Protein–RNA interactions for Protein: Q9UGP4

LIMD1, LIM domain-containing protein 1, humanhuman

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1Q9UGP4 LINC00094-201ENST00000432807 2300 ntAPPRIS ALT2 TSL 2 BASIC20.26■□□□□ 0.83
LIMD1Q9UGP4 NRN1-203ENST00000616243 1556 ntAPPRIS P1 TSL 4 BASIC20.26■□□□□ 0.83
LIMD1Q9UGP4 TMEM25-203ENST00000354284 1456 ntTSL 2 BASIC20.26■□□□□ 0.83
LIMD1Q9UGP4 SETD6-202ENST00000310682 2042 ntAPPRIS P3 TSL 2 BASIC20.26■□□□□ 0.83
LIMD1Q9UGP4 CRELD2-201ENST00000328268 1357 ntAPPRIS P3 TSL 1 (best) BASIC20.26■□□□□ 0.83
LIMD1Q9UGP4 CCK-201ENST00000334681 830 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
LIMD1Q9UGP4 KCNMB3-202ENST00000349697 1228 ntAPPRIS P1 TSL 5 BASIC20.26■□□□□ 0.83
LIMD1Q9UGP4 SMIM19-202ENST00000416469 691 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
LIMD1Q9UGP4 AC037459.1-202ENST00000430850 531 ntAPPRIS P1 TSL 4 BASIC20.26■□□□□ 0.83
LIMD1Q9UGP4 CBR1-203ENST00000439427 1024 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
LIMD1Q9UGP4 AL359075.1-203ENST00000462729 1002 ntBASIC20.26■□□□□ 0.83
LIMD1Q9UGP4 CYB561-214ENST00000582034 1193 ntTSL 2 BASIC20.26■□□□□ 0.83
LIMD1Q9UGP4 TMC7-205ENST00000569532 2738 ntTSL 2 BASIC20.26■□□□□ 0.83
LIMD1Q9UGP4 ACADVL-202ENST00000350303 2191 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
LIMD1Q9UGP4 CLK3-202ENST00000395066 2621 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
LIMD1Q9UGP4 CPNE9-203ENST00000383832 2068 ntAPPRIS P1 TSL 5 BASIC20.26■□□□□ 0.83
LIMD1Q9UGP4 SNAPC2-201ENST00000221573 1542 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
LIMD1Q9UGP4 FGF7P6-201ENST00000377614 1890 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
LIMD1Q9UGP4 BX664615.2-202ENST00000639056 1888 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
LIMD1Q9UGP4 PLD6-201ENST00000321560 2560 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
LIMD1Q9UGP4 RGS20-202ENST00000297313 2104 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
LIMD1Q9UGP4 AOC1-202ENST00000416793 2453 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
LIMD1Q9UGP4 HTRA3-202ENST00000382512 2023 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
LIMD1Q9UGP4 RASSF1-203ENST00000359365 1923 ntAPPRIS ALT1 TSL 1 (best) BASIC20.25■□□□□ 0.83
LIMD1Q9UGP4 TSGA10IP-203ENST00000532620 1925 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
LIMD1Q9UGP4 TBC1D10C-201ENST00000312390 1497 ntTSL 5 BASIC20.25■□□□□ 0.83
LIMD1Q9UGP4 MAP7-206ENST00000611373 2317 ntAPPRIS ALT2 TSL 5 BASIC20.25■□□□□ 0.83
LIMD1Q9UGP4 FEM1AP4-201ENST00000443167 1987 ntBASIC20.25■□□□□ 0.83
LIMD1Q9UGP4 EPDR1-201ENST00000199448 2599 ntAPPRIS P3 TSL 1 (best) BASIC20.25■□□□□ 0.83
LIMD1Q9UGP4 GPR32-201ENST00000270590 1269 ntAPPRIS P1 BASIC20.25■□□□□ 0.83
LIMD1Q9UGP4 PTPA-216ENST00000432651 857 ntTSL 2 BASIC20.25■□□□□ 0.83
LIMD1Q9UGP4 SNHG7-203ENST00000436596 509 ntTSL 2 BASIC20.25■□□□□ 0.83
