Protein–RNA interactions for Protein: Q9Y6N9

USH1C, Harmonin, humanhuman

Predictions only

Length 552 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USH1CQ9Y6N9 AP001160.5-201ENST00000636508 485 ntAPPRIS P1 BASIC19.25■□□□□ 0.67
USH1CQ9Y6N9 CPEB3-203ENST00000614585 5789 ntAPPRIS P3 TSL 5 BASIC19.25■□□□□ 0.67
USH1CQ9Y6N9 RNF121-201ENST00000361756 2625 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
USH1CQ9Y6N9 FZD10-201ENST00000229030 3281 ntAPPRIS P1 BASIC19.25■□□□□ 0.67
USH1CQ9Y6N9 TRAF3-203ENST00000392745 2459 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
USH1CQ9Y6N9 CNNM3-201ENST00000305510 3447 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
USH1CQ9Y6N9 ANKRD2-202ENST00000307518 1449 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
USH1CQ9Y6N9 KRT8P20-201ENST00000423953 1409 ntBASIC19.25■□□□□ 0.67
USH1CQ9Y6N9 PEX11G-203ENST00000593942 1345 ntTSL 5 BASIC19.25■□□□□ 0.67
USH1CQ9Y6N9 SHE-201ENST00000304760 6243 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
USH1CQ9Y6N9 PCID2-202ENST00000337344 1898 ntAPPRIS P1 TSL 2 BASIC19.24■□□□□ 0.67
USH1CQ9Y6N9 TLE4-205ENST00000376544 4871 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
USH1CQ9Y6N9 SPAST-202ENST00000345662 5116 ntAPPRIS ALT1 TSL 1 (best) BASIC19.24■□□□□ 0.67
USH1CQ9Y6N9 CD55-203ENST00000367063 1691 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
USH1CQ9Y6N9 NR4A2-204ENST00000409572 2878 ntAPPRIS P1 TSL 5 BASIC19.24■□□□□ 0.67
USH1CQ9Y6N9 ASB7-203ENST00000558747 2133 ntTSL 5 BASIC19.24■□□□□ 0.67
USH1CQ9Y6N9 C15orf56-202ENST00000623360 2129 ntTSL 2 BASIC19.24■□□□□ 0.67
USH1CQ9Y6N9 ENOPH1-201ENST00000273920 2025 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
USH1CQ9Y6N9 MAN2A1-201ENST00000261483 4667 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
USH1CQ9Y6N9 GUCY1A2-201ENST00000282249 3047 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
USH1CQ9Y6N9 MAPKAP1-205ENST00000373503 3045 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
USH1CQ9Y6N9 PPP2R2C-209ENST00000515571 1832 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
USH1CQ9Y6N9 KRTAP5-2-201ENST00000412090 1118 ntAPPRIS P1 BASIC19.24■□□□□ 0.67
USH1CQ9Y6N9 FAM187A-202ENST00000412523 1748 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
USH1CQ9Y6N9 SLC47A1-202ENST00000395585 1998 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
USH1CQ9Y6N9 ZNF696-201ENST00000330143 2795 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
USH1CQ9Y6N9 NAPRT-203ENST00000435154 1877 ntTSL 2 BASIC19.24■□□□□ 0.67
USH1CQ9Y6N9 SYTL1-210ENST00000616558 1878 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
USH1CQ9Y6N9 SPNS3-201ENST00000355530 2133 ntAPPRIS P1 TSL 2 BASIC19.24■□□□□ 0.67
USH1CQ9Y6N9 KBTBD11-201ENST00000320248 6710 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
USH1CQ9Y6N9 SOWAHC-201ENST00000356454 4657 ntAPPRIS P1 BASIC19.24■□□□□ 0.67
USH1CQ9Y6N9 NOMO2-212ENST00000622306 4252 ntAPPRIS P3 TSL 1 (best) BASIC19.23■□□□□ 0.67
