Protein–RNA interactions for Protein: Q8N2C3

DEPDC4, DEP domain-containing protein 4, humanhuman

Predictions only

Length 294 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4Q8N2C3 C2orf82-203ENST00000409533 561 ntAPPRIS P2 TSL 4 BASIC18■□□□□ 0.47
DEPDC4Q8N2C3 LY6E-202ENST00000429120 1173 ntAPPRIS P2 TSL 1 (best) BASIC18■□□□□ 0.47
DEPDC4Q8N2C3 UQCRFS1P1-201ENST00000435169 820 ntBASIC18■□□□□ 0.47
DEPDC4Q8N2C3 TRIM35-203ENST00000521253 1215 ntTSL 1 (best) BASIC18■□□□□ 0.47
DEPDC4Q8N2C3 AL138781.1-201ENST00000566567 1274 ntBASIC18■□□□□ 0.47
DEPDC4Q8N2C3 MAPKAPK3-208ENST00000621469 2563 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
DEPDC4Q8N2C3 AC013268.5-201ENST00000454928 1959 ntTSL 2 BASIC18■□□□□ 0.47
DEPDC4Q8N2C3 AL645608.1-202ENST00000417705 1389 ntTSL 3 BASIC18■□□□□ 0.47
DEPDC4Q8N2C3 ADAP1-205ENST00000449296 2093 ntTSL 2 BASIC18■□□□□ 0.47
DEPDC4Q8N2C3 ARID1B-203ENST00000350026 7962 ntAPPRIS P3 TSL 1 (best) BASIC18■□□□□ 0.47
DEPDC4Q8N2C3 PRDM5-201ENST00000264808 5330 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
DEPDC4Q8N2C3 WNK1-203ENST00000447667 1902 ntTSL 1 (best) BASIC18■□□□□ 0.47
DEPDC4Q8N2C3 ZNF346-209ENST00000512315 1575 ntTSL 2 BASIC18■□□□□ 0.47
DEPDC4Q8N2C3 POFUT2-201ENST00000331343 4825 ntTSL 1 (best) BASIC18■□□□□ 0.47
DEPDC4Q8N2C3 MREG-201ENST00000263268 1314 ntAPPRIS P1 TSL 2 BASIC17.99■□□□□ 0.47
DEPDC4Q8N2C3 UBE2E3-201ENST00000392415 1347 ntAPPRIS P1 TSL 3 BASIC17.99■□□□□ 0.47
DEPDC4Q8N2C3 UMOD-201ENST00000302509 2477 ntAPPRIS P3 TSL 5 BASIC17.99■□□□□ 0.47
DEPDC4Q8N2C3 CTBP2-202ENST00000334808 2130 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
DEPDC4Q8N2C3 CNIH3-201ENST00000272133 2558 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
DEPDC4Q8N2C3 PGAP3-206ENST00000579146 2220 ntTSL 2 BASIC17.99■□□□□ 0.47
DEPDC4Q8N2C3 MTAP-204ENST00000460874 1434 ntTSL 2 BASIC17.99■□□□□ 0.47
DEPDC4Q8N2C3 ZNF419-205ENST00000424930 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC17.99■□□□□ 0.47
DEPDC4Q8N2C3 HEBP2-204ENST00000607197 10014 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
DEPDC4Q8N2C3 TRIM7-205ENST00000422067 1954 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
DEPDC4Q8N2C3 LINC01819-201ENST00000422351 2156 ntTSL 5 BASIC17.99■□□□□ 0.47
DEPDC4Q8N2C3 AC106820.2-201ENST00000563775 3264 ntBASIC17.99■□□□□ 0.47
DEPDC4Q8N2C3 CUEDC2-201ENST00000369937 1191 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
DEPDC4Q8N2C3 APTR-205ENST00000447009 902 ntTSL 2 BASIC17.99■□□□□ 0.47
DEPDC4Q8N2C3 TNNI3-207ENST00000588882 669 ntTSL 2 BASIC17.99■□□□□ 0.47
DEPDC4Q8N2C3 FBXL7-202ENST00000504595 4562 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
DEPDC4Q8N2C3 RWDD4-206ENST00000512740 1393 ntTSL 5 BASIC17.99■□□□□ 0.47
DEPDC4Q8N2C3 AC079598.2-202ENST00000546624 1451 ntBASIC17.99■□□□□ 0.47
DEPDC4Q8N2C3 MTMR1-208ENST00000445323 4516 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
