Protein–RNA interactions for Protein: P56524

HDAC4, Histone deacetylase 4, humanhuman

Predictions only

Length 1,084 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4P56524 PLD4-204ENST00000540372 2007 ntAPPRIS ALT2 TSL 2 BASIC20.25■□□□□ 0.83
HDAC4P56524 MEF2B-204ENST00000424583 1405 ntAPPRIS P1 TSL 5 BASIC20.25■□□□□ 0.83
HDAC4P56524 TMEM132A-202ENST00000453848 3346 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
HDAC4P56524 FARSA-207ENST00000588025 2057 ntTSL 5 BASIC20.25■□□□□ 0.83
HDAC4P56524 GCSH-201ENST00000315467 1597 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
HDAC4P56524 KXD1-203ENST00000540691 1592 ntAPPRIS P1 TSL 3 BASIC20.25■□□□□ 0.83
HDAC4P56524 NAA60-235ENST00000576916 1567 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
HDAC4P56524 BACE1-203ENST00000428381 1333 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
HDAC4P56524 FAM214B-203ENST00000378561 5771 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
HDAC4P56524 FGF17-201ENST00000359441 1714 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
HDAC4P56524 WBP2-213ENST00000590221 1745 ntAPPRIS ALT1 TSL 3 BASIC20.24■□□□□ 0.83
HDAC4P56524 STX18-201ENST00000306200 2138 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
HDAC4P56524 MGAT5B-201ENST00000301618 4486 ntAPPRIS P3 TSL 5 BASIC20.24■□□□□ 0.83
HDAC4P56524 RELB-207ENST00000625761 2279 ntAPPRIS ALT2 TSL 5 BASIC20.24■□□□□ 0.83
HDAC4P56524 THOC6-209ENST00000575576 1360 ntTSL 5 BASIC20.24■□□□□ 0.83
HDAC4P56524 FHL1-219ENST00000618438 2178 ntTSL 3 BASIC20.24■□□□□ 0.83
HDAC4P56524 PCMT1-203ENST00000367384 1938 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
HDAC4P56524 SPATA2L-202ENST00000335360 1001 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
HDAC4P56524 UBE2F-203ENST00000409633 837 ntTSL 3 BASIC20.24■□□□□ 0.83
HDAC4P56524 LINC01786-202ENST00000453732 389 ntTSL 2 BASIC20.24■□□□□ 0.83
HDAC4P56524 RNF121-214ENST00000533380 870 ntTSL 3 BASIC20.24■□□□□ 0.83
HDAC4P56524 ARF3-208ENST00000541959 807 ntAPPRIS P1 TSL 5 BASIC20.24■□□□□ 0.83
HDAC4P56524 C1QL1P1-201ENST00000568105 661 ntBASIC20.24■□□□□ 0.83
HDAC4P56524 JOSD2-202ENST00000595669 733 ntTSL 2 BASIC20.24■□□□□ 0.83
HDAC4P56524 AC110285.5-201ENST00000611501 352 ntBASIC20.24■□□□□ 0.83
HDAC4P56524 FGFR2-208ENST00000360144 3001 ntTSL 2 BASIC20.24■□□□□ 0.83
HDAC4P56524 MUTYH-203ENST00000372098 1839 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
HDAC4P56524 MUTYH-204ENST00000372104 1823 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
HDAC4P56524 MUTYH-205ENST00000372110 1809 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
HDAC4P56524 KCNQ2-201ENST00000344425 1426 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
HDAC4P56524 PAOX-201ENST00000278060 1858 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
HDAC4P56524 RASSF1-202ENST00000357043 1864 ntAPPRIS P3 TSL 1 (best) BASIC20.24■□□□□ 0.83
HDAC4P56524 C3orf70-201ENST00000335012 5901 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
HDAC4P56524 LINC02361-201ENST00000538731 1484 ntTSL 2 BASIC20.24■□□□□ 0.83
HDAC4P56524 DSCC1-201ENST00000313655 2314 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
HDAC4P56524 ETV4-204ENST00000545089 1628 ntTSL 2 BASIC20.24■□□□□ 0.83
HDAC4P56524 TM9SF1-203ENST00000524835 1938 ntTSL 2 BASIC20.23■□□□□ 0.83
HDAC4P56524 LSM4-203ENST00000593829 1908 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
HDAC4P56524 SLC3A2-206ENST00000535296 2084 ntTSL 5 BASIC20.23■□□□□ 0.83
HDAC4P56524 DCAKD-208ENST00000614054 2054 ntAPPRIS P1 TSL 2 BASIC20.23■□□□□ 0.83
HDAC4P56524 TRIM58-201ENST00000366481 3225 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
HDAC4P56524 GPR35-201ENST00000319838 2249 ntAPPRIS P3 TSL 2 BASIC20.23■□□□□ 0.83
HDAC4P56524 FAM129C-201ENST00000332386 2222 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
HDAC4P56524 FAM3A-203ENST00000369641 1359 ntTSL 5 BASIC20.23■□□□□ 0.83
HDAC4P56524 SNAPC2-201ENST00000221573 1542 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
HDAC4P56524 HOXD11-201ENST00000249504 1533 ntAPPRIS P1 TSL 3 BASIC20.23■□□□□ 0.83
HDAC4P56524 PODNL1-203ENST00000538371 1826 ntAPPRIS ALT2 TSL 2 BASIC20.23■□□□□ 0.83
HDAC4P56524 ANKRD18DP-204ENST00000455355 1975 ntBASIC20.23■□□□□ 0.83
HDAC4P56524 QKI-201ENST00000275262 6964 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
