Protein–RNA interactions for Protein: H3BT56

CHKB-CPT1B, CHKB-CPT1B readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 60 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHKB-CPT1BH3BT56 PIF1-205ENST00000559239 2677 ntAPPRIS P1 TSL 1 (best) BASIC10.75□□□□□ -0.69
CHKB-CPT1BH3BT56 ANKRD13B-209ENST00000614878 2670 ntAPPRIS P1 TSL 5 BASIC10.75□□□□□ -0.69
CHKB-CPT1BH3BT56 FAM69B-202ENST00000371692 1668 ntAPPRIS P1 TSL 1 (best) BASIC10.75□□□□□ -0.69
CHKB-CPT1BH3BT56 ERF-202ENST00000440177 2032 ntTSL 2 BASIC10.75□□□□□ -0.69
CHKB-CPT1BH3BT56 AC006460.2-201ENST00000638173 4744 ntTSL 5 BASIC10.75□□□□□ -0.69
CHKB-CPT1BH3BT56 SHISA5-220ENST00000619810 2385 ntTSL 2 BASIC10.75□□□□□ -0.69
CHKB-CPT1BH3BT56 AJAP1-202ENST00000378191 11666 ntAPPRIS P1 TSL 1 (best) BASIC10.75□□□□□ -0.69
CHKB-CPT1BH3BT56 OSCAR-208ENST00000611261 2061 ntAPPRIS P4 TSL 5 BASIC10.75□□□□□ -0.69
CHKB-CPT1BH3BT56 RBM17-201ENST00000379888 2755 ntAPPRIS P1 TSL 1 (best) BASIC10.75□□□□□ -0.69
CHKB-CPT1BH3BT56 VEGFA-205ENST00000372067 3535 ntAPPRIS ALT2 TSL 1 (best) BASIC10.75□□□□□ -0.69
CHKB-CPT1BH3BT56 MAPK8IP1-202ENST00000395629 3180 ntTSL 5 BASIC10.75□□□□□ -0.69
CHKB-CPT1BH3BT56 NFATC2-202ENST00000396009 7437 ntAPPRIS P3 TSL 1 (best) BASIC10.75□□□□□ -0.69
CHKB-CPT1BH3BT56 SPNS3-201ENST00000355530 2133 ntAPPRIS P1 TSL 2 BASIC10.75□□□□□ -0.69
CHKB-CPT1BH3BT56 SHISA8-202ENST00000621082 1405 ntAPPRIS P2 TSL 5 BASIC10.75□□□□□ -0.69
CHKB-CPT1BH3BT56 ACOX1-201ENST00000293217 7514 ntAPPRIS P5 TSL 1 (best) BASIC10.75□□□□□ -0.69
CHKB-CPT1BH3BT56 MYLK-202ENST00000354792 7531 ntAPPRIS ALT2 TSL 5 BASIC10.75□□□□□ -0.69
CHKB-CPT1BH3BT56 KIF1BP-201ENST00000361983 2544 ntAPPRIS P1 TSL 1 (best) BASIC10.75□□□□□ -0.69
CHKB-CPT1BH3BT56 NARF-202ENST00000345415 1487 ntTSL 1 (best) BASIC10.74□□□□□ -0.69
CHKB-CPT1BH3BT56 TNFRSF1A-201ENST00000162749 2223 ntAPPRIS P1 TSL 1 (best) BASIC10.74□□□□□ -0.69
CHKB-CPT1BH3BT56 TTLL12-201ENST00000216129 3385 ntAPPRIS P1 TSL 1 (best) BASIC10.74□□□□□ -0.69
CHKB-CPT1BH3BT56 ZBTB22-207ENST00000418724 2645 ntAPPRIS P1 TSL 1 (best) BASIC10.74□□□□□ -0.69
CHKB-CPT1BH3BT56 RHOF-201ENST00000267205 3009 ntAPPRIS P1 TSL 1 (best) BASIC10.74□□□□□ -0.69
CHKB-CPT1BH3BT56 MAPK9-202ENST00000347470 1509 ntTSL 5 BASIC10.74□□□□□ -0.69
