Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 DBNDD2-203ENST00000372710 1417 ntTSL 1 (best) BASIC5.97□□□□□ -1.45
SYNE1Q8NF91 ARHGAP22-204ENST00000417247 2340 ntTSL 2 BASIC5.97□□□□□ -1.45
SYNE1Q8NF91 LCK-214ENST00000619559 2099 ntAPPRIS P1 TSL 1 (best) BASIC5.97□□□□□ -1.45
SYNE1Q8NF91 CKS1B-203ENST00000368439 912 ntTSL 1 (best) BASIC5.97□□□□□ -1.45
SYNE1Q8NF91 KAZN-209ENST00000636564 1197 ntTSL 5 BASIC5.97□□□□□ -1.45
SYNE1Q8NF91 AFG3L1P-203ENST00000418696 2965 ntTSL 2 BASIC5.97□□□□□ -1.45
SYNE1Q8NF91 SLC37A1-201ENST00000352133 3664 ntAPPRIS P1 TSL 1 (best) BASIC5.97□□□□□ -1.45
SYNE1Q8NF91 GABBR1-205ENST00000377034 4527 ntAPPRIS P1 TSL 1 (best) BASIC5.97□□□□□ -1.45
SYNE1Q8NF91 VAV2-202ENST00000371851 5101 ntAPPRIS ALT2 TSL 5 BASIC5.97□□□□□ -1.45
SYNE1Q8NF91 SLC6A8-201ENST00000253122 3763 ntAPPRIS P1 TSL 1 (best) BASIC5.97□□□□□ -1.45
SYNE1Q8NF91 NFU1-202ENST00000394305 1058 ntTSL 5 BASIC5.97□□□□□ -1.45
SYNE1Q8NF91 AC126696.3-202ENST00000570159 553 ntTSL 5 BASIC5.97□□□□□ -1.45
SYNE1Q8NF91 AL031985.4-201ENST00000642138 673 ntBASIC5.97□□□□□ -1.45
SYNE1Q8NF91 MAFF-204ENST00000426621 2216 ntAPPRIS P1 TSL 4 BASIC5.97□□□□□ -1.45
SYNE1Q8NF91 RDH10-201ENST00000240285 3949 ntAPPRIS P1 TSL 1 (best) BASIC5.97□□□□□ -1.45
SYNE1Q8NF91 UNC5D-204ENST00000420357 2966 ntTSL 5 BASIC5.97□□□□□ -1.45
SYNE1Q8NF91 VCY1B-201ENST00000250823 550 ntAPPRIS P1 TSL 1 (best) BASIC5.97□□□□□ -1.45
SYNE1Q8NF91 VCY-201ENST00000250825 550 ntAPPRIS P1 TSL 1 (best) BASIC5.97□□□□□ -1.45
SYNE1Q8NF91 CRAT-202ENST00000393384 973 ntTSL 2 BASIC5.97□□□□□ -1.45
SYNE1Q8NF91 CLN6-204ENST00000564752 900 ntTSL 3 BASIC5.97□□□□□ -1.45
SYNE1Q8NF91 POC1A-202ENST00000394970 1999 ntTSL 1 (best) BASIC5.97□□□□□ -1.45
SYNE1Q8NF91 PACSIN3-211ENST00000539589 2009 ntAPPRIS P1 TSL 2 BASIC5.97□□□□□ -1.45
SYNE1Q8NF91 POC1B-209ENST00000549035 2038 ntTSL 2 BASIC5.97□□□□□ -1.45
SYNE1Q8NF91 TCF7-201ENST00000342854 3045 ntAPPRIS P2 TSL 1 (best) BASIC5.97□□□□□ -1.45
SYNE1Q8NF91 LZTS3-203ENST00000360342 4055 ntTSL 1 (best) BASIC5.97□□□□□ -1.45
SYNE1Q8NF91 H19-201ENST00000411754 1788 ntTSL 5 BASIC5.96□□□□□ -1.45
SYNE1Q8NF91 ISLR2-201ENST00000361742 4817 ntAPPRIS P1 TSL 1 (best) BASIC5.96□□□□□ -1.45
SYNE1Q8NF91 INSL3-202ENST00000379695 899 ntTSL 1 (best) BASIC5.96□□□□□ -1.45
SYNE1Q8NF91 LINC02167-201ENST00000562769 594 ntTSL 3 BASIC5.96□□□□□ -1.45
SYNE1Q8NF91 TNFRSF12A-206ENST00000575124 1133 ntTSL 2 BASIC5.96□□□□□ -1.45
SYNE1Q8NF91 AC004816.2-201ENST00000622856 284 ntTSL 5 BASIC5.96□□□□□ -1.45
SYNE1Q8NF91 MCU-202ENST00000373053 2949 ntAPPRIS P1 TSL 1 (best) BASIC5.96□□□□□ -1.45
SYNE1Q8NF91 PANX1-201ENST00000227638 2769 ntAPPRIS P2 TSL 1 (best) BASIC5.96□□□□□ -1.45
SYNE1Q8NF91 ZDHHC8P1-201ENST00000255890 2382 ntTSL 2 BASIC5.96□□□□□ -1.45
