Protein–RNA interactions for Protein: P02649

APOE, Apolipoprotein E, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
APOEP02649 GABRD-201ENST00000378585 1961 ntAPPRIS P2 TSL 1 (best) BASIC20.31■□□□□ 0.84
APOEP02649 PFKFB3-217ENST00000626882 1965 ntTSL 5 BASIC20.31■□□□□ 0.84
APOEP02649 PDLIM3-212ENST00000620787 2352 ntTSL 4 BASIC20.31■□□□□ 0.84
APOEP02649 MRPS2-201ENST00000241600 1510 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
APOEP02649 RNPEPL1-201ENST00000270357 5658 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
APOEP02649 ACADS-202ENST00000411593 1398 ntTSL 2 BASIC20.31■□□□□ 0.84
APOEP02649 ZNRF1-202ENST00000335325 4620 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
APOEP02649 NR1D2-201ENST00000312521 5258 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
APOEP02649 C19orf66-209ENST00000591813 1481 ntAPPRIS ALT2 TSL 1 (best) BASIC20.3■□□□□ 0.84
APOEP02649 DUT-201ENST00000331200 2147 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
APOEP02649 PML-204ENST00000359928 1726 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
APOEP02649 SDHA-201ENST00000264932 2390 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
APOEP02649 ADAMTS19-201ENST00000274487 5234 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
APOEP02649 SMC5-AS1-201ENST00000594708 1818 ntTSL 2 BASIC20.3■□□□□ 0.84
APOEP02649 HLA-G-201ENST00000360323 1427 ntAPPRIS P2 BASIC20.3■□□□□ 0.84
APOEP02649 KANSL1-218ENST00000638275 5352 ntTSL 5 BASIC20.3■□□□□ 0.84
APOEP02649 PTPRCAP-201ENST00000326294 1292 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
APOEP02649 VKORC1-204ENST00000394971 664 ntTSL 5 BASIC20.3■□□□□ 0.84
APOEP02649 AC027682.2-201ENST00000563083 336 ntTSL 5 BASIC20.3■□□□□ 0.84
APOEP02649 C1QL1P1-201ENST00000568105 661 ntBASIC20.3■□□□□ 0.84
APOEP02649 AP001412.1-201ENST00000608405 714 ntBASIC20.3■□□□□ 0.84
APOEP02649 MTFP1-206ENST00000629597 482 ntTSL 5 BASIC20.3■□□□□ 0.84
APOEP02649 B4GALT1-202ENST00000535206 1535 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
APOEP02649 CSNK1D-203ENST00000392334 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC20.3■□□□□ 0.84
APOEP02649 APTR-204ENST00000440088 2029 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
APOEP02649 MYH7B-201ENST00000262873 6293 ntAPPRIS P2 TSL 1 (best) BASIC20.3■□□□□ 0.84
APOEP02649 PIGQ-206ENST00000422307 2052 ntTSL 3 BASIC20.3■□□□□ 0.84
APOEP02649 TSR1-201ENST00000301364 5188 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
APOEP02649 OGG1-217ENST00000449570 1948 ntTSL 5 BASIC20.29■□□□□ 0.84
APOEP02649 KRT78-201ENST00000304620 1778 ntAPPRIS P3 TSL 1 (best) BASIC20.29■□□□□ 0.84
APOEP02649 THOP1-202ENST00000395212 1877 ntTSL 2 BASIC20.29■□□□□ 0.84
APOEP02649 NKX1-2-201ENST00000451024 3364 ntAPPRIS P1 TSL 5 BASIC20.29■□□□□ 0.84
APOEP02649 UHRF1-203ENST00000615884 2651 ntAPPRIS P1 TSL 2 BASIC20.29■□□□□ 0.84
APOEP02649 LINC01743-201ENST00000366308 964 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
APOEP02649 C1orf50-201ENST00000372525 996 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
APOEP02649 RPS2P55-201ENST00000397318 883 ntBASIC20.29■□□□□ 0.84
APOEP02649 COQ10B-203ENST00000409398 879 ntTSL 3 BASIC20.29■□□□□ 0.84
APOEP02649 SMIM19-201ENST00000414154 793 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
APOEP02649 AP002982.1-201ENST00000492365 877 ntBASIC20.29■□□□□ 0.84
APOEP02649 AC107956.1-201ENST00000494359 873 ntBASIC20.29■□□□□ 0.84
APOEP02649 AC019257.1-201ENST00000517676 557 ntTSL 5 BASIC20.29■□□□□ 0.84
APOEP02649 CAVIN3-203ENST00000530979 957 ntTSL 2 BASIC20.29■□□□□ 0.84
APOEP02649 AC010336.4-201ENST00000595655 438 ntTSL 5 BASIC20.29■□□□□ 0.84
APOEP02649 SLC6A6-208ENST00000621751 1252 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
APOEP02649 PNMA8B-202ENST00000599531 5308 ntAPPRIS P1 BASIC20.29■□□□□ 0.84
APOEP02649 CDK13-202ENST00000340829 5066 ntAPPRIS ALT1 TSL 1 (best) BASIC20.29■□□□□ 0.84
APOEP02649 CFP-201ENST00000247153 1713 ntAPPRIS P2 TSL 5 BASIC20.29■□□□□ 0.84
APOEP02649 KLC2-204ENST00000394067 2898 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
APOEP02649 PQLC2-202ENST00000375155 1805 ntAPPRIS P1 TSL 2 BASIC20.29■□□□□ 0.84
APOEP02649 HOXA11-201ENST00000006015 2295 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
