Protein–RNA interactions for Protein: Q9HD45

TM9SF3, Transmembrane 9 superfamily member 3, humanhuman

Predictions only

Length 589 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TM9SF3Q9HD45 RNF146-204ENST00000476956 884 ntTSL 2 BASIC19.43■□□□□ 0.7
TM9SF3Q9HD45 ZNF706-204ENST00000518336 501 ntAPPRIS P1 TSL 4 BASIC19.43■□□□□ 0.7
TM9SF3Q9HD45 GOLGA2P7-203ENST00000557881 896 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
TM9SF3Q9HD45 AC103746.1-201ENST00000617440 1133 ntTSL 3 BASIC19.43■□□□□ 0.7
TM9SF3Q9HD45 GOLGA2P10-205ENST00000618267 983 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
TM9SF3Q9HD45 ISOC2-201ENST00000085068 1122 ntTSL 2 BASIC19.43■□□□□ 0.7
TM9SF3Q9HD45 TRABD2A-201ENST00000335459 1844 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
TM9SF3Q9HD45 SLC22A23-205ENST00000436008 6641 ntAPPRIS ALT2 TSL 5 BASIC19.43■□□□□ 0.7
TM9SF3Q9HD45 IQCJ-SCHIP1-204ENST00000485419 2445 ntAPPRIS ALT2 TSL 2 BASIC19.43■□□□□ 0.7
TM9SF3Q9HD45 PHGDH-210ENST00000641115 1638 ntBASIC19.43■□□□□ 0.7
TM9SF3Q9HD45 TMPRSS5-212ENST00000545579 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC19.43■□□□□ 0.7
TM9SF3Q9HD45 PRSS50-202ENST00000315170 1372 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
TM9SF3Q9HD45 MAPT-203ENST00000340799 5724 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
TM9SF3Q9HD45 KCTD1-202ENST00000408011 2103 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
TM9SF3Q9HD45 HOXD11-201ENST00000249504 1533 ntAPPRIS P1 TSL 3 BASIC19.42■□□□□ 0.7
TM9SF3Q9HD45 SYT7-208ENST00000542670 1887 ntTSL 5 BASIC19.42■□□□□ 0.7
TM9SF3Q9HD45 ULK2-202ENST00000395544 6010 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
TM9SF3Q9HD45 TSPY14P-201ENST00000303979 915 ntBASIC19.42■□□□□ 0.7
TM9SF3Q9HD45 DUSP23-203ENST00000368109 729 ntAPPRIS P1 TSL 2 BASIC19.42■□□□□ 0.7
TM9SF3Q9HD45 RXFP4-201ENST00000368318 1240 ntAPPRIS P1 BASIC19.42■□□□□ 0.7
TM9SF3Q9HD45 LIN28AP1-201ENST00000429574 405 ntBASIC19.42■□□□□ 0.7
TM9SF3Q9HD45 ECEL1P2-202ENST00000465689 757 ntBASIC19.42■□□□□ 0.7
TM9SF3Q9HD45 NDUFS3-213ENST00000534716 1263 ntTSL 2 BASIC19.42■□□□□ 0.7
TM9SF3Q9HD45 TARBP2-220ENST00000552857 916 ntTSL 5 BASIC19.42■□□□□ 0.7
TM9SF3Q9HD45 CALM3-208ENST00000596362 1203 ntAPPRIS P1 TSL 2 BASIC19.42■□□□□ 0.7
TM9SF3Q9HD45 LACTB-202ENST00000413507 2978 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
TM9SF3Q9HD45 TDRD10-202ENST00000368482 2331 ntAPPRIS P3 TSL 1 (best) BASIC19.42■□□□□ 0.7
TM9SF3Q9HD45 TMED4-203ENST00000457408 2322 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
TM9SF3Q9HD45 DXO-202ENST00000375349 1667 ntAPPRIS P1 TSL 5 BASIC19.42■□□□□ 0.7
TM9SF3Q9HD45 IL17RC-202ENST00000383812 2384 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
TM9SF3Q9HD45 NEU4-203ENST00000404257 2352 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
TM9SF3Q9HD45 HSD11B1L-204ENST00000411793 1362 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