SYNE1Q8NF91 RECQL4-209ENST00000617875 3809 ntAPPRIS P1 TSL 1 (best) BASIC5.96□□□□□ -1.45
SYNE1Q8NF91 AC010616.1-201ENST00000597630 2078 ntAPPRIS P1 TSL 5 BASIC5.96□□□□□ -1.45
SYNE1Q8NF91 SAAL1-204ENST00000529318 1503 ntAPPRIS ALT1 TSL 5 BASIC5.96□□□□□ -1.45
SYNE1Q8NF91 RABEPK-204ENST00000394125 1466 ntAPPRIS P1 TSL 1 (best) BASIC5.96□□□□□ -1.45
SYNE1Q8NF91 CCDC91-207ENST00000539107 2440 ntTSL 5 BASIC5.96□□□□□ -1.45
SYNE1Q8NF91 TWF2-203ENST00000499914 1440 ntTSL 5 BASIC5.96□□□□□ -1.45
SYNE1Q8NF91 ESPN-202ENST00000416731 1338 ntTSL 5 BASIC5.96□□□□□ -1.45
SYNE1Q8NF91 SACM1L-202ENST00000418611 2164 ntTSL 2 BASIC5.96□□□□□ -1.45
SYNE1Q8NF91 MDK-201ENST00000359803 985 ntAPPRIS P2 TSL 2 BASIC5.96□□□□□ -1.45
SYNE1Q8NF91 AC010422.3-201ENST00000597692 838 ntAPPRIS P1 TSL 2 BASIC5.96□□□□□ -1.45
SYNE1Q8NF91 TNFAIP8L3-202ENST00000637513 2002 ntAPPRIS P1 TSL 1 (best) BASIC5.96□□□□□ -1.45
SYNE1Q8NF91 ISLR2-204ENST00000453268 2812 ntAPPRIS P1 TSL 1 (best) BASIC5.96□□□□□ -1.45
SYNE1Q8NF91 SKI-201ENST00000378536 5613 ntAPPRIS P1 TSL 1 (best) BASIC5.96□□□□□ -1.45
SYNE1Q8NF91 MTMR9LP-204ENST00000441044 2624 ntTSL 1 (best) BASIC5.96□□□□□ -1.45
SYNE1Q8NF91 DGKI-203ENST00000446122 4070 ntAPPRIS ALT2 TSL 5 BASIC5.96□□□□□ -1.45
SYNE1Q8NF91 TMEM230-207ENST00000379286 1735 ntAPPRIS P1 TSL 2 BASIC5.96□□□□□ -1.45
SYNE1Q8NF91 CFAP46-201ENST00000368585 1825 ntAPPRIS ALT2 TSL 2 BASIC5.96□□□□□ -1.46
SYNE1Q8NF91 AC011506.1-201ENST00000474329 610 ntBASIC5.96□□□□□ -1.46
SYNE1Q8NF91 CHCHD6-204ENST00000508789 1159 ntAPPRIS ALT2 TSL 1 (best) BASIC5.96□□□□□ -1.46
SYNE1Q8NF91 AP000692.2-201ENST00000608391 879 ntBASIC5.96□□□□□ -1.46
SYNE1Q8NF91 SMIM20-205ENST00000614775 1190 ntTSL 5 BASIC5.96□□□□□ -1.46
SYNE1Q8NF91 B3GALNT1-202ENST00000392779 3221 ntAPPRIS P1 TSL 2 BASIC5.96□□□□□ -1.46
SYNE1Q8NF91 DRAM2-201ENST00000286692 2246 ntAPPRIS P1 TSL 1 (best) BASIC5.96□□□□□ -1.46
SYNE1Q8NF91 AC099343.3-201ENST00000605834 2503 ntBASIC5.96□□□□□ -1.46
SYNE1Q8NF91 EHBP1-209ENST00000431489 5076 ntAPPRIS ALT2 TSL 1 (best) BASIC5.96□□□□□ -1.46
SYNE1Q8NF91 UBTF-202ENST00000343638 4684 ntTSL 1 (best) BASIC5.96□□□□□ -1.46
SYNE1Q8NF91 LGALS9C-209ENST00000581545 1378 ntTSL 5 BASIC5.96□□□□□ -1.46
SYNE1Q8NF91 FAM228B-210ENST00000615575 1357 ntAPPRIS P3 TSL 5 BASIC5.96□□□□□ -1.46
SYNE1Q8NF91 C17orf58-204ENST00000580729 2065 ntTSL 5 BASIC5.96□□□□□ -1.46
SYNE1Q8NF91 DTX3-201ENST00000337737 2029 ntAPPRIS P3 TSL 2 BASIC5.96□□□□□ -1.46
SYNE1Q8NF91 EPS8L1-203ENST00000540810 2360 ntTSL 2 BASIC5.96□□□□□ -1.46
SYNE1Q8NF91 ATP6V0E1-204ENST00000519911 718 ntTSL 2 BASIC5.96□□□□□ -1.46
SYNE1Q8NF91 RASIP1-201ENST00000222145 3308 ntAPPRIS P1 TSL 1 (best) BASIC5.96□□□□□ -1.46
SYNE1Q8NF91 GCSH-201ENST00000315467 1597 ntAPPRIS P1 TSL 1 (best) BASIC5.96□□□□□ -1.46
