Protein–RNA interactions for Protein: Q6UVK1

CSPG4, Chondroitin sulfate proteoglycan 4, humanhuman

Predictions only

Length 2,322 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4Q6UVK1 AGPAT5-201ENST00000285518 3685 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
CSPG4Q6UVK1 ADRA1B-201ENST00000306675 2047 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
CSPG4Q6UVK1 CALB2-202ENST00000349553 1373 ntTSL 5 BASIC16■□□□□ 0.15
CSPG4Q6UVK1 RAB28-202ENST00000330852 1715 ntAPPRIS ALT1 TSL 1 (best) BASIC16■□□□□ 0.15
CSPG4Q6UVK1 GML-201ENST00000220940 723 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
CSPG4Q6UVK1 FAM187B-201ENST00000324675 1184 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
CSPG4Q6UVK1 COMTD1-201ENST00000372538 976 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
CSPG4Q6UVK1 TUBB8P6-201ENST00000436895 1288 ntBASIC16■□□□□ 0.15
CSPG4Q6UVK1 AC007161.3-201ENST00000469183 637 ntTSL 5 BASIC16■□□□□ 0.15
CSPG4Q6UVK1 NRXN1-205ENST00000401710 2873 ntTSL 5 BASIC16■□□□□ 0.15
CSPG4Q6UVK1 SLC43A3-225ENST00000533524 1879 ntAPPRIS ALT2 TSL 2 BASIC16■□□□□ 0.15
CSPG4Q6UVK1 SLC35F5-203ENST00000409342 2284 ntTSL 2 BASIC16■□□□□ 0.15
CSPG4Q6UVK1 ADAMTS2-202ENST00000274609 2044 ntTSL 1 (best) BASIC16■□□□□ 0.15
CSPG4Q6UVK1 DERL1-203ENST00000419562 918 ntTSL 2 BASIC16■□□□□ 0.15
CSPG4Q6UVK1 AC009078.2-202ENST00000463353 338 ntBASIC16■□□□□ 0.15
CSPG4Q6UVK1 ADGRD1-AS1-202ENST00000542980 1277 ntTSL 4 BASIC16■□□□□ 0.15
CSPG4Q6UVK1 AL353719.1-201ENST00000566847 864 ntBASIC16■□□□□ 0.15
CSPG4Q6UVK1 ISG15-203ENST00000624697 788 ntAPPRIS ALT2 TSL 3 BASIC16■□□□□ 0.15
CSPG4Q6UVK1 TP53I11-223ENST00000627720 195 ntTSL 5 BASIC16■□□□□ 0.15
CSPG4Q6UVK1 SMIM29-209ENST00000636500 1186 ntTSL 1 (best) BASIC16■□□□□ 0.15
CSPG4Q6UVK1 PTDSS2-201ENST00000308020 2445 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
CSPG4Q6UVK1 TMEM230-206ENST00000379283 1660 ntAPPRIS P1 TSL 3 BASIC16■□□□□ 0.15
CSPG4Q6UVK1 PRELID3A-203ENST00000587735 1694 ntTSL 1 (best) BASIC16■□□□□ 0.15
CSPG4Q6UVK1 CTCF-202ENST00000401394 2978 ntTSL 1 (best) BASIC16■□□□□ 0.15
CSPG4Q6UVK1 CBLC-202ENST00000341505 1441 ntTSL 1 (best) BASIC16■□□□□ 0.15
CSPG4Q6UVK1 ADGRB1-202ENST00000517894 6241 ntAPPRIS P1 TSL 5 BASIC16■□□□□ 0.15
CSPG4Q6UVK1 WASH6P-203ENST00000460206 1826 ntTSL 5 BASIC16■□□□□ 0.15
CSPG4Q6UVK1 LGR4-201ENST00000379214 5206 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
CSPG4Q6UVK1 SOX12-201ENST00000342665 4630 ntAPPRIS P1 BASIC15.99■□□□□ 0.15
CSPG4Q6UVK1 AL049796.1-201ENST00000565336 1766 ntBASIC15.99■□□□□ 0.15
CSPG4Q6UVK1 FEZF1-203ENST00000442488 2099 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
CSPG4Q6UVK1 UBE2B-201ENST00000265339 2515 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
CSPG4Q6UVK1 LCE4A-202ENST00000368777 672 ntAPPRIS P1 TSL 2 BASIC15.99■□□□□ 0.15
