Protein–RNA interactions for Protein: O75533

SF3B1, Splicing factor 3B subunit 1, humanhuman

Known RBP eCLIP

Length 1,304 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1O75533 ALG1L13P-204ENST00000523017 765 ntTSL 5 BASIC15.32■□□□□ 0.043e-6■■■■■ 137.9
SF3B1O75533 AC135782.2-201ENST00000562040 472 ntTSL 3 BASIC15.31■□□□□ 0.043e-6■■■■■ 137.9
SF3B1O75533 DCTN1-221ENST00000491465 2444 ntTSL 1 (best)15.3■□□□□ 0.043e-6■■■■■ 137.9
SF3B1O75533 SUMF2-219ENST00000531229 737 ntTSL 215.29■□□□□ 0.043e-6■■■■■ 137.9
SF3B1O75533 WDR33-205ENST00000436787 822 ntTSL 515.29■□□□□ 0.043e-6■■■■■ 137.9
SF3B1O75533 RSPRY1-202ENST00000537866 3586 ntAPPRIS P1 TSL 2 BASIC15.29■□□□□ 0.043e-6■■■■■ 137.9
SF3B1O75533 SAMD4B-202ENST00000594204 626 ntTSL 315.27■□□□□ 0.043e-6■■■■■ 137.9
SF3B1O75533 SLC41A2-206ENST00000432951 564 ntTSL 415.25■□□□□ 0.033e-6■■■■■ 137.9
SF3B1O75533 ELMO2-205ENST00000425546 1344 ntTSL 215.25■□□□□ 0.033e-6■■■■■ 137.9
SF3B1O75533 ALDH4A1-206ENST00000538839 2957 ntTSL 1 (best) BASIC15.24■□□□□ 0.033e-6■■■■■ 137.9
SF3B1O75533 PDE1B-206ENST00000550285 2209 ntTSL 215.24■□□□□ 0.033e-6■■■■■ 137.9
SF3B1O75533 ACVR2A-205ENST00000487959 274 ntTSL 415.23■□□□□ 0.033e-6■■■■■ 137.9
SF3B1O75533 CERCAM-205ENST00000420512 887 ntTSL 315.23■□□□□ 0.033e-6■■■■■ 137.9
SF3B1O75533 AP4M1-208ENST00000439416 921 ntTSL 515.23■□□□□ 0.033e-6■■■■■ 137.9
SF3B1O75533 NUP188-206ENST00000485158 392 ntTSL 215.23■□□□□ 0.033e-6■■■■■ 137.9
SF3B1O75533 EML2-210ENST00000587484 219 ntTSL 315.23■□□□□ 0.032e-11■■■■■ 137.9
SF3B1O75533 GPD1L-201ENST00000282541 4060 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.033e-6■■■■■ 137.9
SF3B1O75533 KIF1A-201ENST00000320389 8832 ntAPPRIS P1 TSL 5 BASIC15.21■□□□□ 0.033e-6■■■■■ 137.9
SF3B1O75533 SEPT9-212ENST00000586128 752 ntTSL 415.21■□□□□ 0.033e-6■■■■■ 137.9
SF3B1O75533 CAMTA2-207ENST00000572326 437 ntTSL 315.21■□□□□ 0.033e-6■■■■■ 137.9
SF3B1O75533 VARS2-201ENST00000321897 4073 ntTSL 1 (best) BASIC15.21■□□□□ 0.035e-6■■■■■ 137.9
SF3B1O75533 CHN2-201ENST00000222792 3530 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.023e-6■■■■■ 137.9
SF3B1O75533 FBXO15-209ENST00000581214 1590 ntTSL 515.2■□□□□ 0.023e-6■■■■■ 137.9
SF3B1O75533 SEMA4B-209ENST00000559247 850 ntTSL 215.19■□□□□ 0.023e-6■■■■■ 137.9