USH1CQ9Y6N9 FBXW11-202ENST00000296933 4539 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
USH1CQ9Y6N9 CARD9-202ENST00000371734 1814 ntTSL 5 BASIC19.23■□□□□ 0.67
USH1CQ9Y6N9 FARSA-207ENST00000588025 2057 ntTSL 5 BASIC19.23■□□□□ 0.67
USH1CQ9Y6N9 YPEL5-205ENST00000402708 1735 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
USH1CQ9Y6N9 TMEM8A-201ENST00000250930 2346 ntAPPRIS ALT2 TSL 2 BASIC19.23■□□□□ 0.67
USH1CQ9Y6N9 ZDHHC8P1-204ENST00000433168 2309 ntTSL 2 BASIC19.23■□□□□ 0.67
USH1CQ9Y6N9 BEND4-201ENST00000502486 8765 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
USH1CQ9Y6N9 FGFR3-205ENST00000440486 4287 ntAPPRIS P3 TSL 5 BASIC19.23■□□□□ 0.67
USH1CQ9Y6N9 RSPO4-201ENST00000217260 2707 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
USH1CQ9Y6N9 GPATCH3-201ENST00000361720 2123 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
USH1CQ9Y6N9 FAIM-203ENST00000393034 927 ntAPPRIS P3 TSL 2 BASIC19.23■□□□□ 0.67
USH1CQ9Y6N9 AC123595.1-201ENST00000440769 1046 ntBASIC19.23■□□□□ 0.67
USH1CQ9Y6N9 AL138963.3-201ENST00000610057 588 ntTSL 4 BASIC19.23■□□□□ 0.67
USH1CQ9Y6N9 AC004528.2-201ENST00000610701 440 ntTSL 5 BASIC19.23■□□□□ 0.67
USH1CQ9Y6N9 EFTUD1P1-204ENST00000560401 1798 ntBASIC19.23■□□□□ 0.67
USH1CQ9Y6N9 Z98044.1-201ENST00000632503 1764 ntBASIC19.23■□□□□ 0.67
USH1CQ9Y6N9 NUAK1-201ENST00000261402 6828 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
USH1CQ9Y6N9 ZNF274-203ENST00000424679 2539 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
USH1CQ9Y6N9 C2CD2L-201ENST00000336702 4771 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
USH1CQ9Y6N9 RAB28-208ENST00000630951 1679 ntTSL 5 BASIC19.23■□□□□ 0.67
USH1CQ9Y6N9 PAK4-201ENST00000321944 2555 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
USH1CQ9Y6N9 BRSK2-215ENST00000544817 1842 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
USH1CQ9Y6N9 NRM-203ENST00000376421 1734 ntAPPRIS P2 TSL 1 (best) BASIC19.22■□□□□ 0.67
USH1CQ9Y6N9 MEN1-205ENST00000377316 2868 ntTSL 5 BASIC19.22■□□□□ 0.67
USH1CQ9Y6N9 MAST1-208ENST00000591495 1496 ntTSL 5 BASIC19.22■□□□□ 0.67
USH1CQ9Y6N9 NCAN-201ENST00000252575 6387 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
USH1CQ9Y6N9 ZYG11A-203ENST00000612017 3682 ntTSL 5 BASIC19.22■□□□□ 0.67
USH1CQ9Y6N9 HSPA8-202ENST00000453788 2004 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
USH1CQ9Y6N9 KRT19-201ENST00000361566 1390 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
USH1CQ9Y6N9 UBR3-203ENST00000418381 7951 ntAPPRIS P1 TSL 5 BASIC19.22■□□□□ 0.67
USH1CQ9Y6N9 CCDC74A-201ENST00000295171 1543 ntAPPRIS P3 TSL 1 (best) BASIC19.22■□□□□ 0.67
USH1CQ9Y6N9 CCDC74B-201ENST00000310463 1549 ntAPPRIS P3 TSL 2 BASIC19.22■□□□□ 0.67
USH1CQ9Y6N9 AL139099.2-201ENST00000555043 2469 ntTSL 2 BASIC19.22■□□□□ 0.67
USH1CQ9Y6N9 STK16-201ENST00000396738 1673 ntAPPRIS P1 TSL 2 BASIC19.22■□□□□ 0.67
USH1CQ9Y6N9 AK1-201ENST00000223836 736 ntTSL 3 BASIC19.22■□□□□ 0.67
