Protein–RNA interactions for Protein: Q9HD42

CHMP1A, Charged multivesicular body protein 1a, humanhuman

Predicted RBP Predictions only

Length 196 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1AQ9HD42 AC068385.1-201ENST00000533218 409 ntTSL 3 BASIC16.7■□□□□ 0.26
CHMP1AQ9HD42 RPL17-204ENST00000579248 790 ntAPPRIS P1 TSL 2 BASIC16.7■□□□□ 0.26
CHMP1AQ9HD42 RPS15-206ENST00000589656 473 ntAPPRIS ALT1 TSL 5 BASIC16.7■□□□□ 0.26
CHMP1AQ9HD42 H2AFB3-201ENST00000615853 591 ntAPPRIS P1 BASIC16.7■□□□□ 0.26
CHMP1AQ9HD42 CBX1-202ENST00000393408 2422 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
CHMP1AQ9HD42 HDAC1-201ENST00000373548 2124 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
CHMP1AQ9HD42 MARCH1-203ENST00000503008 5877 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
CHMP1AQ9HD42 GOLGA4-212ENST00000617480 1545 ntTSL 5 BASIC16.7■□□□□ 0.26
CHMP1AQ9HD42 PCCA-203ENST00000376286 2481 ntTSL 2 BASIC16.7■□□□□ 0.26
CHMP1AQ9HD42 KRT8P20-201ENST00000423953 1409 ntBASIC16.7■□□□□ 0.26
CHMP1AQ9HD42 FAR2P2-204ENST00000424873 2070 ntTSL 2 BASIC16.69■□□□□ 0.26
CHMP1AQ9HD42 TH-203ENST00000352909 1889 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
CHMP1AQ9HD42 TH-205ENST00000381175 1898 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
CHMP1AQ9HD42 CRAMP1-202ENST00000397412 7772 ntAPPRIS P1 TSL 5 BASIC16.69■□□□□ 0.26
CHMP1AQ9HD42 LRRC27-203ENST00000368613 2113 ntAPPRIS P3 TSL 1 (best) BASIC16.69■□□□□ 0.26
CHMP1AQ9HD42 MAST1-208ENST00000591495 1496 ntTSL 5 BASIC16.69■□□□□ 0.26
CHMP1AQ9HD42 B4GALT2-201ENST00000309519 2004 ntTSL 2 BASIC16.69■□□□□ 0.26
CHMP1AQ9HD42 CAMKK1-202ENST00000348335 3563 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
CHMP1AQ9HD42 KRT19-201ENST00000361566 1390 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
CHMP1AQ9HD42 HSD11B1L-204ENST00000411793 1362 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
CHMP1AQ9HD42 SAC3D1-205ENST00000531072 1362 ntAPPRIS P1 TSL 2 BASIC16.69■□□□□ 0.26
CHMP1AQ9HD42 DDX42-216ENST00000583590 4148 ntAPPRIS P1 TSL 5 BASIC16.69■□□□□ 0.26
CHMP1AQ9HD42 MPRIP-203ENST00000395806 527 ntTSL 3 BASIC16.69■□□□□ 0.26
CHMP1AQ9HD42 ARL6IP4-205ENST00000412505 818 ntTSL 5 BASIC16.69■□□□□ 0.26
CHMP1AQ9HD42 CENPVL3-201ENST00000417339 864 ntAPPRIS P1 BASIC16.69■□□□□ 0.26
CHMP1AQ9HD42 UQCRFS1P1-201ENST00000435169 820 ntBASIC16.69■□□□□ 0.26
CHMP1AQ9HD42 ZNF717-203ENST00000477374 1169 ntTSL 2 BASIC16.69■□□□□ 0.26
CHMP1AQ9HD42 AL031963.3-201ENST00000606441 850 ntBASIC16.69■□□□□ 0.26
CHMP1AQ9HD42 KRT6C-201ENST00000252250 2289 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
CHMP1AQ9HD42 KRT6B-201ENST00000252252 2282 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
CHMP1AQ9HD42 NDRG2-215ENST00000553503 2162 ntAPPRIS ALT1 TSL 1 (best) BASIC16.69■□□□□ 0.26
CHMP1AQ9HD42 FBXL3-201ENST00000355619 3503 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
CHMP1AQ9HD42 LDHD-201ENST00000300051 2067 ntAPPRIS P3 TSL 1 (best) BASIC16.69■□□□□ 0.26
