Protein–RNA interactions for Protein: O75533

SF3B1, Splicing factor 3B subunit 1, humanhuman

Known RBP eCLIP

Length 1,304 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1O75533 DGKQ-203ENST00000509465 4362 ntAPPRIS ALT2 TSL 514.79□□□□□ -0.047e-8■■■■■ 137.9
SF3B1O75533 MAP3K3-203ENST00000577395 2016 ntAPPRIS ALT1 TSL 1 (best) BASIC14.79□□□□□ -0.042e-6■■■■■ 137.9
SF3B1O75533 GCN1-206ENST00000549815 543 ntTSL 314.78□□□□□ -0.043e-6■■■■■ 137.9
SF3B1O75533 STKLD1-203ENST00000468046 785 ntTSL 314.78□□□□□ -0.043e-6■■■■■ 137.9
SF3B1O75533 INF2-209ENST00000617571 2956 ntTSL 1 (best) BASIC14.78□□□□□ -0.043e-6■■■■■ 137.9
SF3B1O75533 FUK-201ENST00000288078 4081 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.043e-6■■■■■ 137.9
SF3B1O75533 SHF-210ENST00000561239 603 ntTSL 314.76□□□□□ -0.053e-6■■■■■ 137.9
SF3B1O75533 DDR1-271ENST00000513240 2882 ntAPPRIS ALT2 TSL 5 BASIC14.75□□□□□ -0.053e-6■■■■■ 137.9
SF3B1O75533 PKMYT1-217ENST00000575040 605 ntTSL 314.75□□□□□ -0.053e-6■■■■■ 137.9
SF3B1O75533 ABCD4-212ENST00000484380 1823 ntTSL 314.75□□□□□ -0.053e-6■■■■■ 137.9
SF3B1O75533 CHIC1-204ENST00000498407 967 ntTSL 514.74□□□□□ -0.053e-6■■■■■ 137.9
SF3B1O75533 RTEL1-206ENST00000425905 664 ntTSL 214.74□□□□□ -0.053e-6■■■■■ 137.9
SF3B1O75533 CLIP2-203ENST00000395060 3141 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.053e-6■■■■■ 137.9
SF3B1O75533 CRYBG1-204ENST00000633556 9909 ntAPPRIS ALT2 TSL 5 BASIC14.72□□□□□ -0.053e-6■■■■■ 137.9
SF3B1O75533 AP4M1-204ENST00000421755 1572 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.053e-6■■■■■ 137.9
SF3B1O75533 CRYBG2-201ENST00000308182 5245 ntAPPRIS P5 TSL 5 BASIC14.71□□□□□ -0.052e-11■■■■■ 137.9
SF3B1O75533 C2orf82-204ENST00000448993 357 ntAPPRIS ALT2 TSL 514.71□□□□□ -0.053e-6■■■■■ 137.9
SF3B1O75533 CENPT-216ENST00000565114 633 ntTSL 414.71□□□□□ -0.053e-6■■■■■ 137.9
SF3B1O75533 PHACTR2-202ENST00000367582 4367 ntAPPRIS ALT2 TSL 1 (best) BASIC14.71□□□□□ -0.053e-6■■■■■ 137.9
SF3B1O75533 ZBTB20-215ENST00000481632 2800 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.053e-6■■■■■ 137.9
SF3B1O75533 MPV17-216ENST00000494436 590 ntTSL 214.7□□□□□ -0.063e-6■■■■■ 137.9
SF3B1O75533 CEP250-203ENST00000420564 702 ntTSL 514.7□□□□□ -0.063e-6■■■■■ 137.9
SF3B1O75533 AC090004.1-201ENST00000608606 653 ntAPPRIS P1 TSL 5 BASIC14.69□□□□□ -0.063e-6■■■■■ 137.9