LIMD1Q9UGP4 HCG4P8-203ENST00000443049 980 ntBASIC20.25■□□□□ 0.83
LIMD1Q9UGP4 HOMER2P1-201ENST00000455653 964 ntBASIC20.25■□□□□ 0.83
LIMD1Q9UGP4 NDUFV2-207ENST00000497577 868 ntTSL 2 BASIC20.25■□□□□ 0.83
LIMD1Q9UGP4 CHRNB1-207ENST00000575379 1095 ntTSL 2 BASIC20.25■□□□□ 0.83
LIMD1Q9UGP4 UQCR11-201ENST00000585671 753 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
LIMD1Q9UGP4 AC006504.5-207ENST00000586220 487 ntTSL 2 BASIC20.25■□□□□ 0.83
LIMD1Q9UGP4 YIPF2-209ENST00000590329 958 ntTSL 5 BASIC20.25■□□□□ 0.83
LIMD1Q9UGP4 ZNF667-AS1-208ENST00000594783 475 ntTSL 3 BASIC20.25■□□□□ 0.83
LIMD1Q9UGP4 AC012366.1-201ENST00000615411 473 ntTSL 5 BASIC20.25■□□□□ 0.83
LIMD1Q9UGP4 ALKBH6-213ENST00000486389 1525 ntTSL 3 BASIC20.25■□□□□ 0.83
LIMD1Q9UGP4 CRACR2B-207ENST00000528542 1792 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
LIMD1Q9UGP4 ZNF497-202ENST00000425453 2261 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
LIMD1Q9UGP4 KRT16P6-202ENST00000425692 1426 ntBASIC20.25■□□□□ 0.83
LIMD1Q9UGP4 MMP17-201ENST00000360564 2411 ntAPPRIS P2 TSL 1 (best) BASIC20.25■□□□□ 0.83
LIMD1Q9UGP4 SSBP3-216ENST00000610401 3168 ntTSL 5 BASIC20.25■□□□□ 0.83
LIMD1Q9UGP4 STOML1-209ENST00000564777 1849 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
LIMD1Q9UGP4 SMARCD2-203ENST00000448276 2716 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
LIMD1Q9UGP4 CENPU-201ENST00000281453 1998 ntAPPRIS P2 TSL 1 (best) BASIC20.25■□□□□ 0.83
LIMD1Q9UGP4 SYTL1-211ENST00000618673 1712 ntTSL 5 BASIC20.24■□□□□ 0.83
LIMD1Q9UGP4 MAPT-203ENST00000340799 5724 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
LIMD1Q9UGP4 SLC43A3-225ENST00000533524 1879 ntAPPRIS ALT2 TSL 2 BASIC20.24■□□□□ 0.83
LIMD1Q9UGP4 ABLIM2-204ENST00000407564 2291 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
LIMD1Q9UGP4 ASNS-206ENST00000437628 1638 ntTSL 2 BASIC20.24■□□□□ 0.83
LIMD1Q9UGP4 EXOC3L2-202ENST00000413988 2964 ntAPPRIS P1 TSL 5 BASIC20.24■□□□□ 0.83
LIMD1Q9UGP4 GLT1D1-204ENST00000442111 2995 ntAPPRIS P1 TSL 5 BASIC20.24■□□□□ 0.83
LIMD1Q9UGP4 OCIAD2-201ENST00000273860 636 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
LIMD1Q9UGP4 KRTCAP3-201ENST00000288873 872 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
LIMD1Q9UGP4 HLA-DRB1-201ENST00000360004 1229 ntAPPRIS P1 BASIC20.24■□□□□ 0.83
LIMD1Q9UGP4 S100A16-203ENST00000368705 956 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
LIMD1Q9UGP4 ROMO1-202ENST00000374072 350 ntTSL 5 BASIC20.24■□□□□ 0.83
LIMD1Q9UGP4 HOXA9-202ENST00000396345 797 ntTSL 2 BASIC20.24■□□□□ 0.83
LIMD1Q9UGP4 TSPY17P-201ENST00000450329 467 ntBASIC20.24■□□□□ 0.83
LIMD1Q9UGP4 AL671277.2-201ENST00000458060 996 ntBASIC20.24■□□□□ 0.83
LIMD1Q9UGP4 AC004080.5-201ENST00000498652 368 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
LIMD1Q9UGP4 AF250324.1-201ENST00000506276 703 ntTSL 3 BASIC20.24■□□□□ 0.83