CHMP1AQ9HD42 AC069544.2-201ENST00000640019 2528 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
CHMP1AQ9HD42 SLC35F3-201ENST00000366617 2762 ntAPPRIS ALT1 TSL 1 (best) BASIC16.69■□□□□ 0.26
CHMP1AQ9HD42 LRWD1-201ENST00000292616 2215 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
CHMP1AQ9HD42 OGG1-203ENST00000302036 2220 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
CHMP1AQ9HD42 USP7-201ENST00000344836 5412 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
CHMP1AQ9HD42 TREX1-205ENST00000625293 1783 ntBASIC16.69■□□□□ 0.26
CHMP1AQ9HD42 TSPAN3-201ENST00000267970 6467 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
CHMP1AQ9HD42 ST3GAL3-201ENST00000262915 2470 ntTSL 5 BASIC16.69■□□□□ 0.26
CHMP1AQ9HD42 LMAN1L-202ENST00000379709 1699 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
CHMP1AQ9HD42 ZMYND11-210ENST00000403354 1664 ntTSL 5 BASIC16.69■□□□□ 0.26
CHMP1AQ9HD42 SEPT6-202ENST00000354228 1576 ntAPPRIS P4 TSL 1 (best) BASIC16.68■□□□□ 0.26
CHMP1AQ9HD42 RBM14-RBM4-201ENST00000412278 1566 ntAPPRIS P1 TSL 2 BASIC16.68■□□□□ 0.26
CHMP1AQ9HD42 CBR1-205ENST00000530908 1924 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
CHMP1AQ9HD42 PUF60-202ENST00000349157 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC16.68■□□□□ 0.26
CHMP1AQ9HD42 ESX1-201ENST00000372588 1495 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
CHMP1AQ9HD42 FAM57B-204ENST00000564806 1710 ntTSL 2 BASIC16.68■□□□□ 0.26
CHMP1AQ9HD42 STX18-205ENST00000505286 1380 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
CHMP1AQ9HD42 ASCC2-202ENST00000397771 2823 ntAPPRIS P1 TSL 5 BASIC16.68■□□□□ 0.26
CHMP1AQ9HD42 KCNMA1-261ENST00000639486 8850 ntAPPRIS ALT2 TSL 5 BASIC16.68■□□□□ 0.26
CHMP1AQ9HD42 Z82202.1-201ENST00000623446 1880 ntBASIC16.68■□□□□ 0.26
CHMP1AQ9HD42 WDR25-201ENST00000335290 2123 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
CHMP1AQ9HD42 RBP4-201ENST00000371464 1068 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
CHMP1AQ9HD42 HLA-G-202ENST00000376815 851 ntBASIC16.68■□□□□ 0.26
CHMP1AQ9HD42 HLA-G-203ENST00000376818 1127 ntBASIC16.68■□□□□ 0.26
CHMP1AQ9HD42 FAM47E-204ENST00000510328 1002 ntAPPRIS ALT2 TSL 2 BASIC16.68■□□□□ 0.26
CHMP1AQ9HD42 LINC01942-201ENST00000521373 513 ntTSL 4 BASIC16.68■□□□□ 0.26
CHMP1AQ9HD42 AC080023.1-201ENST00000526906 803 ntTSL 2 BASIC16.68■□□□□ 0.26
CHMP1AQ9HD42 AC092368.3-201ENST00000562549 1107 ntTSL 5 BASIC16.68■□□□□ 0.26
CHMP1AQ9HD42 COX4I1-216ENST00000568794 794 ntTSL 5 BASIC16.68■□□□□ 0.26
CHMP1AQ9HD42 MFSD11-216ENST00000590393 1141 ntBASIC16.68■□□□□ 0.26
CHMP1AQ9HD42 MBD3L1-202ENST00000595891 872 ntAPPRIS P1 TSL 2 BASIC16.68■□□□□ 0.26
CHMP1AQ9HD42 JOSD2-205ENST00000601423 802 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
CHMP1AQ9HD42 CD99-212ENST00000624481 1089 ntAPPRIS ALT2 TSL 2 BASIC16.68■□□□□ 0.26
CHMP1AQ9HD42 KLHL35-201ENST00000376292 1500 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