SF3B1O75533 FAM3A-213ENST00000440318 441 ntTSL 514.69□□□□□ -0.063e-6■■■■■ 137.9
SF3B1O75533 TUBB3-208ENST00000555576 572 ntTSL 4 BASIC14.69□□□□□ -0.063e-6■■■■■ 137.9
SF3B1O75533 PALD1-201ENST00000263563 4555 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.063e-6■■■■■ 137.9
SF3B1O75533 KDM1B-201ENST00000297792 3811 ntAPPRIS P1 TSL 2 BASIC14.68□□□□□ -0.063e-6■■■■■ 137.9
SF3B1O75533 TCF3-209ENST00000586410 288 ntTSL 514.67□□□□□ -0.063e-6■■■■■ 137.9
SF3B1O75533 XYLB-204ENST00000472721 546 ntTSL 414.66□□□□□ -0.063e-6■■■■■ 137.9
SF3B1O75533 SNX30-201ENST00000374232 7622 ntAPPRIS P1 TSL 5 BASIC14.66□□□□□ -0.063e-6■■■■■ 137.9
SF3B1O75533 ABI2-205ENST00000376135 568 ntTSL 314.65□□□□□ -0.063e-6■■■■■ 137.9
SF3B1O75533 LMAN2L-202ENST00000377079 2020 ntAPPRIS ALT2 TSL 1 (best) BASIC14.64□□□□□ -0.073e-6■■■■■ 137.9
SF3B1O75533 TSPAN32-208ENST00000461200 3325 ntTSL 214.64□□□□□ -0.073e-6■■■■■ 137.9
SF3B1O75533 DNAJC27-201ENST00000264711 4992 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.073e-6■■■■■ 137.9
SF3B1O75533 MTG2-201ENST00000370823 2929 ntAPPRIS P1 TSL 5 BASIC14.62□□□□□ -0.073e-6■■■■■ 137.9
SF3B1O75533 UBE2E2-202ENST00000396703 2748 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.073e-6■■■■■ 137.9
SF3B1O75533 TMEM9B-202ENST00000525069 1433 ntTSL 2 BASIC14.6□□□□□ -0.073e-6■■■■■ 137.9
SF3B1O75533 MTG2-206ENST00000467101 2814 ntTSL 1 (best)14.6□□□□□ -0.073e-6■■■■■ 137.9
SF3B1O75533 ST20-AS1-201ENST00000560255 4223 ntBASIC14.6□□□□□ -0.073e-6■■■■■ 137.9
SF3B1O75533 GLB1L2-204ENST00000533324 582 ntTSL 314.6□□□□□ -0.073e-6■■■■■ 137.9
SF3B1O75533 GALE-204ENST00000429356 957 ntTSL 514.59□□□□□ -0.073e-6■■■■■ 137.9
SF3B1O75533 DNAJC27-204ENST00000468750 463 ntTSL 314.58□□□□□ -0.083e-6■■■■■ 137.9
SF3B1O75533 SNCG-203ENST00000465679 641 ntTSL 214.57□□□□□ -0.083e-6■■■■■ 137.9
SF3B1O75533 VRK3-201ENST00000316763 1938 ntAPPRIS P3 TSL 1 (best) BASIC14.56□□□□□ -0.083e-6■■■■■ 137.9
SF3B1O75533 RIOK1-202ENST00000379834 2810 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.083e-6■■■■■ 137.9
SF3B1O75533 RTEL1-203ENST00000360203 4623 ntAPPRIS P1 TSL 5 BASIC14.54□□□□□ -0.083e-6■■■■■ 137.9
SF3B1O75533 SNRNP200-204ENST00000480615 1646 ntTSL 514.53□□□□□ -0.083e-6■■■■■ 137.9
SF3B1O75533 INF2-203ENST00000392634 4672 ntAPPRIS P3 TSL 5 BASIC14.53□□□□□ -0.083e-6■■■■■ 137.9