USH1CQ9Y6N9 MRPL37-201ENST00000336230 1179 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
USH1CQ9Y6N9 PRSS3-202ENST00000361005 966 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
USH1CQ9Y6N9 HIGD1A-204ENST00000452906 585 ntTSL 2 BASIC19.22■□□□□ 0.67
USH1CQ9Y6N9 AC141586.3-201ENST00000562166 1838 ntBASIC19.22■□□□□ 0.67
USH1CQ9Y6N9 VIPR1-201ENST00000325123 2773 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
USH1CQ9Y6N9 TNFAIP2-201ENST00000333007 4175 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
USH1CQ9Y6N9 CBLC-201ENST00000270279 1579 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
USH1CQ9Y6N9 AC093525.10-201ENST00000625130 1569 ntBASIC19.22■□□□□ 0.67
USH1CQ9Y6N9 BCR-201ENST00000305877 7082 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
USH1CQ9Y6N9 MAN1B1-207ENST00000535144 2296 ntTSL 2 BASIC19.22■□□□□ 0.67
USH1CQ9Y6N9 ARHGAP8-204ENST00000389774 1725 ntAPPRIS ALT2 TSL 2 BASIC19.22■□□□□ 0.67
USH1CQ9Y6N9 ABCC6-209ENST00000640696 1893 ntTSL 5 BASIC19.22■□□□□ 0.67
USH1CQ9Y6N9 MME-202ENST00000382989 1319 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
USH1CQ9Y6N9 MAN2C1-244ENST00000618257 1346 ntTSL 5 BASIC19.22■□□□□ 0.67
USH1CQ9Y6N9 SNRPA-201ENST00000243563 1621 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
USH1CQ9Y6N9 SLC36A1-209ENST00000521925 1621 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
USH1CQ9Y6N9 PLIN5-201ENST00000381848 2470 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
USH1CQ9Y6N9 RAB11B-201ENST00000328024 1751 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
USH1CQ9Y6N9 MRPL40-201ENST00000333130 1387 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
USH1CQ9Y6N9 TSTA3-201ENST00000425753 1362 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
USH1CQ9Y6N9 CASKIN2-201ENST00000321617 5015 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
USH1CQ9Y6N9 HNRNPLL-206ENST00000410076 1687 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
USH1CQ9Y6N9 ARL5A-201ENST00000295087 5326 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
USH1CQ9Y6N9 GDPD1-201ENST00000284116 1821 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
USH1CQ9Y6N9 KRBOX1-AS1-201ENST00000447834 2134 ntTSL 2 BASIC19.21■□□□□ 0.67
USH1CQ9Y6N9 CALM3-201ENST00000291295 2289 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
USH1CQ9Y6N9 AC068880.1-201ENST00000507289 2297 ntBASIC19.21■□□□□ 0.67
USH1CQ9Y6N9 CBX2-202ENST00000310942 4644 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
USH1CQ9Y6N9 UBE2D2-202ENST00000398733 2702 ntAPPRIS P2 TSL 1 (best) BASIC19.21■□□□□ 0.67
USH1CQ9Y6N9 MARK2-209ENST00000509502 2862 ntAPPRIS ALT2 TSL 2 BASIC19.21■□□□□ 0.67
USH1CQ9Y6N9 NFKB2-201ENST00000189444 3011 ntAPPRIS ALT1 TSL 1 (best) BASIC19.21■□□□□ 0.67
USH1CQ9Y6N9 GTF2H4-201ENST00000259895 1735 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
USH1CQ9Y6N9 SCOC-208ENST00000510586 2193 ntAPPRIS ALT1 TSL 5 BASIC19.21■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 20.4 ms