HDAC4P56524 LONRF3-202ENST00000371628 2550 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
HDAC4P56524 FMN2-201ENST00000319653 6434 ntAPPRIS P1 TSL 5 BASIC20.23■□□□□ 0.83
HDAC4P56524 AKR1A1-201ENST00000351829 1166 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
HDAC4P56524 HES2-203ENST00000377837 1222 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
HDAC4P56524 PSMG1-202ENST00000380900 907 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
HDAC4P56524 HOTAIRM1-203ENST00000429611 722 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
HDAC4P56524 A3GALT2-201ENST00000442999 1023 ntAPPRIS P1 TSL 5 BASIC20.23■□□□□ 0.83
HDAC4P56524 NDUFAF3-204ENST00000451378 774 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
HDAC4P56524 MAGI2-AS3-211ENST00000451809 707 ntTSL 3 BASIC20.23■□□□□ 0.83
HDAC4P56524 KRT16P5-201ENST00000455284 522 ntBASIC20.23■□□□□ 0.83
HDAC4P56524 SPHK1-207ENST00000590959 1851 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
HDAC4P56524 VSTM2A-203ENST00000404951 2521 ntTSL 5 BASIC20.23■□□□□ 0.83
HDAC4P56524 GJB3-202ENST00000373366 2217 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
HDAC4P56524 ST3GAL4-217ENST00000534083 1919 ntAPPRIS ALT1 TSL 5 BASIC20.23■□□□□ 0.83
HDAC4P56524 LRPPRC-202ENST00000409659 1610 ntTSL 5 BASIC20.23■□□□□ 0.83
HDAC4P56524 STARD3-219ENST00000580611 1989 ntTSL 5 BASIC20.23■□□□□ 0.83
HDAC4P56524 HIKESHI-207ENST00000533986 1694 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
HDAC4P56524 INSM2-201ENST00000307169 3013 ntAPPRIS P1 BASIC20.22■□□□□ 0.83
HDAC4P56524 HTRA4-201ENST00000302495 2095 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
HDAC4P56524 COL13A1-205ENST00000398978 3093 ntAPPRIS P4 TSL 5 BASIC20.22■□□□□ 0.83
HDAC4P56524 SOCS2-201ENST00000340600 2761 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
HDAC4P56524 AC104417.2-201ENST00000562989 1793 ntBASIC20.22■□□□□ 0.83
HDAC4P56524 ITPKB-203ENST00000429204 6162 ntAPPRIS P1 TSL 5 BASIC20.22■□□□□ 0.83
HDAC4P56524 DISC1-202ENST00000317586 2636 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
HDAC4P56524 NT5C3B-203ENST00000435506 975 ntAPPRIS P1 TSL 5 BASIC20.22■□□□□ 0.83
HDAC4P56524 AC098590.1-201ENST00000468126 897 ntBASIC20.22■□□□□ 0.83
HDAC4P56524 AC091564.2-201ENST00000527191 399 ntTSL 3 BASIC20.22■□□□□ 0.83
HDAC4P56524 FAM213B-215ENST00000537325 1096 ntAPPRIS ALT2 TSL 2 BASIC20.22■□□□□ 0.83
HDAC4P56524 AL359736.2-201ENST00000621992 437 ntBASIC20.22■□□□□ 0.83
HDAC4P56524 MTFP1-206ENST00000629597 482 ntTSL 5 BASIC20.22■□□□□ 0.83
HDAC4P56524 SLC35A2-213ENST00000635015 1008 ntTSL 2 BASIC20.22■□□□□ 0.83
HDAC4P56524 EIF2B1-201ENST00000424014 2477 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
HDAC4P56524 BACE2-201ENST00000328735 2824 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
HDAC4P56524 AL032819.2-201ENST00000624543 2162 ntBASIC20.22■□□□□ 0.83
HDAC4P56524 CDK13-207ENST00000613626 3099 ntTSL 5 BASIC20.22■□□□□ 0.83
HDAC4P56524 TMEM70-201ENST00000312184 2018 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
HDAC4P56524 SREBF2-209ENST00000612482 5365 ntTSL 5 BASIC20.22■□□□□ 0.83
HDAC4P56524 RNASEH2C-203ENST00000528220 1337 ntTSL 2 BASIC20.22■□□□□ 0.83
HDAC4P56524 LDHD-201ENST00000300051 2067 ntAPPRIS P3 TSL 1 (best) BASIC20.22■□□□□ 0.83
HDAC4P56524 ABHD14A-ACY1-202ENST00000463937 1705 ntAPPRIS ALT2 TSL 5 BASIC20.22■□□□□ 0.83
HDAC4P56524 CNEP1R1-203ENST00000458059 2965 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
HDAC4P56524 MAP3K11-210ENST00000532507 1812 ntTSL 2 BASIC20.21■□□□□ 0.83
HDAC4P56524 BCR-202ENST00000359540 4708 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
HDAC4P56524 FBXL17-205ENST00000542267 5188 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
HDAC4P56524 TSPY8-201ENST00000287721 1161 ntAPPRIS P5 TSL 1 (best) BASIC20.21■□□□□ 0.83
HDAC4P56524 TSPY10-201ENST00000428845 1161 ntAPPRIS P5 TSL 1 (best) BASIC20.21■□□□□ 0.83
HDAC4P56524 TSPY3-203ENST00000457222 1161 ntAPPRIS P5 TSL 1 (best) BASIC20.21■□□□□ 0.83
HDAC4P56524 RNASEK-202ENST00000548577 810 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
HDAC4P56524 AC140479.4-201ENST00000561715 463 ntTSL 4 BASIC20.21■□□□□ 0.83
HDAC4P56524 AL353593.2-202ENST00000602947 550 ntTSL 4 BASIC20.21■□□□□ 0.83
HDAC4P56524 C19orf66-209ENST00000591813 1481 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 29.8 ms