CHKB-CPT1BH3BT56 PDE8A-202ENST00000339708 2663 ntAPPRIS ALT2 TSL 1 (best) BASIC10.74□□□□□ -0.69
CHKB-CPT1BH3BT56 AP1AR-202ENST00000309703 2337 ntAPPRIS ALT1 TSL 1 (best) BASIC10.74□□□□□ -0.69
CHKB-CPT1BH3BT56 PIGW-204ENST00000614443 2312 ntAPPRIS P1 TSL 1 (best) BASIC10.74□□□□□ -0.69
CHKB-CPT1BH3BT56 SCARB1-203ENST00000415380 2731 ntTSL 2 BASIC10.74□□□□□ -0.69
CHKB-CPT1BH3BT56 REV3L-207ENST00000435970 10943 ntTSL 2 BASIC10.74□□□□□ -0.69
CHKB-CPT1BH3BT56 SNPH-201ENST00000381867 5533 ntAPPRIS ALT2 TSL 1 (best) BASIC10.74□□□□□ -0.69
CHKB-CPT1BH3BT56 SNAP47-201ENST00000315781 2367 ntAPPRIS P3 TSL 1 (best) BASIC10.74□□□□□ -0.69
CHKB-CPT1BH3BT56 CLCN6-201ENST00000312413 5631 ntTSL 2 BASIC10.74□□□□□ -0.69
CHKB-CPT1BH3BT56 PIANP-204ENST00000540656 2432 ntAPPRIS P3 TSL 2 BASIC10.74□□□□□ -0.69
CHKB-CPT1BH3BT56 AC005332.7-201ENST00000614046 2005 ntBASIC10.74□□□□□ -0.69
CHKB-CPT1BH3BT56 HNRNPM-217ENST00000620401 2458 ntAPPRIS ALT2 TSL 1 (best) BASIC10.74□□□□□ -0.69
CHKB-CPT1BH3BT56 RBM7-201ENST00000375490 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC10.74□□□□□ -0.69
CHKB-CPT1BH3BT56 KCNN2-207ENST00000610748 2091 ntTSL 3 BASIC10.74□□□□□ -0.69
CHKB-CPT1BH3BT56 TAF10-201ENST00000299424 1215 ntAPPRIS P1 TSL 1 (best) BASIC10.74□□□□□ -0.69
CHKB-CPT1BH3BT56 YARS2-201ENST00000324868 2122 ntAPPRIS P1 TSL 1 (best) BASIC10.74□□□□□ -0.69
CHKB-CPT1BH3BT56 NKIRAS2-208ENST00000462043 585 ntTSL 4 BASIC10.74□□□□□ -0.69
CHKB-CPT1BH3BT56 AL157400.5-201ENST00000507624 621 ntBASIC10.74□□□□□ -0.69
CHKB-CPT1BH3BT56 MPP5-205ENST00000556345 1163 ntTSL 2 BASIC10.74□□□□□ -0.69
CHKB-CPT1BH3BT56 REEP2-202ENST00000378339 2170 ntAPPRIS ALT1 TSL 1 (best) BASIC10.74□□□□□ -0.69
CHKB-CPT1BH3BT56 TECPR1-204ENST00000447648 6564 ntAPPRIS P1 TSL 1 (best) BASIC10.74□□□□□ -0.69
CHKB-CPT1BH3BT56 PGAP3-206ENST00000579146 2220 ntTSL 2 BASIC10.74□□□□□ -0.69
CHKB-CPT1BH3BT56 SPIN3-224ENST00000639583 2245 ntTSL 5 BASIC10.74□□□□□ -0.69
CHKB-CPT1BH3BT56 AC022916.1-201ENST00000590478 2658 ntTSL 2 BASIC10.74□□□□□ -0.69
CHKB-CPT1BH3BT56 CYP2U1-202ENST00000508453 3125 ntTSL 1 (best) BASIC10.74□□□□□ -0.69
CHKB-CPT1BH3BT56 SPTBN2-209ENST00000533211 8128 ntAPPRIS P1 TSL 5 BASIC10.74□□□□□ -0.69
CHKB-CPT1BH3BT56 FPGS-201ENST00000373225 2278 ntTSL 2 BASIC10.74□□□□□ -0.69