SF3B1O75533 PKNOX1-209ENST00000560448 1429 ntTSL 515.19■□□□□ 0.023e-6■■■■■ 137.9
SF3B1O75533 TRIM3-212ENST00000533064 1654 ntTSL 1 (best)15.18■□□□□ 0.023e-6■■■■■ 137.9
SF3B1O75533 SH3TC1-206ENST00000502669 3484 ntTSL 1 (best)15.17■□□□□ 0.023e-6■■■■■ 137.9
SF3B1O75533 EPAS1-201ENST00000263734 5166 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.023e-6■■■■■ 137.9
SF3B1O75533 GOT2-205ENST00000496461 981 ntTSL 215.17■□□□□ 0.023e-6■■■■■ 137.9
SF3B1O75533 ATG9B-209ENST00000605952 4572 ntTSL 1 (best)15.16■□□□□ 0.023e-6■■■■■ 137.9
SF3B1O75533 COQ3-203ENST00000479163 686 ntTSL 215.16■□□□□ 0.023e-6■■■■■ 137.9
SF3B1O75533 CAVIN1-201ENST00000357037 3828 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.023e-6■■■■■ 137.9
SF3B1O75533 CCNDBP1-201ENST00000300213 3660 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.022e-11■■■■■ 137.9
SF3B1O75533 MTG2-202ENST00000448254 727 ntTSL 515.15■□□□□ 0.023e-6■■■■■ 137.9
SF3B1O75533 TMCO1-205ENST00000476143 581 ntTSL 315.14■□□□□ 0.013e-6■■■■■ 137.9
SF3B1O75533 PNPLA7-203ENST00000434090 2419 ntTSL 515.13■□□□□ 0.013e-6■■■■■ 137.9
SF3B1O75533 HPS1-209ENST00000470095 801 ntTSL 515.13■□□□□ 0.013e-6■■■■■ 137.9
SF3B1O75533 FSCN3-205ENST00000478821 725 ntTSL 515.13■□□□□ 0.013e-6■■■■■ 137.9
SF3B1O75533 AXIN1-203ENST00000457798 334 ntTSL 315.13■□□□□ 0.013e-6■■■■■ 137.9
SF3B1O75533 NUMB-215ENST00000555307 1039 ntTSL 515.12■□□□□ 0.012e-6■■■■■ 137.9
SF3B1O75533 VARS2-211ENST00000541562 3566 ntTSL 2 BASIC15.11■□□□□ 0.015e-6■■■■■ 137.9
SF3B1O75533 BID-210ENST00000552886 330 ntTSL 315.1■□□□□ 0.013e-6■■■■■ 137.9
SF3B1O75533 FAM160A2-202ENST00000449352 3354 ntAPPRIS ALT1 TSL 1 (best) BASIC15.1■□□□□ 0.013e-6■■■■■ 137.9
SF3B1O75533 ABCB8-217ENST00000488826 562 ntTSL 315.09■□□□□ 0.013e-6■■■■■ 137.9
SF3B1O75533 DHRS4-AS1-204ENST00000555045 1848 ntTSL 1 (best) BASIC15.09■□□□□ 0.013e-6■■■■■ 137.9
SF3B1O75533 ELP4-228ENST00000640954 1612 ntTSL 5 BASIC15.06■□□□□ 03e-6■■■■■ 137.9
SF3B1O75533 TMEM202-AS1-201ENST00000562573 723 ntTSL 3 BASIC15.06■□□□□ 03e-6■■■■■ 137.9
SF3B1O75533 CEP250-201ENST00000397524 1419 ntTSL 5 BASIC15.06■□□□□ 03e-6■■■■■ 137.9
SF3B1O75533 SPARC-203ENST00000521327 864 ntTSL 215.03■□□□□ -03e-6■■■■■ 137.9
SF3B1O75533 GEMIN7-202ENST00000391951 716 ntAPPRIS P1 TSL 2 BASIC15.03■□□□□ -03e-6■■■■■ 137.9