TM9SF3Q9HD45 CCDC91-207ENST00000539107 2440 ntTSL 5 BASIC19.42■□□□□ 0.7
TM9SF3Q9HD45 SHB-201ENST00000377707 2783 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
TM9SF3Q9HD45 RUFY3-203ENST00000417478 2143 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
TM9SF3Q9HD45 PON1-201ENST00000222381 2568 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
TM9SF3Q9HD45 SMIM10L2A-201ENST00000417443 5230 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
TM9SF3Q9HD45 RNF38-204ENST00000357058 5254 ntAPPRIS P1 TSL 5 BASIC19.41■□□□□ 0.7
TM9SF3Q9HD45 IMMP2L-202ENST00000405709 1522 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
TM9SF3Q9HD45 SLC16A5-201ENST00000329783 1934 ntAPPRIS P2 TSL 1 (best) BASIC19.41■□□□□ 0.7
TM9SF3Q9HD45 C5orf17-202ENST00000512559 1984 ntTSL 2 BASIC19.41■□□□□ 0.7
TM9SF3Q9HD45 SLC35A3-222ENST00000640715 1989 ntTSL 5 BASIC19.41■□□□□ 0.7
TM9SF3Q9HD45 FSTL3-201ENST00000166139 2542 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
TM9SF3Q9HD45 NT5C1A-201ENST00000235628 1107 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
TM9SF3Q9HD45 PAX3-201ENST00000258387 958 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
TM9SF3Q9HD45 MDK-201ENST00000359803 985 ntAPPRIS P2 TSL 2 BASIC19.41■□□□□ 0.7
TM9SF3Q9HD45 TMEM53-201ENST00000372235 890 ntTSL 2 BASIC19.41■□□□□ 0.7
TM9SF3Q9HD45 C6orf48-206ENST00000375641 602 ntAPPRIS P1 TSL 2 BASIC19.41■□□□□ 0.7
TM9SF3Q9HD45 ATP5G1P1-201ENST00000448724 379 ntBASIC19.41■□□□□ 0.7
TM9SF3Q9HD45 LY6E-214ENST00000522971 857 ntAPPRIS P2 TSL 2 BASIC19.41■□□□□ 0.7
TM9SF3Q9HD45 AC010422.3-201ENST00000597692 838 ntAPPRIS P1 TSL 2 BASIC19.41■□□□□ 0.7
TM9SF3Q9HD45 SCPEP1-216ENST00000631024 444 ntTSL 5 BASIC19.41■□□□□ 0.7
TM9SF3Q9HD45 FAM129C-212ENST00000601861 2180 ntAPPRIS ALT2 TSL 2 BASIC19.41■□□□□ 0.7
TM9SF3Q9HD45 GOLGA2P10-204ENST00000618004 1349 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
TM9SF3Q9HD45 FEZF1-202ENST00000427185 1368 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
TM9SF3Q9HD45 GPBAR1-202ENST00000519574 1382 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
TM9SF3Q9HD45 TRAK2-202ENST00000430254 1436 ntTSL 2 BASIC19.41■□□□□ 0.7
TM9SF3Q9HD45 HPS6-201ENST00000299238 2649 ntAPPRIS P1 BASIC19.4■□□□□ 0.7
TM9SF3Q9HD45 OGG1-202ENST00000302008 2191 ntAPPRIS ALT2 TSL 5 BASIC19.4■□□□□ 0.7
TM9SF3Q9HD45 VSX1-202ENST00000376709 2192 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
TM9SF3Q9HD45 DUSP15-209ENST00000486996 1651 ntTSL 2 BASIC19.4■□□□□ 0.7
TM9SF3Q9HD45 ZIM2-208ENST00000629319 2253 ntAPPRIS P1 TSL 5 BASIC19.4■□□□□ 0.7
TM9SF3Q9HD45 NRM-203ENST00000376421 1734 ntAPPRIS P2 TSL 1 (best) BASIC19.4■□□□□ 0.7
TM9SF3Q9HD45 USP21-203ENST00000368002 2342 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
TM9SF3Q9HD45 RNF224-201ENST00000445101 1798 ntAPPRIS P1 TSL 3 BASIC19.4■□□□□ 0.7
TM9SF3Q9HD45 GNA14-201ENST00000341700 2482 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