DEPDC4Q8N2C3 ANKRD13D-216ENST00000514166 2138 ntTSL 2 BASIC17.99■□□□□ 0.47
DEPDC4Q8N2C3 FOXN3-209ENST00000555353 1595 ntAPPRIS P3 TSL 1 (best) BASIC17.99■□□□□ 0.47
DEPDC4Q8N2C3 ACBD4-207ENST00000586346 1579 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
DEPDC4Q8N2C3 CD55-201ENST00000314754 2220 ntAPPRIS ALT2 TSL 1 (best) BASIC17.99■□□□□ 0.47
DEPDC4Q8N2C3 ADK-206ENST00000541550 2222 ntTSL 2 BASIC17.99■□□□□ 0.47
DEPDC4Q8N2C3 CPSF3-201ENST00000238112 2345 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
DEPDC4Q8N2C3 NR1H2-201ENST00000253727 1998 ntAPPRIS P2 TSL 1 (best) BASIC17.99■□□□□ 0.47
DEPDC4Q8N2C3 B3GNT9-201ENST00000449549 2917 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
DEPDC4Q8N2C3 SLC22A23-203ENST00000406686 5658 ntAPPRIS P2 TSL 5 BASIC17.98■□□□□ 0.47
DEPDC4Q8N2C3 CNNM3-201ENST00000305510 3447 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
DEPDC4Q8N2C3 KMT5B-203ENST00000401547 2666 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
DEPDC4Q8N2C3 SLC16A13-201ENST00000308027 1748 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
DEPDC4Q8N2C3 ZNF346-201ENST00000358149 2314 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
DEPDC4Q8N2C3 NOMO3-202ENST00000399336 4356 ntAPPRIS P2 TSL 1 (best) BASIC17.98■□□□□ 0.47
DEPDC4Q8N2C3 AK3-202ENST00000381809 2736 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
DEPDC4Q8N2C3 IFFO1-212ENST00000619571 2724 ntTSL 2 BASIC17.98■□□□□ 0.47
DEPDC4Q8N2C3 SSC4D-201ENST00000275560 2801 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
DEPDC4Q8N2C3 TMEM218-201ENST00000279968 1034 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
DEPDC4Q8N2C3 RNPS1-201ENST00000301730 1276 ntAPPRIS P1 TSL 2 BASIC17.98■□□□□ 0.47
DEPDC4Q8N2C3 NAA20-202ENST00000334982 1260 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
DEPDC4Q8N2C3 AC025754.1-201ENST00000507566 407 ntTSL 3 BASIC17.98■□□□□ 0.47
DEPDC4Q8N2C3 CIRBP-214ENST00000587896 1081 ntTSL 2 BASIC17.98■□□□□ 0.47
DEPDC4Q8N2C3 AC016405.3-201ENST00000607710 860 ntBASIC17.98■□□□□ 0.47
DEPDC4Q8N2C3 TRMT2A-203ENST00000404751 2498 ntAPPRIS ALT2 TSL 2 BASIC17.98■□□□□ 0.47
DEPDC4Q8N2C3 GAS2L1-210ENST00000621062 2483 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
DEPDC4Q8N2C3 TP53BP2-201ENST00000343537 4651 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
DEPDC4Q8N2C3 PKP3-201ENST00000331563 2809 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
DEPDC4Q8N2C3 ALDOA-212ENST00000564546 2104 ntAPPRIS P2 TSL 1 (best) BASIC17.98■□□□□ 0.47
DEPDC4Q8N2C3 DOLPP1-203ENST00000406974 2037 ntTSL 2 BASIC17.98■□□□□ 0.47
DEPDC4Q8N2C3 SORBS3-221ENST00000523965 2028 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
DEPDC4Q8N2C3 COPS7A-204ENST00000534947 2034 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
DEPDC4Q8N2C3 ACHE-205ENST00000419336 1906 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
