Protein–RNA interactions for Protein: P29074

PTPN4, Tyrosine-protein phosphatase non-receptor type 4, humanhuman

Predictions only

Length 926 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4P29074 ST8SIA1-204ENST00000404299 1920 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
PTPN4P29074 WDR74-202ENST00000311713 1153 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
PTPN4P29074 PDCD10-202ENST00000461494 934 ntAPPRIS P1 TSL 3 BASIC19.34■□□□□ 0.69
PTPN4P29074 FAM213B-215ENST00000537325 1096 ntAPPRIS ALT2 TSL 2 BASIC19.34■□□□□ 0.69
PTPN4P29074 PNMA6B-201ENST00000538162 1200 ntBASIC19.34■□□□□ 0.69
PTPN4P29074 FFAR3-202ENST00000594310 1182 ntAPPRIS P1 BASIC19.34■□□□□ 0.69
PTPN4P29074 AC008403.3-201ENST00000598924 454 ntBASIC19.34■□□□□ 0.69
PTPN4P29074 AL390961.4-201ENST00000623958 2535 ntBASIC19.34■□□□□ 0.69
PTPN4P29074 PSMD8-201ENST00000215071 1553 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
PTPN4P29074 HOXA4-202ENST00000428284 1595 ntAPPRIS P1 TSL 2 BASIC19.34■□□□□ 0.69
PTPN4P29074 PRSS23-201ENST00000280258 4015 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
PTPN4P29074 BLACE-201ENST00000378120 2456 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
PTPN4P29074 PKN1-201ENST00000242783 3069 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
PTPN4P29074 ADORA2A-213ENST00000610595 2736 ntAPPRIS P1 TSL 2 BASIC19.34■□□□□ 0.69
PTPN4P29074 ITGB5-201ENST00000296181 4372 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
PTPN4P29074 EEF1A2-201ENST00000217182 2006 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
PTPN4P29074 CELF6-202ENST00000395258 1741 ntTSL 5 BASIC19.34■□□□□ 0.69
PTPN4P29074 TRIM7-205ENST00000422067 1954 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
PTPN4P29074 TUSC2-201ENST00000232496 1691 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
PTPN4P29074 GTF2IP1-210ENST00000622829 3605 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
PTPN4P29074 MTDH-203ENST00000519934 2184 ntTSL 5 BASIC19.33■□□□□ 0.69
PTPN4P29074 UBE2I-203ENST00000397514 2976 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
PTPN4P29074 LONP1-215ENST00000593119 2918 ntTSL 2 BASIC19.33■□□□□ 0.69
PTPN4P29074 AC092368.3-202ENST00000574180 1591 ntBASIC19.33■□□□□ 0.69
PTPN4P29074 EMX2-203ENST00000553456 2897 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
PTPN4P29074 SLC5A10-203ENST00000395645 2069 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
PTPN4P29074 ZNF302-206ENST00000505242 2849 ntAPPRIS P3 TSL 1 (best) BASIC19.33■□□□□ 0.69
PTPN4P29074 TMEM243-201ENST00000257637 1063 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
PTPN4P29074 TMEM35B-201ENST00000373337 922 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
PTPN4P29074 SLC35A2-202ENST00000376512 903 ntTSL 2 BASIC19.33■□□□□ 0.68
PTPN4P29074 MAGI2-AS3-202ENST00000422093 762 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
PTPN4P29074 CAVIN3-203ENST00000530979 957 ntTSL 2 BASIC19.33■□□□□ 0.68
PTPN4P29074 FBXO6-201ENST00000376753 1520 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
PTPN4P29074 TSSC4-203ENST00000380996 1544 ntAPPRIS ALT2 TSL 1 (best) BASIC19.33■□□□□ 0.68
PTPN4P29074 PNPO-201ENST00000225573 2256 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
PTPN4P29074 RAB1A-204ENST00000409892 2254 ntTSL 2 BASIC19.33■□□□□ 0.68
PTPN4P29074 COQ10B-201ENST00000263960 2239 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
PTPN4P29074 AC013268.5-201ENST00000454928 1959 ntTSL 2 BASIC19.33■□□□□ 0.68
PTPN4P29074 ENTPD8-204ENST00000472938 1749 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
PTPN4P29074 MAST1-208ENST00000591495 1496 ntTSL 5 BASIC19.33■□□□□ 0.68
PTPN4P29074 TFEB-203ENST00000358871 2188 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
PTPN4P29074 ST3GAL5-202ENST00000377332 2165 ntTSL 5 BASIC19.33■□□□□ 0.68
PTPN4P29074 AKT1S1-207ENST00000391835 3075 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
PTPN4P29074 CHRND-201ENST00000258385 2112 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
PTPN4P29074 WNT8B-201ENST00000343737 2112 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
PTPN4P29074 MOB3C-202ENST00000319928 2822 ntAPPRIS P1 TSL 2 BASIC19.33■□□□□ 0.68
PTPN4P29074 TFCP2-204ENST00000548115 1862 ntTSL 5 BASIC19.33■□□□□ 0.68
PTPN4P29074 SHF-201ENST00000290894 2500 ntAPPRIS P3 TSL 2 BASIC19.32■□□□□ 0.68