SYNE1Q8NF91 NDRG2-242ENST00000555158 2216 ntAPPRIS ALT1 TSL 1 (best) BASIC5.96□□□□□ -1.46
SYNE1Q8NF91 MRPL23-AS1-201ENST00000419080 1876 ntTSL 3 BASIC5.96□□□□□ -1.46
SYNE1Q8NF91 SCRN2-201ENST00000290216 1548 ntAPPRIS P1 TSL 1 (best) BASIC5.96□□□□□ -1.46
SYNE1Q8NF91 ZSWIM5-201ENST00000359600 5819 ntAPPRIS P1 TSL 1 (best) BASIC5.96□□□□□ -1.46
SYNE1Q8NF91 SLC25A3-211ENST00000548847 1369 ntTSL 5 BASIC5.96□□□□□ -1.46
SYNE1Q8NF91 NOL3-211ENST00000568146 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC5.96□□□□□ -1.46
SYNE1Q8NF91 VEGFA-206ENST00000372077 2834 ntTSL 1 (best) BASIC5.96□□□□□ -1.46
SYNE1Q8NF91 INPP5B-201ENST00000373021 3934 ntTSL 1 (best) BASIC5.96□□□□□ -1.46
SYNE1Q8NF91 PTPRM-211ENST00000580170 5941 ntAPPRIS ALT2 TSL 1 (best) BASIC5.96□□□□□ -1.46
SYNE1Q8NF91 AC115618.1-201ENST00000376775 549 ntTSL 3 BASIC5.96□□□□□ -1.46
SYNE1Q8NF91 MIR1238-201ENST00000408483 83 ntBASIC5.96□□□□□ -1.46
SYNE1Q8NF91 SLC25A3P1-201ENST00000443844 931 ntBASIC5.96□□□□□ -1.46
SYNE1Q8NF91 AC015712.4-203ENST00000559673 630 ntTSL 3 BASIC5.96□□□□□ -1.46
SYNE1Q8NF91 RPL23AP53-202ENST00000606507 370 ntTSL 3 BASIC5.96□□□□□ -1.46
SYNE1Q8NF91 BTBD11-205ENST00000490090 4614 ntTSL 2 BASIC5.96□□□□□ -1.46
SYNE1Q8NF91 GPAA1-201ENST00000355091 2078 ntAPPRIS P1 TSL 1 (best) BASIC5.96□□□□□ -1.46
SYNE1Q8NF91 GOLGA4-208ENST00000444882 1451 ntTSL 1 (best) BASIC5.96□□□□□ -1.46
SYNE1Q8NF91 ZNF669-201ENST00000343381 1951 ntAPPRIS P3 TSL 1 (best) BASIC5.96□□□□□ -1.46
SYNE1Q8NF91 RALGPS1-204ENST00000373436 1667 ntTSL 1 (best) BASIC5.96□□□□□ -1.46
SYNE1Q8NF91 SLC4A3-201ENST00000273063 4246 ntTSL 1 (best) BASIC5.96□□□□□ -1.46
SYNE1Q8NF91 GRK6-201ENST00000355472 2939 ntAPPRIS P3 TSL 1 (best) BASIC5.96□□□□□ -1.46
SYNE1Q8NF91 ARNTL2-204ENST00000395901 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC5.96□□□□□ -1.46
SYNE1Q8NF91 TMEM243-201ENST00000257637 1063 ntAPPRIS P1 TSL 1 (best) BASIC5.96□□□□□ -1.46
SYNE1Q8NF91 TPPP3-201ENST00000290942 1116 ntAPPRIS P1 TSL 2 BASIC5.96□□□□□ -1.46
SYNE1Q8NF91 TPPP3-202ENST00000393957 1058 ntAPPRIS P1 TSL 1 (best) BASIC5.96□□□□□ -1.46
SYNE1Q8NF91 ST20-202ENST00000485386 529 ntAPPRIS P1 TSL 1 (best) BASIC5.96□□□□□ -1.46
SYNE1Q8NF91 NUDT16P1-203ENST00000513809 620 ntBASIC5.96□□□□□ -1.46
SYNE1Q8NF91 B3GAT3-205ENST00000534026 1120 ntTSL 2 BASIC5.96□□□□□ -1.46
SYNE1Q8NF91 ATG4B-204ENST00000402096 1685 ntTSL 2 BASIC5.96□□□□□ -1.46
SYNE1Q8NF91 RAP2C-202ENST00000370874 2333 ntAPPRIS P1 TSL 2 BASIC5.96□□□□□ -1.46
SYNE1Q8NF91 YAP1-210ENST00000615667 5398 ntAPPRIS ALT2 TSL 5 BASIC5.96□□□□□ -1.46
SYNE1Q8NF91 OLFM1-204ENST00000371793 2444 ntAPPRIS P1 TSL 3 BASIC5.96□□□□□ -1.46
Retrieved 100 of 98,524 protein–RNA pairs in 55.5 ms