SF3B1O75533 BARD1-202ENST00000421162 766 ntTSL 315.03■□□□□ -03e-6■■■■■ 137.9
SF3B1O75533 ALAD-206ENST00000468504 851 ntTSL 515.02■□□□□ -03e-6■■■■■ 137.9
SF3B1O75533 STX18-AS1-207ENST00000610009 2406 ntTSL 1 (best) BASIC15.02□□□□□ -0.013e-6■■■■■ 137.9
SF3B1O75533 RTEL1-205ENST00000370018 4955 ntTSL 1 (best) BASIC15.01□□□□□ -0.013e-6■■■■■ 137.9
SF3B1O75533 FUBP3-205ENST00000487406 840 ntTSL 515□□□□□ -0.017e-22■■■■■ 137.9
SF3B1O75533 ABCD4-217ENST00000496015 1248 ntTSL 515□□□□□ -0.013e-6■■■■■ 137.9
SF3B1O75533 SLC2A13-201ENST00000280871 7003 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.013e-6■■■■■ 137.9
SF3B1O75533 PHB-210ENST00000511832 1509 ntTSL 2 BASIC15□□□□□ -0.013e-6■■■■■ 137.9
SF3B1O75533 RTEL1-201ENST00000318100 4676 ntTSL 2 BASIC15□□□□□ -0.013e-6■■■■■ 137.9
SF3B1O75533 NUMB-209ENST00000554315 1740 ntTSL 1 (best)14.99□□□□□ -0.012e-6■■■■■ 137.9
SF3B1O75533 CHTF18-212ENST00000493715 691 ntTSL 314.99□□□□□ -0.013e-6■■■■■ 137.9
SF3B1O75533 PRKACA-204ENST00000587372 824 ntTSL 314.99□□□□□ -0.013e-6■■■■■ 137.9
SF3B1O75533 TUBB3-202ENST00000553656 550 ntTSL 414.99□□□□□ -0.013e-6■■■■■ 137.9
SF3B1O75533 PPIA-210ENST00000620047 827 ntTSL 5 BASIC14.99□□□□□ -0.013e-6■■■■■ 137.9
SF3B1O75533 PPIA-208ENST00000489459 907 ntTSL 2 BASIC14.99□□□□□ -0.013e-6■■■■■ 137.9
SF3B1O75533 PPIH-205ENST00000440068 669 ntTSL 514.99□□□□□ -0.013e-6■■■■■ 137.9
SF3B1O75533 PPIA-201ENST00000355968 818 ntTSL 1 (best) BASIC14.99□□□□□ -0.013e-6■■■■■ 137.9
SF3B1O75533 AC004890.2-205ENST00000416232 2804 ntTSL 2 BASIC14.98□□□□□ -0.013e-6■■■■■ 137.9
SF3B1O75533 ACAD8-201ENST00000281182 2249 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.013e-6■■■■■ 137.9
SF3B1O75533 ALG13-210ENST00000471924 711 ntTSL 314.97□□□□□ -0.013e-6■■■■■ 137.9
SF3B1O75533 SIL1-207ENST00000505830 496 ntTSL 214.97□□□□□ -0.013e-6■■■■■ 137.9
SF3B1O75533 SRD5A3-201ENST00000264228 4190 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.013e-6■■■■■ 137.9
SF3B1O75533 ATL2-210ENST00000452935 2199 ntTSL 2 BASIC14.97□□□□□ -0.012e-11■■■■■ 137.9
SF3B1O75533 CCNDBP1-206ENST00000565296 1831 ntTSL 214.96□□□□□ -0.012e-11■■■■■ 137.9
SF3B1O75533 FAM92A-202ENST00000423990 914 ntTSL 5 BASIC14.95□□□□□ -0.023e-6■■■■■ 137.9
SF3B1O75533 PLAUR-210ENST00000597107 842 ntTSL 514.95□□□□□ -0.023e-6■■■■■ 137.9