APOEP02649 ILKAP-201ENST00000254654 1490 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
APOEP02649 MOB3C-202ENST00000319928 2822 ntAPPRIS P1 TSL 2 BASIC20.29■□□□□ 0.84
APOEP02649 PSMD8-201ENST00000215071 1553 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
APOEP02649 ACOT2-204ENST00000613168 1553 ntAPPRIS P5 TSL 1 (best) BASIC20.29■□□□□ 0.84
APOEP02649 CADPS-201ENST00000283269 4591 ntAPPRIS P4 TSL 1 (best) BASIC20.29■□□□□ 0.84
APOEP02649 TMEM132A-202ENST00000453848 3346 ntAPPRIS ALT2 TSL 1 (best) BASIC20.29■□□□□ 0.84
APOEP02649 AC116562.4-201ENST00000641316 2276 ntBASIC20.28■□□□□ 0.84
APOEP02649 NETO1-207ENST00000583169 2357 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
APOEP02649 FAM57B-204ENST00000564806 1710 ntTSL 2 BASIC20.28■□□□□ 0.84
APOEP02649 MARCH8-201ENST00000319836 5272 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
APOEP02649 TRMU-201ENST00000290846 1940 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
APOEP02649 TSPY8-201ENST00000287721 1161 ntAPPRIS P5 TSL 1 (best) BASIC20.28■□□□□ 0.84
APOEP02649 AK2-201ENST00000354858 1021 ntAPPRIS P4 TSL 1 (best) BASIC20.28■□□□□ 0.84
APOEP02649 TSPY10-201ENST00000428845 1161 ntAPPRIS P5 TSL 1 (best) BASIC20.28■□□□□ 0.84
APOEP02649 TSPY3-203ENST00000457222 1161 ntAPPRIS P5 TSL 1 (best) BASIC20.28■□□□□ 0.84
APOEP02649 AC108693.2-201ENST00000492981 303 ntTSL 3 BASIC20.28■□□□□ 0.84
APOEP02649 ADAMTS19-AS1-201ENST00000502827 786 ntTSL 4 BASIC20.28■□□□□ 0.84
APOEP02649 MOK-228ENST00000523231 1114 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
APOEP02649 AC015712.2-203ENST00000560461 688 ntTSL 3 BASIC20.28■□□□□ 0.84
APOEP02649 AC233702.5-201ENST00000584107 538 ntBASIC20.28■□□□□ 0.84
APOEP02649 Z99916.2-201ENST00000604037 246 ntBASIC20.28■□□□□ 0.84
APOEP02649 AC004706.3-201ENST00000634558 1009 ntTSL 5 BASIC20.28■□□□□ 0.84
APOEP02649 NRXN1-208ENST00000405472 5724 ntAPPRIS ALT2 TSL 5 BASIC20.28■□□□□ 0.84
APOEP02649 SPNS1-201ENST00000311008 2208 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
APOEP02649 DMKN-207ENST00000419602 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
APOEP02649 FAM131C-201ENST00000375662 1695 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
APOEP02649 IL17RC-203ENST00000403601 2388 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
APOEP02649 PSKH2-201ENST00000276616 1322 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
APOEP02649 TAPT1-201ENST00000405303 4591 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
APOEP02649 SHANK3-203ENST00000445220 5175 ntAPPRIS ALT2 TSL 5 BASIC20.27■□□□□ 0.84
APOEP02649 WBP2-213ENST00000590221 1745 ntAPPRIS ALT1 TSL 3 BASIC20.27■□□□□ 0.84
APOEP02649 CRTC1-204ENST00000601916 1834 ntTSL 5 BASIC20.27■□□□□ 0.84
APOEP02649 KRT16P3-203ENST00000580621 1939 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
APOEP02649 NRL-206ENST00000561028 2103 ntAPPRIS P1 TSL 2 BASIC20.27■□□□□ 0.84
APOEP02649 CRMP1-201ENST00000324989 3146 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
APOEP02649 TMEM8A-204ENST00000431232 3691 ntAPPRIS P2 TSL 1 (best) BASIC20.27■□□□□ 0.84
APOEP02649 CNEP1R1-203ENST00000458059 2965 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
APOEP02649 SLC6A11-202ENST00000454147 2794 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
APOEP02649 ZSCAN1-201ENST00000282326 2054 ntAPPRIS P1 TSL 2 BASIC20.27■□□□□ 0.84
APOEP02649 SLC1A6-202ENST00000430939 1794 ntTSL 2 BASIC20.27■□□□□ 0.84
APOEP02649 TMPRSS6-207ENST00000442782 1695 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
APOEP02649 SGCE-207ENST00000447873 1597 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
APOEP02649 VSTM2B-201ENST00000335523 1488 ntAPPRIS P1 TSL 5 BASIC20.27■□□□□ 0.84
APOEP02649 CYB561-204ENST00000448884 1496 ntTSL 2 BASIC20.27■□□□□ 0.84
APOEP02649 CEMP1-202ENST00000567119 1374 ntAPPRIS P2 BASIC20.27■□□□□ 0.84
APOEP02649 NKAIN4-201ENST00000370307 793 ntTSL 5 BASIC20.27■□□□□ 0.84
APOEP02649 MDFI-202ENST00000373050 809 ntTSL 2 BASIC20.27■□□□□ 0.84
APOEP02649 ABCC5-211ENST00000446941 883 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
APOEP02649 Z98884.1-201ENST00000451646 830 ntTSL 3 BASIC20.27■□□□□ 0.84
APOEP02649 WDR86-AS1-203ENST00000480632 704 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 34.2 ms