TM9SF3Q9HD45 ADAMTS10-205ENST00000595838 2458 ntTSL 2 BASIC19.4■□□□□ 0.7
TM9SF3Q9HD45 HRAS-201ENST00000311189 894 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
TM9SF3Q9HD45 HMGB3P22-201ENST00000442010 597 ntTSL 2 BASIC19.4■□□□□ 0.7
TM9SF3Q9HD45 NME6-209ENST00000442597 757 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
TM9SF3Q9HD45 C1orf52-203ENST00000471115 1219 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
TM9SF3Q9HD45 CHAC1-203ENST00000487220 853 ntTSL 3 BASIC19.4■□□□□ 0.7
TM9SF3Q9HD45 NTF6B-201ENST00000591913 560 ntBASIC19.4■□□□□ 0.7
TM9SF3Q9HD45 CORO1B-202ENST00000393893 1931 ntAPPRIS P1 TSL 5 BASIC19.4■□□□□ 0.7
TM9SF3Q9HD45 CTU2-210ENST00000567949 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
TM9SF3Q9HD45 CTDP1-208ENST00000613122 5866 ntAPPRIS P3 TSL 1 (best) BASIC19.4■□□□□ 0.7
TM9SF3Q9HD45 TAF4-201ENST00000252996 4628 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
TM9SF3Q9HD45 HOXD12-202ENST00000406506 1318 ntAPPRIS P1 TSL 3 BASIC19.4■□□□□ 0.7
TM9SF3Q9HD45 INSM1-201ENST00000310227 2829 ntAPPRIS P1 BASIC19.4■□□□□ 0.7
TM9SF3Q9HD45 GNA15-201ENST00000262958 2133 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
TM9SF3Q9HD45 SPHK1-203ENST00000545180 2238 ntAPPRIS P3 TSL 2 BASIC19.4■□□□□ 0.7
TM9SF3Q9HD45 SLC27A4-202ENST00000372870 1557 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
TM9SF3Q9HD45 E4F1-201ENST00000301727 2573 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
TM9SF3Q9HD45 TMEM230-207ENST00000379286 1735 ntAPPRIS P1 TSL 2 BASIC19.39■□□□□ 0.7
TM9SF3Q9HD45 PDCD2-204ENST00000453163 2657 ntTSL 1 (best) BASIC19.39■□□□□ 0.7
TM9SF3Q9HD45 ESR2-212ENST00000556275 2695 ntTSL 2 BASIC19.39■□□□□ 0.7
TM9SF3Q9HD45 CIRBP-225ENST00000589710 1835 ntTSL 2 BASIC19.39■□□□□ 0.7
TM9SF3Q9HD45 NEU4-205ENST00000407683 2273 ntAPPRIS P1 TSL 2 BASIC19.39■□□□□ 0.69
TM9SF3Q9HD45 TRPV6-209ENST00000638686 2298 ntAPPRIS P2 TSL 1 (best) BASIC19.39■□□□□ 0.69
TM9SF3Q9HD45 PMVK-201ENST00000368467 1280 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
TM9SF3Q9HD45 SLC25A1P4-201ENST00000567977 778 ntBASIC19.39■□□□□ 0.69
TM9SF3Q9HD45 PSMD8-210ENST00000620216 1538 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
TM9SF3Q9HD45 AR-204ENST00000504326 3615 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
TM9SF3Q9HD45 SNX32-201ENST00000308342 2003 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
TM9SF3Q9HD45 C19orf66-201ENST00000253110 2117 ntAPPRIS P3 TSL 2 BASIC19.39■□□□□ 0.69
TM9SF3Q9HD45 WDR4-202ENST00000398208 2122 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
TM9SF3Q9HD45 EXOC3L2-201ENST00000252482 1230 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
TM9SF3Q9HD45 HS3ST3A1-201ENST00000284110 2527 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
TM9SF3Q9HD45 NUDT8-201ENST00000301490 809 ntAPPRIS P3 TSL 1 (best) BASIC19.38■□□□□ 0.69
TM9SF3Q9HD45 ZBTB7A-201ENST00000322357 5422 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 26.5 ms