SF3B1O75533 SIMC1-205ENST00000443967 3572 ntAPPRIS ALT2 TSL 1 (best) BASIC14.53□□□□□ -0.083e-6■■■■■ 137.9
SF3B1O75533 NXN-212ENST00000577098 659 ntTSL 314.53□□□□□ -0.083e-6■■■■■ 137.9
SF3B1O75533 FSCN3-204ENST00000478328 705 ntTSL 1 (best)14.53□□□□□ -0.083e-6■■■■■ 137.9
SF3B1O75533 TFAM-202ENST00000373899 1121 ntTSL 214.53□□□□□ -0.083e-6■■■■■ 137.9
SF3B1O75533 HGS-211ENST00000573949 461 ntTSL 514.52□□□□□ -0.083e-6■■■■■ 137.9
SF3B1O75533 FAHD2B-201ENST00000272610 1305 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.093e-6■■■■■ 137.9
SF3B1O75533 KDM8-203ENST00000562269 779 ntTSL 314.51□□□□□ -0.093e-6■■■■■ 137.9
SF3B1O75533 RHOH-206ENST00000505618 1225 ntAPPRIS P1 TSL 4 BASIC14.51□□□□□ -0.093e-6■■■■■ 137.9
SF3B1O75533 COL20A1-206ENST00000479501 4536 ntTSL 1 (best)14.51□□□□□ -0.093e-6■■■■■ 137.9
SF3B1O75533 DNAJC7-208ENST00000587380 1956 nt14.49□□□□□ -0.093e-6■■■■■ 137.9
SF3B1O75533 C12orf76-201ENST00000309050 1964 ntTSL 2 BASIC14.48□□□□□ -0.093e-6■■■■■ 137.9
SF3B1O75533 ABI2-213ENST00000424558 2240 ntTSL 2 BASIC14.47□□□□□ -0.093e-6■■■■■ 137.9
SF3B1O75533 INVS-201ENST00000262456 2968 ntTSL 5 BASIC14.47□□□□□ -0.093e-6■■■■■ 137.9
SF3B1O75533 REC8-213ENST00000620473 2405 ntAPPRIS P1 TSL 2 BASIC14.46□□□□□ -0.093e-6■■■■■ 137.9
SF3B1O75533 AP1M1-214ENST00000591966 542 ntTSL 414.46□□□□□ -0.093e-6■■■■■ 137.9
SF3B1O75533 CEP70-201ENST00000264982 2732 ntAPPRIS P3 TSL 1 (best) BASIC14.46□□□□□ -0.093e-6■■■■■ 137.9
SF3B1O75533 TRAPPC4-202ENST00000434101 794 ntTSL 2 BASIC14.45□□□□□ -0.13e-6■■■■■ 137.9
SF3B1O75533 ANXA6-203ENST00000517486 562 ntTSL 514.44□□□□□ -0.13e-6■■■■■ 137.9
SF3B1O75533 OSBP2-219ENST00000535268 3248 ntTSL 2 BASIC14.44□□□□□ -0.13e-6■■■■■ 137.9
SF3B1O75533 NAPEPLD-201ENST00000341533 4972 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.13e-6■■■■■ 137.9
SF3B1O75533 RFC5-206ENST00000484086 631 ntTSL 414.42□□□□□ -0.13e-6■■■■■ 137.9
SF3B1O75533 TSC22D3-204ENST00000372384 2199 ntTSL 2 BASIC14.42□□□□□ -0.13e-6■■■■■ 137.9
SF3B1O75533 INF2-201ENST00000252527 3050 ntTSL 214.42□□□□□ -0.13e-6■■■■■ 137.9
SF3B1O75533 KDM8-212ENST00000568965 1655 ntTSL 1 (best) BASIC14.42□□□□□ -0.13e-6■■■■■ 137.9
SF3B1O75533 CENPT-211ENST00000564128 2673 ntTSL 214.42□□□□□ -0.13e-6■■■■■ 137.9
SF3B1O75533 ZBTB20-209ENST00000470311 587 ntTSL 414.41□□□□□ -0.13e-6■■■■■ 137.9