DEPDC4Q8N2C3 CASTOR1-202ENST00000407689 1623 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
DEPDC4Q8N2C3 KRT8P17-201ENST00000453110 1448 ntBASIC17.98■□□□□ 0.47
DEPDC4Q8N2C3 AC087633.2-202ENST00000565166 1439 ntBASIC17.98■□□□□ 0.47
DEPDC4Q8N2C3 MEN1-201ENST00000312049 2761 ntAPPRIS ALT1 TSL 1 (best) BASIC17.97■□□□□ 0.47
DEPDC4Q8N2C3 PSMG4-209ENST00000473000 4603 ntTSL 2 BASIC17.97■□□□□ 0.47
DEPDC4Q8N2C3 SYT7-208ENST00000542670 1887 ntTSL 5 BASIC17.97■□□□□ 0.47
DEPDC4Q8N2C3 CLDN14-202ENST00000399135 1752 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
DEPDC4Q8N2C3 SBK2-201ENST00000344158 1056 ntAPPRIS P1 TSL 2 BASIC17.97■□□□□ 0.47
DEPDC4Q8N2C3 PPP1CA-202ENST00000358239 1054 ntTSL 2 BASIC17.97■□□□□ 0.47
DEPDC4Q8N2C3 COA6-202ENST00000366613 641 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
DEPDC4Q8N2C3 RAMP1-202ENST00000403885 650 ntTSL 3 BASIC17.97■□□□□ 0.47
DEPDC4Q8N2C3 SBK2-202ENST00000413299 1085 ntAPPRIS P1 TSL 5 BASIC17.97■□□□□ 0.47
DEPDC4Q8N2C3 RARRES2P4-201ENST00000514074 484 ntBASIC17.97■□□□□ 0.47
DEPDC4Q8N2C3 PHB2-213ENST00000546111 858 ntTSL 2 BASIC17.97■□□□□ 0.47
DEPDC4Q8N2C3 AC138028.5-201ENST00000566114 558 ntTSL 5 BASIC17.97■□□□□ 0.47
DEPDC4Q8N2C3 PLLP-204ENST00000569059 665 ntTSL 3 BASIC17.97■□□□□ 0.47
DEPDC4Q8N2C3 AC007216.1-201ENST00000570197 601 ntTSL 4 BASIC17.97■□□□□ 0.47
DEPDC4Q8N2C3 OGFR-204ENST00000621591 1194 ntTSL 5 BASIC17.97■□□□□ 0.47
DEPDC4Q8N2C3 GAMT-205ENST00000640762 751 ntTSL 5 BASIC17.97■□□□□ 0.47
DEPDC4Q8N2C3 TM9SF1-203ENST00000524835 1938 ntTSL 2 BASIC17.97■□□□□ 0.47
DEPDC4Q8N2C3 RFT1-202ENST00000394738 1800 ntTSL 5 BASIC17.97■□□□□ 0.47
DEPDC4Q8N2C3 ST3GAL3-201ENST00000262915 2470 ntTSL 5 BASIC17.97■□□□□ 0.47
DEPDC4Q8N2C3 HBEGF-201ENST00000230990 2386 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
DEPDC4Q8N2C3 GAREM2-201ENST00000401533 4161 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
DEPDC4Q8N2C3 ERCC2-203ENST00000391944 2334 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
DEPDC4Q8N2C3 SMIM4-203ENST00000477703 1770 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
DEPDC4Q8N2C3 PAQR4-202ENST00000318782 2793 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
DEPDC4Q8N2C3 TUSC2-201ENST00000232496 1691 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
DEPDC4Q8N2C3 EGLN2-201ENST00000303961 2102 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
DEPDC4Q8N2C3 NPDC1-202ENST00000371601 1494 ntAPPRIS P2 TSL 1 (best) BASIC17.96■□□□□ 0.47
DEPDC4Q8N2C3 CYB561-204ENST00000448884 1496 ntTSL 2 BASIC17.96■□□□□ 0.47
DEPDC4Q8N2C3 LDLRAD4-211ENST00000587757 2171 ntTSL 2 BASIC17.96■□□□□ 0.47
DEPDC4Q8N2C3 NOS1AP-206ENST00000530878 2894 ntAPPRIS ALT2 TSL 1 (best) BASIC17.96■□□□□ 0.47
DEPDC4Q8N2C3 BAIAP2-204ENST00000428708 2095 ntAPPRIS ALT2 TSL 1 (best) BASIC17.96■□□□□ 0.47
DEPDC4Q8N2C3 C2orf50-202ENST00000405022 980 ntAPPRIS P1 TSL 2 BASIC17.96■□□□□ 0.47
Retrieved 100 of 98,524 protein–RNA pairs in 51.6 ms