CSPG4Q6UVK1 MRPL28-203ENST00000429738 310 ntTSL 2 BASIC15.99■□□□□ 0.15
CSPG4Q6UVK1 KRT18P38-201ENST00000449496 1282 ntBASIC15.99■□□□□ 0.15
CSPG4Q6UVK1 AC010655.4-201ENST00000462662 707 ntTSL 4 BASIC15.99■□□□□ 0.15
CSPG4Q6UVK1 CA15P1-201ENST00000481698 905 ntBASIC15.99■□□□□ 0.15
CSPG4Q6UVK1 CCNJL-205ENST00000519673 940 ntTSL 2 BASIC15.99■□□□□ 0.15
CSPG4Q6UVK1 SDHD-206ENST00000528182 754 ntTSL 3 BASIC15.99■□□□□ 0.15
CSPG4Q6UVK1 FOSL1-203ENST00000531493 1200 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
CSPG4Q6UVK1 BCL10-202ENST00000620248 774 ntTSL 5 BASIC15.99■□□□□ 0.15
CSPG4Q6UVK1 AL513523.10-201ENST00000623024 1186 ntAPPRIS P1 TSL 5 BASIC15.99■□□□□ 0.15
CSPG4Q6UVK1 CSNK1G2-201ENST00000255641 2918 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
CSPG4Q6UVK1 TMEM235-203ENST00000550981 1786 ntTSL 2 BASIC15.99■□□□□ 0.15
CSPG4Q6UVK1 AC010616.1-201ENST00000597630 2078 ntAPPRIS P1 TSL 5 BASIC15.99■□□□□ 0.15
CSPG4Q6UVK1 RAB11FIP5-201ENST00000258098 4342 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
CSPG4Q6UVK1 BIN1-203ENST00000346226 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC15.99■□□□□ 0.15
CSPG4Q6UVK1 PNKP-224ENST00000631020 1545 ntTSL 5 BASIC15.99■□□□□ 0.15
CSPG4Q6UVK1 PACSIN3-211ENST00000539589 2009 ntAPPRIS P1 TSL 2 BASIC15.99■□□□□ 0.15
CSPG4Q6UVK1 ZNF446-208ENST00000622313 1884 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
CSPG4Q6UVK1 HLA-G-205ENST00000428701 1578 ntAPPRIS P2 BASIC15.99■□□□□ 0.15
CSPG4Q6UVK1 KRT17P6-201ENST00000453795 1220 ntBASIC15.99■□□□□ 0.15
CSPG4Q6UVK1 C1orf52-203ENST00000471115 1219 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
CSPG4Q6UVK1 KCNMA1-220ENST00000481070 896 ntTSL 2 BASIC15.99■□□□□ 0.15
CSPG4Q6UVK1 DIO1-206ENST00000525202 558 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
CSPG4Q6UVK1 MEF2D-203ENST00000368240 1905 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
CSPG4Q6UVK1 SOX3-201ENST00000370536 2132 ntAPPRIS P1 BASIC15.98■□□□□ 0.15
CSPG4Q6UVK1 HSPB6-201ENST00000004982 1457 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
CSPG4Q6UVK1 PCSK6-217ENST00000618548 4269 ntAPPRIS ALT2 TSL 1 (best) BASIC15.98■□□□□ 0.15
CSPG4Q6UVK1 CLN3-205ENST00000359984 1876 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
CSPG4Q6UVK1 SIN3B-209ENST00000596802 2556 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
CSPG4Q6UVK1 MICA-209ENST00000449934 1386 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
CSPG4Q6UVK1 SERGEF-201ENST00000265965 1566 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
CSPG4Q6UVK1 TGFBRAP1-202ENST00000393359 5979 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
CSPG4Q6UVK1 PRRT4-207ENST00000535159 2897 ntAPPRIS P1 TSL 5 BASIC15.98■□□□□ 0.15
CSPG4Q6UVK1 NPB-201ENST00000333383 704 ntAPPRIS P2 TSL 1 (best) BASIC15.98■□□□□ 0.15
