RNA–Protein interactions for RNA: ENST00000479501.5

COL20A1-206, Transcript of collagen type XX alpha 1 chain, humanhuman

TSL 1 (best)

Gene COL20A1, Length 4,536 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL20A1-206ENST00000479501 NISCHQ9Y2I1 1504 aa26.28■■□□□ 1.8
COL20A1-206ENST00000479501 DCAF8L2P0C7V8 631 aa25.18■■□□□ 1.62
COL20A1-206ENST00000479501 SUPT5HO00267 1087 aaKnown RBP24.31■■□□□ 1.48
COL20A1-206ENST00000479501 SHROOM4Q9ULL8 1493 aa24.21■■□□□ 1.47
COL20A1-206ENST00000479501 EHMT2Q96KQ7 1210 aa22.98■■□□□ 1.27
COL20A1-206ENST00000479501 FAM9AQ8IZU1 332 aaPredicted RBP22.75■■□□□ 1.23
COL20A1-206ENST00000479501 PCGF6Q9BYE7 350 aa22.59■■□□□ 1.21
COL20A1-206ENST00000479501 TRIM41Q8WV44 630 aa22.58■■□□□ 1.21
COL20A1-206ENST00000479501 APLP2Q06481 763 aa22.32■■□□□ 1.16
COL20A1-206ENST00000479501 CHIC1Q5VXU3 224 aa22.32■■□□□ 1.16
COL20A1-206ENST00000479501 TTBK1Q5TCY1 1321 aaPredicted RBP22.19■■□□□ 1.14
COL20A1-206ENST00000479501 PELP1Q8IZL8 1130 aaKnown RBP22.18■■□□□ 1.14
COL20A1-206ENST00000479501 LOC105371045A0A1W2PR82 267 aa22.03■■□□□ 1.12
COL20A1-206ENST00000479501 UBTFP17480 764 aaKnown RBP22.03■■□□□ 1.12
COL20A1-206ENST00000479501 ZEB1P37275 1124 aaPredicted RBP21.99■■□□□ 1.11
COL20A1-206ENST00000479501 RANGAP1P46060 587 aaPredicted RBP21.99■■□□□ 1.11
COL20A1-206ENST00000479501 ABCC9O60706 1549 aa21.98■■□□□ 1.11
COL20A1-206ENST00000479501 ZCCHC6Q5VYS8 1495 aaKnown RBP21.89■■□□□ 1.1
COL20A1-206ENST00000479501 TRIM26Q12899 539 aaPredicted RBP21.87■■□□□ 1.09
COL20A1-206ENST00000479501 CCER1Q8TC90 406 aaPredicted RBP21.87■■□□□ 1.09
COL20A1-206ENST00000479501 PPARGC1BQ86YN6 1023 aaKnown RBP21.8■■□□□ 1.08
COL20A1-206ENST00000479501 HRCP23327 699 aa21.75■■□□□ 1.07
COL20A1-206ENST00000479501 CENPBP07199 599 aaPredicted RBP21.73■■□□□ 1.07
COL20A1-206ENST00000479501 CCDC180Q9P1Z9 1646 aa21.72■■□□□ 1.07
COL20A1-206ENST00000479501 PABPN1Q86U42 306 aaKnown RBP eCLIP21.6■■□□□ 1.05
COL20A1-206ENST00000479501 ATP1B4Q9UN42 357 aaPredicted RBP21.6■■□□□ 1.05
COL20A1-206ENST00000479501 MYT1Q01538 1121 aa21.57■■□□□ 1.04
COL20A1-206ENST00000479501 SCRIBQ14160 1630 aa21.37■■□□□ 1.01
COL20A1-206ENST00000479501 ERICH6Q7L0X2 663 aa21.27■■□□□ 1
COL20A1-206ENST00000479501 HNRNPUL2Q1KMD3 747 aaKnown RBP21.24■□□□□ 0.99
COL20A1-206ENST00000479501 YTHDC1Q96MU7 727 aaKnown RBP21.18■□□□□ 0.98