SF3B1O75533 FAM92A-203ENST00000452913 1284 ntTSL 514.95□□□□□ -0.023e-6■■■■■ 137.9
SF3B1O75533 SETD1B-203ENST00000604567 5969 ntAPPRIS ALT2 TSL 5 BASIC14.95□□□□□ -0.023e-6■■■■■ 137.9
SF3B1O75533 C12orf76-207ENST00000549724 1302 ntTSL 5 BASIC14.94□□□□□ -0.023e-6■■■■■ 137.9
SF3B1O75533 GPAT4-201ENST00000396987 6298 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.023e-6■■■■■ 137.9
SF3B1O75533 WDR33-201ENST00000322313 9471 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.023e-6■■■■■ 137.9
SF3B1O75533 PLEKHO2-202ENST00000616065 3569 ntTSL 1 (best) BASIC14.93□□□□□ -0.023e-6■■■■■ 137.9
SF3B1O75533 AFG3L1P-205ENST00000421780 526 ntTSL 1 (best)14.92□□□□□ -0.023e-6■■■■■ 137.9
SF3B1O75533 AFG3L1P-206ENST00000423684 595 ntTSL 1 (best)14.92□□□□□ -0.023e-6■■■■■ 137.9
SF3B1O75533 MIATNB-209ENST00000450963 658 ntTSL 514.92□□□□□ -0.023e-6■■■■■ 137.9
SF3B1O75533 LMAN2L-201ENST00000264963 2397 ntAPPRIS P3 TSL 1 (best) BASIC14.91□□□□□ -0.023e-6■■■■■ 137.9
SF3B1O75533 EMP3-208ENST00000599255 667 ntTSL 314.91□□□□□ -0.023e-6■■■■■ 137.9
SF3B1O75533 VRK3-217ENST00000599538 2126 ntAPPRIS P3 TSL 1 (best) BASIC14.9□□□□□ -0.023e-6■■■■■ 137.9
SF3B1O75533 PLEKHO2-201ENST00000323544 3720 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.033e-6■■■■■ 137.9
SF3B1O75533 NUMB-216ENST00000555394 3037 ntAPPRIS ALT1 TSL 1 (best) BASIC14.88□□□□□ -0.032e-6■■■■■ 137.9
SF3B1O75533 ABCB8-203ENST00000461373 537 ntTSL 414.87□□□□□ -0.033e-6■■■■■ 137.9
SF3B1O75533 ZNF664-202ENST00000392404 4262 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.033e-6■■■■■ 137.9
SF3B1O75533 ZNF664-204ENST00000538932 4321 ntAPPRIS P1 TSL 3 BASIC14.84□□□□□ -0.033e-6■■■■■ 137.9
SF3B1O75533 ABI2-219ENST00000444584 563 ntTSL 514.84□□□□□ -0.033e-6■■■■■ 137.9
SF3B1O75533 SLC35C2-206ENST00000424568 731 ntTSL 214.84□□□□□ -0.032e-11■■■■■ 137.9
SF3B1O75533 NOP56-210ENST00000470143 663 ntTSL 214.81□□□□□ -0.043e-6■■■■■ 137.9
SF3B1O75533 BID-209ENST00000551952 700 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.043e-6■■■■■ 137.9
SF3B1O75533 FUK-202ENST00000378912 3925 ntTSL 2 BASIC14.79□□□□□ -0.043e-6■■■■■ 137.9
SF3B1O75533 RTN4R-206ENST00000474642 559 ntTSL 414.79□□□□□ -0.043e-6■■■■■ 137.9
SF3B1O75533 MPP7-207ENST00000481244 843 ntTSL 514.79□□□□□ -0.043e-6■■■■■ 137.9
Retrieved 100 of 46,956 protein–RNA pairs in 1383.3 ms