CHKB-CPT1BH3BT56 USP43-201ENST00000285199 4169 ntAPPRIS P3 TSL 1 (best) BASIC10.74□□□□□ -0.69
CHKB-CPT1BH3BT56 CCDC184-201ENST00000316554 2343 ntAPPRIS P1 BASIC10.74□□□□□ -0.69
CHKB-CPT1BH3BT56 VRK2-201ENST00000340157 1888 ntAPPRIS P3 TSL 1 (best) BASIC10.74□□□□□ -0.69
CHKB-CPT1BH3BT56 ARNTL2-209ENST00000546179 1861 ntAPPRIS ALT2 TSL 2 BASIC10.74□□□□□ -0.69
CHKB-CPT1BH3BT56 CFP-202ENST00000377005 1435 ntAPPRIS ALT2 TSL 1 (best) BASIC10.74□□□□□ -0.69
CHKB-CPT1BH3BT56 KCNG3-201ENST00000306078 3824 ntAPPRIS P3 TSL 1 (best) BASIC10.74□□□□□ -0.69
CHKB-CPT1BH3BT56 ZNF746-201ENST00000340622 3806 ntAPPRIS P3 TSL 1 (best) BASIC10.74□□□□□ -0.69
CHKB-CPT1BH3BT56 MITF-204ENST00000352241 4814 ntAPPRIS ALT1 TSL 1 (best) BASIC10.74□□□□□ -0.69
CHKB-CPT1BH3BT56 MAP4K2-202ENST00000377350 2931 ntTSL 1 (best) BASIC10.74□□□□□ -0.69
CHKB-CPT1BH3BT56 DNAJC27-201ENST00000264711 4992 ntAPPRIS P1 TSL 1 (best) BASIC10.74□□□□□ -0.69
CHKB-CPT1BH3BT56 DKFZP434A062-201ENST00000573103 5021 ntBASIC10.74□□□□□ -0.69
CHKB-CPT1BH3BT56 EPS8-201ENST00000281172 4061 ntAPPRIS P1 TSL 1 (best) BASIC10.74□□□□□ -0.69
CHKB-CPT1BH3BT56 DKC1-201ENST00000369550 2577 ntAPPRIS P3 TSL 1 (best) BASIC10.73□□□□□ -0.69
CHKB-CPT1BH3BT56 CEBPE-201ENST00000206513 1554 ntAPPRIS P1 TSL 1 (best) BASIC10.73□□□□□ -0.69
CHKB-CPT1BH3BT56 CEP78-204ENST00000415759 2623 ntAPPRIS ALT2 TSL 5 BASIC10.73□□□□□ -0.69
CHKB-CPT1BH3BT56 U73166.1-201ENST00000439898 2625 ntTSL 1 (best) BASIC10.73□□□□□ -0.69
CHKB-CPT1BH3BT56 CDK12-201ENST00000430627 5918 ntAPPRIS ALT1 TSL 1 (best) BASIC10.73□□□□□ -0.69
CHKB-CPT1BH3BT56 BOC-212ENST00000485230 2173 ntTSL 2 BASIC10.73□□□□□ -0.69
CHKB-CPT1BH3BT56 ZNF584-209ENST00000599238 2288 ntTSL 1 (best) BASIC10.73□□□□□ -0.69
CHKB-CPT1BH3BT56 CHL1-201ENST00000256509 8023 ntAPPRIS P1 TSL 1 (best) BASIC10.73□□□□□ -0.69
CHKB-CPT1BH3BT56 PTGDR-201ENST00000306051 2942 ntAPPRIS P1 TSL 1 (best) BASIC10.73□□□□□ -0.69
CHKB-CPT1BH3BT56 ST14-201ENST00000278742 3539 ntAPPRIS P1 TSL 1 (best) BASIC10.73□□□□□ -0.69
CHKB-CPT1BH3BT56 MFF-202ENST00000337110 1760 ntTSL 1 (best) BASIC10.73□□□□□ -0.69
CHKB-CPT1BH3BT56 PPP1R26-202ENST00000401470 4769 ntAPPRIS P1 TSL 5 BASIC10.73□□□□□ -0.69
CHKB-CPT1BH3BT56 CRTC1-201ENST00000321949 2501 ntAPPRIS P3 TSL 1 (best) BASIC10.73□□□□□ -0.69
CHKB-CPT1BH3BT56 MOB2-207ENST00000614710 705 ntTSL 5 BASIC10.73□□□□□ -0.69
