Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 IFI27L2-201ENST00000238609 511 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
FOXA1P55317 MED10-201ENST00000255764 1141 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
FOXA1P55317 NDUFB1-201ENST00000329559 528 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
FOXA1P55317 XBP1-202ENST00000344347 1131 ntTSL 5 BASIC18.76■□□□□ 0.59
FOXA1P55317 XXYLT1-202ENST00000356740 564 ntTSL 2 BASIC18.76■□□□□ 0.59
FOXA1P55317 PPA1-202ENST00000373232 1295 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
FOXA1P55317 PIGP-203ENST00000399098 972 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
FOXA1P55317 AC114730.2-201ENST00000417267 668 ntTSL 3 BASIC18.76■□□□□ 0.59
FOXA1P55317 RNF167-205ENST00000571816 1728 ntAPPRIS P3 TSL 5 BASIC18.76■□□□□ 0.59
FOXA1P55317 CNNM3-202ENST00000377060 3308 ntTSL 2 BASIC18.76■□□□□ 0.59
FOXA1P55317 TGFBR1-201ENST00000374990 5720 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
FOXA1P55317 CYTH1-209ENST00000589296 2159 ntTSL 5 BASIC18.76■□□□□ 0.59
FOXA1P55317 AL138781.2-201ENST00000617896 1843 ntBASIC18.76■□□□□ 0.59
FOXA1P55317 CAMKMT-201ENST00000378494 1495 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
FOXA1P55317 KRT15-203ENST00000393976 2394 ntAPPRIS P1 TSL 5 BASIC18.76■□□□□ 0.59
FOXA1P55317 SYBU-232ENST00000533171 2498 ntAPPRIS ALT2 TSL 2 BASIC18.76■□□□□ 0.59
FOXA1P55317 KLHL17-201ENST00000338591 2560 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
FOXA1P55317 SHANK1-203ENST00000391813 4785 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
FOXA1P55317 WDR34-201ENST00000372715 1755 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
FOXA1P55317 SLC1A7-201ENST00000371491 1306 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
FOXA1P55317 ADAMTS19-205ENST00000638972 5089 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
FOXA1P55317 EPOR-201ENST00000222139 2411 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
FOXA1P55317 TMEM191A-208ENST00000450925 1961 ntTSL 2 BASIC18.75■□□□□ 0.59
FOXA1P55317 SIX5-203ENST00000560168 1975 ntTSL 4 BASIC18.75■□□□□ 0.59
FOXA1P55317 AGAP4-201ENST00000311652 2715 ntAPPRIS ALT2 TSL 1 (best) BASIC18.75■□□□□ 0.59
FOXA1P55317 RELA-202ENST00000406246 2700 ntAPPRIS P3 TSL 1 (best) BASIC18.75■□□□□ 0.59
FOXA1P55317 ACTL6B-201ENST00000160382 1537 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
FOXA1P55317 LDLRAD4-211ENST00000587757 2171 ntTSL 2 BASIC18.75■□□□□ 0.59
FOXA1P55317 NEU4-203ENST00000404257 2352 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
FOXA1P55317 P2RY6-203ENST00000393591 1829 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
FOXA1P55317 KRT81-201ENST00000327741 1929 ntAPPRIS P2 TSL 1 (best) BASIC18.75■□□□□ 0.59
FOXA1P55317 COPS9-201ENST00000307266 759 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
FOXA1P55317 PPP1R14A-202ENST00000347262 637 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
FOXA1P55317 HCFC1R1-202ENST00000354679 765 ntTSL 2 BASIC18.75■□□□□ 0.59
FOXA1P55317 HAGLR-207ENST00000452365 661 ntTSL 4 BASIC18.75■□□□□ 0.59
FOXA1P55317 AL356020.1-201ENST00000554235 1076 ntTSL 5 BASIC18.75■□□□□ 0.59
FOXA1P55317 AC009065.4-203ENST00000562838 535 ntTSL 2 BASIC18.75■□□□□ 0.59
FOXA1P55317 AC138028.5-201ENST00000566114 558 ntTSL 5 BASIC18.75■□□□□ 0.59
FOXA1P55317 AC006435.1-201ENST00000571775 1065 ntTSL 5 BASIC18.75■□□□□ 0.59
FOXA1P55317 EPB41L4B-201ENST00000374557 4006 ntAPPRIS ALT2 TSL 1 (best) BASIC18.75■□□□□ 0.59
FOXA1P55317 RABEPK-204ENST00000394125 1466 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
FOXA1P55317 SNX4-201ENST00000251775 2513 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
FOXA1P55317 COX20-203ENST00000411948 2631 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
FOXA1P55317 KCNK4-202ENST00000422670 1697 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
FOXA1P55317 AC126773.2-201ENST00000562172 1682 ntTSL 3 BASIC18.75■□□□□ 0.59
FOXA1P55317 FP475955.4-201ENST00000623131 1990 ntBASIC18.75■□□□□ 0.59
FOXA1P55317 GOSR2-226ENST00000639287 2367 ntTSL 5 BASIC18.75■□□□□ 0.59
FOXA1P55317 AP006587.1-201ENST00000534129 1502 ntBASIC18.74■□□□□ 0.59
FOXA1P55317 PGAM1-201ENST00000334828 1830 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