CSPG4Q6UVK1 AANAT-202ENST00000392492 1005 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
CSPG4Q6UVK1 RNPS1-224ENST00000569598 918 ntTSL 5 BASIC15.98■□□□□ 0.15
CSPG4Q6UVK1 C1QTNF1-205ENST00000578229 1294 ntTSL 4 BASIC15.98■□□□□ 0.15
CSPG4Q6UVK1 PCCB-208ENST00000468777 1877 ntAPPRIS ALT2 TSL 3 BASIC15.98■□□□□ 0.15
CSPG4Q6UVK1 SMIM10L2B-201ENST00000433425 2737 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
CSPG4Q6UVK1 DTNBP1-203ENST00000355917 1359 ntTSL 5 BASIC15.98■□□□□ 0.15
CSPG4Q6UVK1 UBE2Q2-204ENST00000561851 1582 ntTSL 2 BASIC15.98■□□□□ 0.15
CSPG4Q6UVK1 GMDS-208ENST00000530927 1440 ntAPPRIS ALT2 TSL 1 (best) BASIC15.98■□□□□ 0.15
CSPG4Q6UVK1 ME2-202ENST00000382927 2492 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
CSPG4Q6UVK1 GNB1-201ENST00000378609 3132 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
CSPG4Q6UVK1 ETV7-203ENST00000373737 1488 ntAPPRIS ALT2 TSL 1 (best) BASIC15.97■□□□□ 0.15
CSPG4Q6UVK1 RPUSD3-201ENST00000383820 1225 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
CSPG4Q6UVK1 AL022342.1-201ENST00000400363 863 ntBASIC15.97■□□□□ 0.15
CSPG4Q6UVK1 CAPG-203ENST00000409670 1183 ntAPPRIS P1 TSL 5 BASIC15.97■□□□□ 0.15
CSPG4Q6UVK1 ATP5G2P1-201ENST00000433580 426 ntBASIC15.97■□□□□ 0.15
CSPG4Q6UVK1 SYNGR2-202ENST00000585591 949 ntAPPRIS P1 TSL 5 BASIC15.97■□□□□ 0.15
CSPG4Q6UVK1 AC008878.2-201ENST00000601870 942 ntAPPRIS P1 TSL 4 BASIC15.97■□□□□ 0.15
CSPG4Q6UVK1 NPAP1P7-201ENST00000613027 823 ntBASIC15.97■□□□□ 0.15
CSPG4Q6UVK1 SPAG16-202ENST00000331683 2177 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
CSPG4Q6UVK1 SAMD10-201ENST00000369886 2181 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
CSPG4Q6UVK1 C17orf58-201ENST00000334461 1535 ntTSL 2 BASIC15.97■□□□□ 0.15
CSPG4Q6UVK1 CACNB3-205ENST00000547392 2237 ntTSL 5 BASIC15.97■□□□□ 0.15
CSPG4Q6UVK1 C7orf25-201ENST00000350427 2451 ntAPPRIS P1 TSL 2 BASIC15.97■□□□□ 0.15
CSPG4Q6UVK1 FICD-201ENST00000361549 1816 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
CSPG4Q6UVK1 LRCH4-211ENST00000619071 2098 ntTSL 5 BASIC15.97■□□□□ 0.15
CSPG4Q6UVK1 MTX1-201ENST00000316721 1441 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
CSPG4Q6UVK1 SOX10-201ENST00000360880 2861 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
CSPG4Q6UVK1 SOX10-202ENST00000396884 2879 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
CSPG4Q6UVK1 HMBS-214ENST00000542729 1469 ntTSL 2 BASIC15.97■□□□□ 0.15
CSPG4Q6UVK1 AZU1-201ENST00000233997 908 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
CSPG4Q6UVK1 CNP-204ENST00000472031 1019 ntTSL 2 BASIC15.97■□□□□ 0.15
CSPG4Q6UVK1 AC005606.2-201ENST00000564438 614 ntTSL 2 BASIC15.97■□□□□ 0.15
CSPG4Q6UVK1 AC239803.1-201ENST00000594189 1278 ntTSL 5 BASIC15.97■□□□□ 0.15
CSPG4Q6UVK1 POLD2-202ENST00000406581 2158 ntAPPRIS P1 TSL 2 BASIC15.97■□□□□ 0.15
Retrieved 100 of 98,524 protein–RNA pairs in 44 ms