SF3B1O75533 WDR76-204ENST00000478130 1172 ntTSL 314.39□□□□□ -0.113e-6■■■■■ 137.9
SF3B1O75533 LMBR1L-216ENST00000550867 2800 ntTSL 1 (best)14.38□□□□□ -0.113e-6■■■■■ 137.9
SF3B1O75533 SNCA-204ENST00000394989 3167 ntTSL 1 (best) BASIC14.38□□□□□ -0.113e-6■■■■■ 137.9
SF3B1O75533 ABCB8-206ENST00000466956 574 ntTSL 414.38□□□□□ -0.113e-6■■■■■ 137.9
SF3B1O75533 ESPN-201ENST00000377828 3531 ntAPPRIS P2 TSL 1 (best) BASIC14.36□□□□□ -0.111e-16■■■■■ 137.9
SF3B1O75533 NUMB-225ENST00000557031 567 ntTSL 414.35□□□□□ -0.112e-6■■■■■ 137.9
SF3B1O75533 JMJD7-PLA2G4B-205ENST00000490848 7218 ntTSL 214.34□□□□□ -0.115e-6■■■■■ 137.9
SF3B1O75533 RHOH-224ENST00000622175 2254 ntAPPRIS P1 TSL 4 BASIC14.33□□□□□ -0.113e-6■■■■■ 137.9
SF3B1O75533 TUBB2A-201ENST00000333628 1595 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.113e-6■■■■■ 137.9
SF3B1O75533 ATG9B-203ENST00000469530 3489 ntAPPRIS P1 TSL 5 BASIC14.33□□□□□ -0.123e-6■■■■■ 137.9
SF3B1O75533 SMYD4-206ENST00000573937 746 ntTSL 314.32□□□□□ -0.123e-6■■■■■ 137.9
SF3B1O75533 HAUS7-210ENST00000491286 851 ntTSL 314.32□□□□□ -0.123e-6■■■■■ 137.9
SF3B1O75533 TRAPPC4-214ENST00000533632 1759 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.123e-6■■■■■ 137.9
SF3B1O75533 FUK-203ENST00000464499 4439 ntTSL 214.3□□□□□ -0.123e-6■■■■■ 137.9
SF3B1O75533 CALM3-213ENST00000602169 590 ntTSL 214.29□□□□□ -0.123e-6■■■■■ 137.9
SF3B1O75533 GGCX-206ENST00000465637 563 ntTSL 414.29□□□□□ -0.123e-6■■■■■ 137.9
SF3B1O75533 VRK3-203ENST00000424804 1061 ntTSL 214.28□□□□□ -0.123e-6■■■■■ 137.9
SF3B1O75533 GOT2-207ENST00000568368 516 ntTSL 414.28□□□□□ -0.123e-6■■■■■ 137.9
SF3B1O75533 HPS1-211ENST00000478087 971 ntTSL 514.26□□□□□ -0.133e-6■■■■■ 137.9
SF3B1O75533 HPS1-203ENST00000359632 978 ntTSL 314.26□□□□□ -0.133e-6■■■■■ 137.9
SF3B1O75533 CENPT-220ENST00000565436 557 ntTSL 414.26□□□□□ -0.133e-6■■■■■ 137.9
SF3B1O75533 HGSNAT-208ENST00000522082 560 ntTSL 414.25□□□□□ -0.133e-6■■■■■ 137.9
SF3B1O75533 MAP3K3-204ENST00000577597 2024 ntTSL 1 (best)14.23□□□□□ -0.132e-6■■■■■ 137.9
SF3B1O75533 ALAD-201ENST00000409155 3173 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.133e-6■■■■■ 137.9
SF3B1O75533 AGBL2-205ENST00000528244 2929 ntAPPRIS ALT2 TSL 2 BASIC14.22□□□□□ -0.133e-6■■■■■ 137.9
SF3B1O75533 ALDH16A1-207ENST00000599652 3995 ntTSL 214.2□□□□□ -0.143e-6■■■■■ 137.9
Retrieved 100 of 46,956 protein–RNA pairs in 1763.7 ms