FOXA1P55317 PYCR1-204ENST00000403172 1811 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
FOXA1P55317 DUSP1-201ENST00000239223 2019 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
FOXA1P55317 LRRC27-203ENST00000368613 2113 ntAPPRIS P3 TSL 1 (best) BASIC18.74■□□□□ 0.59
FOXA1P55317 TMEM155-201ENST00000337677 2313 ntAPPRIS P2 TSL 1 (best) BASIC18.74■□□□□ 0.59
FOXA1P55317 UMOD-202ENST00000396134 2408 ntAPPRIS ALT2 TSL 2 BASIC18.74■□□□□ 0.59
FOXA1P55317 RNF114-201ENST00000244061 2503 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
FOXA1P55317 INPP4A-201ENST00000074304 6752 ntTSL 5 BASIC18.74■□□□□ 0.59
FOXA1P55317 CFAP100-203ENST00000505024 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC18.74■□□□□ 0.59
FOXA1P55317 TFDP2-202ENST00000467072 1853 ntAPPRIS P3 TSL 1 (best) BASIC18.74■□□□□ 0.59
FOXA1P55317 TIMP4-201ENST00000287814 1650 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
FOXA1P55317 RFC2-202ENST00000352131 1576 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
FOXA1P55317 ZNF385C-201ENST00000436535 1572 ntAPPRIS P1 TSL 5 BASIC18.74■□□□□ 0.59
FOXA1P55317 REXO2-201ENST00000265881 1161 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
FOXA1P55317 AC068473.1-201ENST00000317008 1111 ntTSL 2 BASIC18.74■□□□□ 0.59
FOXA1P55317 ZPBP-203ENST00000419417 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC18.74■□□□□ 0.59
FOXA1P55317 AL807752.2-201ENST00000435463 301 ntTSL 3 BASIC18.74■□□□□ 0.59
FOXA1P55317 LMCD1-AS1-204ENST00000446281 932 ntTSL 5 BASIC18.74■□□□□ 0.59
FOXA1P55317 AC080013.1-202ENST00000465477 674 ntTSL 5 BASIC18.74■□□□□ 0.59
FOXA1P55317 CTBP1-AS2-203ENST00000507044 739 ntTSL 3 BASIC18.74■□□□□ 0.59
FOXA1P55317 REXO2-208ENST00000539754 791 ntTSL 2 BASIC18.74■□□□□ 0.59
FOXA1P55317 SEC23A-AS1-201ENST00000557350 500 ntTSL 3 BASIC18.74■□□□□ 0.59
FOXA1P55317 AL138781.1-201ENST00000566567 1274 ntBASIC18.74■□□□□ 0.59
FOXA1P55317 MIR4758-201ENST00000577688 71 ntBASIC18.74■□□□□ 0.59
FOXA1P55317 AC083880.1-201ENST00000608266 535 ntBASIC18.74■□□□□ 0.59
FOXA1P55317 HLA-B-256ENST00000639848 1089 ntBASIC18.74■□□□□ 0.59
FOXA1P55317 UBE2K-201ENST00000261427 5245 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
FOXA1P55317 CPEB2-202ENST00000345451 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC18.74■□□□□ 0.59
FOXA1P55317 C11orf80-214ENST00000532565 1948 ntAPPRIS ALT2 TSL 5 BASIC18.74■□□□□ 0.59
FOXA1P55317 LMF1-212ENST00000568897 1603 ntTSL 5 BASIC18.74■□□□□ 0.59
FOXA1P55317 ZNF510-203ENST00000375231 5616 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
FOXA1P55317 NTMT1-210ENST00000613644 1501 ntAPPRIS P1 TSL 3 BASIC18.74■□□□□ 0.59
FOXA1P55317 MAFF-206ENST00000538320 2458 ntAPPRIS P1 TSL 4 BASIC18.74■□□□□ 0.59
FOXA1P55317 CAV3-201ENST00000343849 1431 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
FOXA1P55317 SHISA7-201ENST00000376325 6033 ntAPPRIS P2 TSL 2 BASIC18.73■□□□□ 0.59
FOXA1P55317 ANKRD18DP-204ENST00000455355 1975 ntBASIC18.73■□□□□ 0.59
FOXA1P55317 GLS-201ENST00000320717 4834 ntAPPRIS P3 TSL 1 (best) BASIC18.73■□□□□ 0.59
FOXA1P55317 TREX2-203ENST00000338525 2116 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
FOXA1P55317 PRR5-ARHGAP8-201ENST00000352766 2043 ntAPPRIS P1 TSL 2 BASIC18.73■□□□□ 0.59
FOXA1P55317 POLR1D-203ENST00000399697 2036 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
FOXA1P55317 LRCH3-207ENST00000441090 2034 ntTSL 2 BASIC18.73■□□□□ 0.59
FOXA1P55317 FAM87B-201ENST00000326734 1947 ntTSL 2 BASIC18.73■□□□□ 0.59
FOXA1P55317 PLIN5-201ENST00000381848 2470 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
FOXA1P55317 ZBTB10-205ENST00000610895 2833 ntAPPRIS ALT2 TSL 2 BASIC18.73■□□□□ 0.59
FOXA1P55317 TAF9-201ENST00000217893 1283 ntAPPRIS P2 TSL 1 (best) BASIC18.73■□□□□ 0.59
FOXA1P55317 AL021707.1-201ENST00000416406 500 ntTSL 3 BASIC18.73■□□□□ 0.59
FOXA1P55317 AC097658.1-201ENST00000475555 843 ntBASIC18.73■□□□□ 0.59
FOXA1P55317 ZNF696-204ENST00000520333 605 ntTSL 5 BASIC18.73■□□□□ 0.59
FOXA1P55317 PNMA6B-201ENST00000538162 1200 ntBASIC18.73■□□□□ 0.59
FOXA1P55317 AL049874.3-201ENST00000557618 868 ntTSL 3 BASIC18.73■□□□□ 0.59
FOXA1P55317 AC027307.1-201ENST00000590252 457 ntTSL 5 BASIC18.73■□□□□ 0.59
FOXA1P55317 CD99-210ENST00000611428 1243 ntAPPRIS ALT2 TSL 1 (best) BASIC18.73■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 21 ms