PTPN4P29074 ESR1-210ENST00000456483 1368 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
PTPN4P29074 TRMT2A-203ENST00000404751 2498 ntAPPRIS ALT2 TSL 2 BASIC19.32■□□□□ 0.68
PTPN4P29074 PGLYRP2-202ENST00000340880 2230 ntAPPRIS P2 TSL 1 (best) BASIC19.32■□□□□ 0.68
PTPN4P29074 MPZ-206ENST00000533357 1955 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
PTPN4P29074 WAC-202ENST00000347934 2839 ntTSL 5 BASIC19.32■□□□□ 0.68
PTPN4P29074 ADAD1-202ENST00000388724 1912 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
PTPN4P29074 C15orf48-201ENST00000344300 875 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
PTPN4P29074 MFF-205ENST00000354503 1085 ntTSL 2 BASIC19.32■□□□□ 0.68
PTPN4P29074 NMRK1-201ENST00000361092 1185 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
PTPN4P29074 MTHFD1L-201ENST00000367307 1049 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
PTPN4P29074 GCC2-AS1-202ENST00000440975 574 ntTSL 4 BASIC19.32■□□□□ 0.68
PTPN4P29074 NDUFB2-203ENST00000461457 559 ntTSL 3 BASIC19.32■□□□□ 0.68
PTPN4P29074 TNIK-208ENST00000465393 750 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
PTPN4P29074 UNC93B4-201ENST00000505679 747 ntBASIC19.32■□□□□ 0.68
PTPN4P29074 RPS23-206ENST00000510210 1058 ntTSL 2 BASIC19.32■□□□□ 0.68
PTPN4P29074 TMEM9B-203ENST00000528117 949 ntTSL 2 BASIC19.32■□□□□ 0.68
PTPN4P29074 AC113189.1-201ENST00000570444 327 ntTSL 3 BASIC19.32■□□□□ 0.68
PTPN4P29074 SNX11-201ENST00000359238 2315 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
PTPN4P29074 GORASP1-206ENST00000422110 2523 ntTSL 2 BASIC19.32■□□□□ 0.68
PTPN4P29074 NOP14-204ENST00000502735 2723 ntAPPRIS ALT2 TSL 5 BASIC19.32■□□□□ 0.68
PTPN4P29074 RALGPS1-204ENST00000373436 1667 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
PTPN4P29074 TACC3-213ENST00000617535 1693 ntTSL 5 BASIC19.32■□□□□ 0.68
PTPN4P29074 NFATC2IP-201ENST00000320805 4569 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
PTPN4P29074 KLHL23-201ENST00000272797 2087 ntAPPRIS P1 TSL 2 BASIC19.32■□□□□ 0.68
PTPN4P29074 ZNF385A-202ENST00000352268 2076 ntTSL 2 BASIC19.32■□□□□ 0.68
PTPN4P29074 PIGQ-206ENST00000422307 2052 ntTSL 3 BASIC19.32■□□□□ 0.68
PTPN4P29074 PDE8A-202ENST00000339708 2663 ntAPPRIS ALT2 TSL 1 (best) BASIC19.32■□□□□ 0.68
PTPN4P29074 ASB18-201ENST00000409749 1401 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
PTPN4P29074 EWSR1-207ENST00000406548 2207 ntAPPRIS ALT2 TSL 1 (best) BASIC19.32■□□□□ 0.68
PTPN4P29074 AC009113.1-201ENST00000570267 2443 ntBASIC19.32■□□□□ 0.68
PTPN4P29074 AC104581.1-202ENST00000635932 2618 ntBASIC19.32■□□□□ 0.68
PTPN4P29074 DCLK2-207ENST00000635524 2153 ntAPPRIS ALT2 TSL 5 BASIC19.32■□□□□ 0.68
PTPN4P29074 AC011416.4-201ENST00000639283 2195 ntTSL 5 BASIC19.32■□□□□ 0.68
PTPN4P29074 FDXR-204ENST00000442102 1967 ntTSL 2 BASIC19.32■□□□□ 0.68
PTPN4P29074 ERCC2-203ENST00000391944 2334 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
PTPN4P29074 HERPUD2-202ENST00000396081 3057 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
PTPN4P29074 FENDRR-203ENST00000595886 3095 ntTSL 2 BASIC19.31■□□□□ 0.68
PTPN4P29074 ZNF821-211ENST00000564134 1748 ntTSL 5 BASIC19.31■□□□□ 0.68
PTPN4P29074 SCRN2-201ENST00000290216 1548 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
PTPN4P29074 WISP2-202ENST00000372865 1518 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
PTPN4P29074 PQLC2-203ENST00000400548 1548 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
PTPN4P29074 CENPS-CORT-204ENST00000602296 1326 ntTSL 3 BASIC19.31■□□□□ 0.68
PTPN4P29074 SMARCC2-203ENST00000394023 4271 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
PTPN4P29074 LEF1-203ENST00000438313 1488 ntAPPRIS ALT1 TSL 1 (best) BASIC19.31■□□□□ 0.68
PTPN4P29074 PHF12-202ENST00000332830 4759 ntAPPRIS P1 TSL 2 BASIC19.31■□□□□ 0.68
PTPN4P29074 PTPMT1-202ENST00000326674 768 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
PTPN4P29074 PUSL1-201ENST00000379031 1287 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
PTPN4P29074 MDK-205ENST00000405308 1166 ntAPPRIS P2 TSL 2 BASIC19.31■□□□□ 0.68
PTPN4P29074 ZNRF2P2-202ENST00000442865 590 ntTSL 4 BASIC19.31■□□□□ 0.68
PTPN4P29074 FAM131A-208ENST00000453072 1038 ntTSL 2 BASIC19.31■□□□□ 0.68
PTPN4P29074 AC226101.2-201ENST00000458252 747 ntTSL 2 BASIC19.31■□□□□ 0.68
PTPN4P29074 LINC00304-202ENST00000562248 1095 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 39.5 ms