LIMD1Q9UGP4 AP000777.3-201ENST00000538705 491 ntTSL 3 BASIC20.24■□□□□ 0.83
LIMD1Q9UGP4 AP1S2-206ENST00000545766 576 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
LIMD1Q9UGP4 AL023803.3-201ENST00000615559 522 ntBASIC20.24■□□□□ 0.83
LIMD1Q9UGP4 C10orf142-201ENST00000619243 1110 ntAPPRIS P2 TSL 2 BASIC20.24■□□□□ 0.83
LIMD1Q9UGP4 OCIAD2-210ENST00000620187 697 ntTSL 3 BASIC20.24■□□□□ 0.83
LIMD1Q9UGP4 PITPNB-211ENST00000634017 1017 ntAPPRIS ALT1 TSL 2 BASIC20.24■□□□□ 0.83
LIMD1Q9UGP4 ENTPD6-203ENST00000376652 2750 ntAPPRIS P3 TSL 1 (best) BASIC20.24■□□□□ 0.83
LIMD1Q9UGP4 ANKRD2-202ENST00000307518 1449 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
LIMD1Q9UGP4 HDDC3-202ENST00000394272 1880 ntAPPRIS P1 TSL 2 BASIC20.24■□□□□ 0.83
LIMD1Q9UGP4 ABLIM2-205ENST00000428004 2573 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
LIMD1Q9UGP4 DNASE1L2-201ENST00000320700 1326 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
LIMD1Q9UGP4 DPP3P2-201ENST00000416030 1696 ntBASIC20.23■□□□□ 0.83
LIMD1Q9UGP4 PMPCA-203ENST00000399219 1987 ntTSL 2 BASIC20.23■□□□□ 0.83
LIMD1Q9UGP4 TMEM160-201ENST00000253047 663 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
LIMD1Q9UGP4 SAE1-201ENST00000270225 2049 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
LIMD1Q9UGP4 PYDC1-201ENST00000302964 813 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
LIMD1Q9UGP4 CYP2D6-201ENST00000359033 1433 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
LIMD1Q9UGP4 TREX2-206ENST00000370232 1864 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
LIMD1Q9UGP4 IMP3-202ENST00000403490 1237 ntAPPRIS P1 BASIC20.23■□□□□ 0.83
LIMD1Q9UGP4 ACY1-206ENST00000476351 1409 ntTSL 3 BASIC20.23■□□□□ 0.83
LIMD1Q9UGP4 TPGS2-221ENST00000614939 1268 ntTSL 4 BASIC20.23■□□□□ 0.83
LIMD1Q9UGP4 SETD3-209ENST00000630307 1281 ntTSL 5 BASIC20.23■□□□□ 0.83
LIMD1Q9UGP4 PMS1-222ENST00000639501 2506 ntTSL 5 BASIC20.23■□□□□ 0.83
LIMD1Q9UGP4 HHIPL1-202ENST00000357223 2241 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
LIMD1Q9UGP4 BCAP29-202ENST00000379117 1946 ntAPPRIS P1 TSL 5 BASIC20.23■□□□□ 0.83
LIMD1Q9UGP4 BPIFB3-201ENST00000375494 1454 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
LIMD1Q9UGP4 ERLEC1-202ENST00000378239 2271 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
LIMD1Q9UGP4 PYCR1-204ENST00000403172 1811 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
LIMD1Q9UGP4 NRXN2-201ENST00000265459 6621 ntAPPRIS P3 TSL 5 BASIC20.22■□□□□ 0.83
LIMD1Q9UGP4 UNC93B1-201ENST00000227471 2316 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
LIMD1Q9UGP4 BSCL2-207ENST00000407022 1516 ntAPPRIS P3 TSL 1 (best) BASIC20.22■□□□□ 0.83
LIMD1Q9UGP4 RASEF-202ENST00000376447 5576 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
LIMD1Q9UGP4 ELP5-204ENST00000396628 1423 ntAPPRIS P2 TSL 1 (best) BASIC20.22■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 19.2 ms