CHKB-CPT1BH3BT56 TSLP-203ENST00000420978 2621 ntAPPRIS ALT2 TSL 1 (best) BASIC10.73□□□□□ -0.69
CHKB-CPT1BH3BT56 FOXN3-214ENST00000557258 2692 ntAPPRIS P3 TSL 1 (best) BASIC10.73□□□□□ -0.69
CHKB-CPT1BH3BT56 RNF165-204ENST00000587853 2011 ntTSL 5 BASIC10.73□□□□□ -0.69
CHKB-CPT1BH3BT56 MSRB1-206ENST00000622125 1363 ntAPPRIS ALT1 TSL 5 BASIC10.73□□□□□ -0.69
CHKB-CPT1BH3BT56 SLC5A10-203ENST00000395645 2069 ntAPPRIS P1 TSL 1 (best) BASIC10.73□□□□□ -0.69
CHKB-CPT1BH3BT56 AL096870.2-201ENST00000565988 2108 ntTSL 1 (best) BASIC10.73□□□□□ -0.69
CHKB-CPT1BH3BT56 SF1-203ENST00000377387 2947 ntAPPRIS ALT2 TSL 1 (best) BASIC10.73□□□□□ -0.69
CHKB-CPT1BH3BT56 AUH-201ENST00000303617 1490 ntTSL 1 (best) BASIC10.73□□□□□ -0.69
CHKB-CPT1BH3BT56 CDK5RAP2-202ENST00000360190 5985 ntAPPRIS ALT2 TSL 1 (best) BASIC10.73□□□□□ -0.69
CHKB-CPT1BH3BT56 FBXO24-201ENST00000241071 2276 ntAPPRIS P1 TSL 1 (best) BASIC10.73□□□□□ -0.69
CHKB-CPT1BH3BT56 PRR5-203ENST00000403581 2279 ntTSL 2 BASIC10.73□□□□□ -0.69
CHKB-CPT1BH3BT56 AC068880.1-201ENST00000507289 2297 ntBASIC10.73□□□□□ -0.69
CHKB-CPT1BH3BT56 RAPGEF3-205ENST00000449771 6061 ntAPPRIS ALT2 TSL 2 BASIC10.73□□□□□ -0.69
CHKB-CPT1BH3BT56 MFSD3-201ENST00000301327 1548 ntAPPRIS P1 TSL 1 (best) BASIC10.73□□□□□ -0.69
CHKB-CPT1BH3BT56 SPTBN2-201ENST00000309996 7866 ntAPPRIS P1 TSL 1 (best) BASIC10.73□□□□□ -0.69
CHKB-CPT1BH3BT56 AP004607.7-201ENST00000527152 1677 ntBASIC10.73□□□□□ -0.69
CHKB-CPT1BH3BT56 MAMSTR-203ENST00000594582 1693 ntTSL 1 (best) BASIC10.73□□□□□ -0.69
CHKB-CPT1BH3BT56 KCNK17-202ENST00000453413 1706 ntAPPRIS ALT2 TSL 5 BASIC10.72□□□□□ -0.69
CHKB-CPT1BH3BT56 UMODL1-206ENST00000408989 5262 ntAPPRIS P4 TSL 1 (best) BASIC10.72□□□□□ -0.69
CHKB-CPT1BH3BT56 ACVR1B-203ENST00000426655 1782 ntTSL 2 BASIC10.72□□□□□ -0.69
CHKB-CPT1BH3BT56 TMEM51-203ENST00000400796 1842 ntAPPRIS P1 TSL 1 (best) BASIC10.72□□□□□ -0.69
CHKB-CPT1BH3BT56 AC007225.1-201ENST00000566331 1836 ntBASIC10.72□□□□□ -0.69
CHKB-CPT1BH3BT56 ABR-205ENST00000544583 5595 ntTSL 2 BASIC10.72□□□□□ -0.69
CHKB-CPT1BH3BT56 LYPD1-202ENST00000397463 1891 ntAPPRIS P1 TSL 1 (best) BASIC10.72□□□□□ -0.69
CHKB-CPT1BH3BT56 PDZD3-203ENST00000525131 1882 ntTSL 2 BASIC10.72□□□□□ -0.69
Retrieved 100 of 98,524 protein–RNA pairs in 46.9 ms