COL20A1-206ENST00000479501 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP21.16■□□□□ 0.98
COL20A1-206ENST00000479501 ITGAEP38570 1179 aa21.15■□□□□ 0.98
COL20A1-206ENST00000479501 CSRNP3Q8WYN3 585 aa21.05■□□□□ 0.96
COL20A1-206ENST00000479501 RSF1Q96T23 1441 aaPredicted RBP21■□□□□ 0.95
COL20A1-206ENST00000479501 DCAF1Q9Y4B6 1507 aa20.99■□□□□ 0.95
COL20A1-206ENST00000479501 NEFLP07196 543 aa20.95■□□□□ 0.94
COL20A1-206ENST00000479501 MYO15BQ96JP2 1530 aa20.9■□□□□ 0.94
COL20A1-206ENST00000479501 NACADO15069 1562 aa20.86■□□□□ 0.93
COL20A1-206ENST00000479501 RB1CC1Q8TDY2 1594 aa20.85■□□□□ 0.93
COL20A1-206ENST00000479501 DIEXFQ68CQ4 756 aaKnown RBP20.82■□□□□ 0.92
COL20A1-206ENST00000479501 FAM50AQ14320 339 aaKnown RBP20.74■□□□□ 0.91
COL20A1-206ENST00000479501 CECR2Q9BXF3 1484 aa20.62■□□□□ 0.89
COL20A1-206ENST00000479501 P3H3Q8IVL6 736 aa20.56■□□□□ 0.88
COL20A1-206ENST00000479501 ZNF316A6NFI3 1004 aaPredicted RBP20.51■□□□□ 0.87
COL20A1-206ENST00000479501 NEUROD1Q13562 356 aa20.51■□□□□ 0.87
COL20A1-206ENST00000479501 BAZ1AQ9NRL2 1556 aaPredicted RBP20.51■□□□□ 0.87
COL20A1-206ENST00000479501 POLR3GLQ9BT43 218 aa20.47■□□□□ 0.87
COL20A1-206ENST00000479501 TRIM52Q96A61 297 aa20.45■□□□□ 0.86
COL20A1-206ENST00000479501 EEA1Q15075 1411 aa20.44■□□□□ 0.86
COL20A1-206ENST00000479501 GTF3C3Q9Y5Q9 886 aa20.42■□□□□ 0.86
COL20A1-206ENST00000479501 MYT1LQ9UL68 1186 aa20.41■□□□□ 0.86
COL20A1-206ENST00000479501 WRNQ14191 1432 aaPredicted RBP eCLIP20.41■□□□□ 0.86
COL20A1-206ENST00000479501 MROH2BQ7Z745 1585 aa20.39■□□□□ 0.85
COL20A1-206ENST00000479501 CLIP1P30622 1438 aa20.37■□□□□ 0.85
COL20A1-206ENST00000479501 FBLN2P98095 1184 aa20.36■□□□□ 0.85
COL20A1-206ENST00000479501 BAZ1BQ9UIG0 1483 aaKnown RBP20.36■□□□□ 0.85
COL20A1-206ENST00000479501 CEP162Q5TB80 1403 aa20.36■□□□□ 0.85
COL20A1-206ENST00000479501 CNGB1Q14028 1251 aaPredicted RBP20.32■□□□□ 0.84
COL20A1-206ENST00000479501 GOLGA3Q08378 1498 aa20.32■□□□□ 0.84
COL20A1-206ENST00000479501 TNIKQ9UKE5 1360 aa20.28■□□□□ 0.84
COL20A1-206ENST00000479501 ARID3CA6NKF2 412 aa20.28■□□□□ 0.84
COL20A1-206ENST00000479501 DAXXQ9UER7 740 aaPredicted RBP20.19■□□□□ 0.82
COL20A1-206ENST00000479501 ACIN1Q9UKV3 1341 aaKnown RBP20.18■□□□□ 0.82
COL20A1-206ENST00000479501 CCDC88BA6NC98 1476 aa20.18■□□□□ 0.82
