000337344 1898 ntAPPRIS P1 TSL 2 BASIC18.24■□□□□ 0.51
PROM1O43490 EML3-217ENST00000531557 2509 ntTSL 5 BASIC18.24■□□□□ 0.51
PROM1O43490 SBNO2-201ENST00000361757 4923 ntAPPRIS P4 TSL 1 (best) BASIC18.24■□□□□ 0.51
PROM1O43490 CEP78-202ENST00000376597 2618 ntAPPRIS P4 TSL 1 (best) BASIC18.24■□□□□ 0.51
PROM1O43490 SCARF2-202ENST00000622235 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC18.24■□□□□ 0.51
PROM1O43490 FAM87B-201ENST00000326734 1947 ntTSL 2 BASIC18.24■□□□□ 0.51
PROM1O43490 CNOT6-201ENST00000261951 6176 ntAPPRIS P1 TSL 5 BASIC18.24■□□□□ 0.51
PROM1O43490 TINCR-201ENST00000448587 3733 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
PROM1O43490 MTHFD1L-201ENST00000367307 1049 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
PROM1O43490 ANKRD54-204ENST00000411961 946 ntTSL 5 BASIC18.24■□□□□ 0.51
PROM1O43490 RAB29-203ENST00000414729 1157 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
PROM1O43490 AL158047.1-201ENST00000445918 881 ntBASIC18.24■□□□□ 0.51
PROM1O43490 RARRES1-204ENST00000479756 839 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
PROM1O43490 ATP6V0E1-204ENST00000519911 718 ntTSL 2 BASIC18.24■□□□□ 0.51
PROM1O43490 RARRES2P10-201ENST00000564312 460 ntBASIC18.24■□□□□ 0.51
PROM1O43490 MRPL4-204ENST00000588502 827 ntTSL 2 BASIC18.24■□□□□ 0.51
PROM1O43490 AC011446.2-202ENST00000592882 756 ntTSL 3 BASIC18.24■□□□□ 0.51
PROM1O43490 AL158152.2-201ENST00000602703 235 ntTSL 3 BASIC18.24■□□□□ 0.51
PROM1O43490 AL353708.3-201ENST00000610272 989 ntBASIC18.24■□□□□ 0.51
PROM1O43490 FOXC1-201ENST00000380874 3926 ntAPPRIS P1 BASIC18.24■□□□□ 0.51
PROM1O43490 NAT6-204ENST00000443094 1464 ntAPPRIS ALT2 TSL 1 (best) BASIC18.24■□□□□ 0.51
PROM1O43490 FBXO27-207ENST00000600828 1557 ntAPPRIS ALT1 TSL 5 BASIC18.24■□□□□ 0.51
PROM1O43490 NRXN1-208ENST00000405472 5724 ntAPPRIS ALT2 TSL 5 BASIC18.24■□□□□ 0.51
PROM1O43490 MLF2-201ENST00000203630 1969 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
PROM1O43490 RAB11FIP5-201ENST00000258098 4342 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
PROM1O43490 TRPC1-203ENST00000476941 3061 ntAPPRIS ALT2 TSL 1 (best) BASIC18.24■□□□□ 0.51
PROM1O43490 GIT1-201ENST00000225394 3768 ntAPPRIS P3 TSL 1 (best) BASIC18.24■□□□□ 0.51
PROM1O43490 RPL7-202ENST00000396465 1308 ntTSL 3 BASIC18.23■□□□□ 0.51
PROM1O43490 P2RX3-204ENST00000616487 1346 ntTSL 5 BASIC18.23■□□□□ 0.51
PROM1O43490 AIRN-201ENST00000601203 4374 ntBASIC18.23■□□□□ 0.51
PROM1O43490 TUBA8-201ENST00000316027 1518 ntTSL 2 BASIC18.23■□□□□ 0.51
PROM1O43490 SLC22A18-202ENST00000347936 1542 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
PROM1O43490 SLC25A3-201ENST00000188376 1909 ntAPPRIS ALT1 TSL 1 (best) BASIC18.23■□□□□ 0.51
PROM1O43490 DBNL-219ENST00000490734 2004 ntTSL 2 BASIC18.23■□□□□ 0.51
PROM1O43490 CTBP2-202ENST00000334808 2130 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
PROM1O43490 UBE2Z-201ENST00000360943 3122 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
PROM1O43490 TMEM151A-201ENST00000327259 2562 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
PROM1O43490 KCNA3-201ENST00000369769 2569 ntAPPRIS P1 BASIC18.23■□□□□ 0.51
PROM1O43490 CYGB-201ENST00000293230 2158 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