CHMP1AQ9HD42 MEN1-206ENST00000377321 2614 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
CHMP1AQ9HD42 CDC42EP2-201ENST00000279249 2023 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
CHMP1AQ9HD42 SORBS3-221ENST00000523965 2028 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
CHMP1AQ9HD42 ELF3-201ENST00000359651 4994 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
CHMP1AQ9HD42 PTCH1-201ENST00000331920 8057 ntAPPRIS P1 TSL 5 BASIC16.68■□□□□ 0.26
CHMP1AQ9HD42 ANKRD2-202ENST00000307518 1449 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
CHMP1AQ9HD42 TAL1-201ENST00000294339 5001 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
CHMP1AQ9HD42 ANKRD17-201ENST00000330838 7734 ntAPPRIS ALT2 TSL 2 BASIC16.68■□□□□ 0.26
CHMP1AQ9HD42 AC009237.14-201ENST00000609975 1594 ntBASIC16.68■□□□□ 0.26
CHMP1AQ9HD42 STEAP1-201ENST00000297205 1313 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
CHMP1AQ9HD42 BST1-202ENST00000382346 1993 ntAPPRIS ALT2 TSL 5 BASIC16.68■□□□□ 0.26
CHMP1AQ9HD42 RPS6KA1-203ENST00000374166 3131 ntTSL 5 BASIC16.68■□□□□ 0.26
CHMP1AQ9HD42 RUNX2-201ENST00000359524 5390 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
CHMP1AQ9HD42 ZNF582-207ENST00000619584 2297 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
CHMP1AQ9HD42 LINC01168-201ENST00000461291 5254 ntTSL 2 BASIC16.67■□□□□ 0.26
CHMP1AQ9HD42 CMTM7-201ENST00000334983 2038 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
CHMP1AQ9HD42 TSTA3-201ENST00000425753 1362 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
CHMP1AQ9HD42 MFSD10-211ENST00000514800 1776 ntTSL 5 BASIC16.67■□□□□ 0.26
CHMP1AQ9HD42 RAB5C-202ENST00000393860 1912 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
CHMP1AQ9HD42 SLC35E4-201ENST00000343605 2714 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
CHMP1AQ9HD42 SYBU-201ENST00000276646 2870 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
CHMP1AQ9HD42 FAM208B-201ENST00000328090 8626 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
CHMP1AQ9HD42 UMOD-201ENST00000302509 2477 ntAPPRIS P3 TSL 5 BASIC16.67■□□□□ 0.26
CHMP1AQ9HD42 PIGQ-206ENST00000422307 2052 ntTSL 3 BASIC16.67■□□□□ 0.26
CHMP1AQ9HD42 SPI1-201ENST00000227163 1168 ntAPPRIS ALT1 TSL 2 BASIC16.67■□□□□ 0.26
CHMP1AQ9HD42 TNFRSF18-201ENST00000328596 851 ntAPPRIS P4 TSL 1 (best) BASIC16.67■□□□□ 0.26
CHMP1AQ9HD42 C19orf24-201ENST00000409293 983 ntAPPRIS P1 TSL 2 BASIC16.67■□□□□ 0.26
CHMP1AQ9HD42 RARRES2P4-201ENST00000514074 484 ntBASIC16.67■□□□□ 0.26
CHMP1AQ9HD42 Z92544.1-201ENST00000567091 730 ntTSL 3 BASIC16.67■□□□□ 0.26
CHMP1AQ9HD42 ACBD4-216ENST00000619916 1276 ntTSL 5 BASIC16.67■□□□□ 0.26
CHMP1AQ9HD42 SLC35A2-212ENST00000634665 486 ntTSL 4 BASIC16.67■□□□□ 0.26
CHMP1AQ9HD42 AC008694.1-202ENST00000636953 945 ntBASIC16.67■□□□□ 0.26
CHMP1AQ9HD42 HAPLN4-201ENST00000291481 3449 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 22 ms