COL20A1-206ENST00000479501 CEP164Q9UPV0 1460 aa20.17■□□□□ 0.82
COL20A1-206ENST00000479501 ANP32CO43423 234 aa20.17■□□□□ 0.82
COL20A1-206ENST00000479501 SOGA1O94964 1423 aa20.15■□□□□ 0.82
COL20A1-206ENST00000479501 CDK11AQ9UQ88 783 aaPredicted RBP20.13■□□□□ 0.81
COL20A1-206ENST00000479501 KIF27Q86VH2 1401 aa20.11■□□□□ 0.81
COL20A1-206ENST00000479501 ZNF326Q5BKZ1 582 aaKnown RBP20.1■□□□□ 0.81
COL20A1-206ENST00000479501 WIZO95785 1651 aa20.09■□□□□ 0.81
COL20A1-206ENST00000479501 RTL5Q5HYW3 569 aaPredicted RBP20.07■□□□□ 0.8
COL20A1-206ENST00000479501 ZNF777Q9ULD5 760 aaPredicted RBP20.05■□□□□ 0.8
COL20A1-206ENST00000479501 ABCC8Q09428 1581 aa20.05■□□□□ 0.8
COL20A1-206ENST00000479501 BCANQ96GW7 911 aa20.03■□□□□ 0.8
COL20A1-206ENST00000479501 MTUS2Q5JR59 1369 aa20.01■□□□□ 0.79
COL20A1-206ENST00000479501 TONSLQ96HA7 1378 aa20■□□□□ 0.79
COL20A1-206ENST00000479501 TOP2AP11388 1531 aaKnown RBP19.99■□□□□ 0.79
COL20A1-206ENST00000479501 CHIC2Q9UKJ5 165 aa19.95■□□□□ 0.78
COL20A1-206ENST00000479501 SMARCA2P51531 1590 aa19.93■□□□□ 0.78
COL20A1-206ENST00000479501 DDX10Q13206 875 aaKnown RBP19.91■□□□□ 0.78
COL20A1-206ENST00000479501 SLC4A1APQ9BWU0 796 aaKnown RBP19.88■□□□□ 0.77
COL20A1-206ENST00000479501 MIER1Q8N108 512 aa19.86■□□□□ 0.77
COL20A1-206ENST00000479501 CHMP7Q8WUX9 453 aaPredicted RBP19.84■□□□□ 0.77
COL20A1-206ENST00000479501 SMARCA4P51532 1647 aa19.84■□□□□ 0.77
COL20A1-206ENST00000479501 CUX2O14529 1486 aa19.82■□□□□ 0.76
COL20A1-206ENST00000479501 CARMIL1Q5VZK9 1371 aa19.82■□□□□ 0.76
COL20A1-206ENST00000479501 VPS8Q8N3P4 1428 aa19.81■□□□□ 0.76
COL20A1-206ENST00000479501 ATAD2BQ9ULI0 1458 aa19.79■□□□□ 0.76
COL20A1-206ENST00000479501 SCAF1Q9H7N4 1312 aaKnown RBP19.77■□□□□ 0.76
COL20A1-206ENST00000479501 RRP7BPQ9NSQ0 103 aa19.76■□□□□ 0.75
COL20A1-206ENST00000479501 CLSPNQ9HAW4 1339 aa19.72■□□□□ 0.75
COL20A1-206ENST00000479501 CCNB3Q8WWL7 1395 aa19.72■□□□□ 0.75
COL20A1-206ENST00000479501 TSPY4P0CV99 314 aa19.71■□□□□ 0.75
COL20A1-206ENST00000479501 TSPY10P0CW01 314 aa19.71■□□□□ 0.75
COL20A1-206ENST00000479501 HIRIP3Q9BW71 556 aaPredicted RBP19.71■□□□□ 0.75
COL20A1-206ENST00000479501 FHAD1B1AJZ9 1412 aa19.7■□□□□ 0.74
COL20A1-206ENST00000479501 KANK4Q5T7N3 995 aaPredicted RBP19.68■□□□□ 0.74
COL20A1-206ENST00000479501 RUSC2Q8N2Y8 1516 aa19.66■□□□□ 0.74
Retrieved 100 of 20,778 RNA–protein pairs in 65.9 ms