PROM1O43490 TMEM230-206ENST00000379283 1660 ntAPPRIS P1 TSL 3 BASIC18.23■□□□□ 0.51
PROM1O43490 STARD10-213ENST00000538536 1678 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
PROM1O43490 ISOC2-203ENST00000438389 1566 ntTSL 2 BASIC18.23■□□□□ 0.51
PROM1O43490 UBE2Q2-204ENST00000561851 1582 ntTSL 2 BASIC18.23■□□□□ 0.51
PROM1O43490 MRPL15-201ENST00000260102 1147 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
PROM1O43490 CMTM8-201ENST00000307526 1174 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
PROM1O43490 PEX7-202ENST00000367756 680 ntTSL 3 BASIC18.23■□□□□ 0.51
PROM1O43490 PDCD2-202ENST00000392090 936 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
PROM1O43490 TSPAN4-209ENST00000409543 1031 ntAPPRIS P1 TSL 5 BASIC18.23■□□□□ 0.51
PROM1O43490 UBE2SP1-201ENST00000450587 669 ntBASIC18.23■□□□□ 0.51
PROM1O43490 CERNA3-201ENST00000521403 557 ntTSL 3 BASIC18.23■□□□□ 0.51
PROM1O43490 TMEM72-203ENST00000544540 1018 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
PROM1O43490 AL160286.2-201ENST00000567150 934 ntBASIC18.23■□□□□ 0.51
PROM1O43490 TPGS2-221ENST00000614939 1268 ntTSL 4 BASIC18.23■□□□□ 0.51
PROM1O43490 CROCCP4-202ENST00000633627 573 ntTSL 3 BASIC18.23■□□□□ 0.51
PROM1O43490 STRBP-201ENST00000348403 3337 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
PROM1O43490 FGFR2-208ENST00000360144 3001 ntTSL 2 BASIC18.23■□□□□ 0.51
PROM1O43490 EARS2-210ENST00000564501 2027 ntTSL 5 BASIC18.23■□□□□ 0.51
PROM1O43490 SPON2-203ENST00000431380 1802 ntAPPRIS P1 TSL 5 BASIC18.23■□□□□ 0.51
PROM1O43490 AL390860.1-201ENST00000449298 1541 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
PROM1O43490 ZNF582-207ENST00000619584 2297 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
PROM1O43490 ZNF843-203ENST00000618063 1765 ntAPPRIS P2 TSL 1 (best) BASIC18.22■□□□□ 0.51
PROM1O43490 CADPS-201ENST00000283269 4591 ntAPPRIS P4 TSL 1 (best) BASIC18.22■□□□□ 0.51
PROM1O43490 ADORA2A-214ENST00000611543 2412 ntAPPRIS P1 TSL 5 BASIC18.22■□□□□ 0.51
PROM1O43490 BRSK1-201ENST00000309383 3079 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
PROM1O43490 HNRNPLL-206ENST00000410076 1687 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
PROM1O43490 PRR14-203ENST00000542965 2316 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
PROM1O43490 FGFR2-204ENST00000356226 3547 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
PROM1O43490 NDUFA10-203ENST00000404554 1557 ntTSL 5 BASIC18.22■□□□□ 0.51
PROM1O43490 ITGB7-209ENST00000550743 2138 ntTSL 5 BASIC18.22■□□□□ 0.51
PROM1O43490 MRM3-201ENST00000304478 1809 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
PROM1O43490 PDLIM2-204ENST00000397760 1847 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
PROM1O43490 PTPRCAP-201ENST00000326294 1292 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
PROM1O43490 AL360181.5-201ENST00000368554 1044 ntAPPRIS P1 TSL 2 BASIC18.22■□□□□ 0.51
PROM1O43490 SEC61A2-206ENST00000379051 707 ntTSL 3 BASIC18.22■□□□□ 0.51
PROM1O43490 CCT7-202ENST00000398422 1234 ntTSL 2 BASIC18.22■□□□□ 0.51
PROM1O43490 DMRT2-206ENST00000412350 1244 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
PROM1O43490 NIFKP9-201ENST00000419265 221 ntBASIC18.22■□□□□ 0.51
PROM1O43490 PHYHD1-207ENST00000421063 1182 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 28.6 ms