Protein–RNA interactions for Protein: Q96RI1

NR1H4, Bile acid receptor, humanhuman

Predicted RBP Predictions only

Length 486 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NR1H4Q96RI1 ST8SIA1-204ENST00000404299 1920 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
NR1H4Q96RI1 HOXA9-201ENST00000343483 2060 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
NR1H4Q96RI1 TRAPPC5-202ENST00000426877 765 ntAPPRIS P1 TSL 2 BASIC18.28■□□□□ 0.52
NR1H4Q96RI1 AL512631.2-201ENST00000604634 923 ntBASIC18.28■□□□□ 0.52
NR1H4Q96RI1 CARNS1-202ENST00000445895 3971 ntAPPRIS P1 TSL 5 BASIC18.28■□□□□ 0.52
NR1H4Q96RI1 DNAJB2-201ENST00000336576 3176 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
NR1H4Q96RI1 SLC25A47-201ENST00000361529 1738 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
NR1H4Q96RI1 AZIN2-204ENST00000373443 2048 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
NR1H4Q96RI1 AF117829.1-201ENST00000519655 1398 ntTSL 5 BASIC18.28■□□□□ 0.52
NR1H4Q96RI1 ADRM1-204ENST00000491935 1530 ntAPPRIS P1 TSL 5 BASIC18.28■□□□□ 0.52
NR1H4Q96RI1 MELTF-202ENST00000296351 1650 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
NR1H4Q96RI1 C8orf58-207ENST00000615223 1848 ntAPPRIS ALT2 TSL 5 BASIC18.28■□□□□ 0.52
NR1H4Q96RI1 TBC1D4-202ENST00000377636 6364 ntAPPRIS P3 TSL 2 BASIC18.28■□□□□ 0.52
NR1H4Q96RI1 C15orf56-202ENST00000623360 2129 ntTSL 2 BASIC18.28■□□□□ 0.52
NR1H4Q96RI1 IVNS1ABP-202ENST00000367498 4199 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
NR1H4Q96RI1 ENTPD8-202ENST00000371506 2222 ntAPPRIS P1 TSL 5 BASIC18.27■□□□□ 0.52
NR1H4Q96RI1 RBPJL-203ENST00000372743 1623 ntAPPRIS ALT1 TSL 1 (best) BASIC18.27■□□□□ 0.52
NR1H4Q96RI1 WISP2-203ENST00000372868 1600 ntAPPRIS P1 TSL 3 BASIC18.27■□□□□ 0.52
NR1H4Q96RI1 BMP2K-208ENST00000628286 3848 ntAPPRIS ALT2 TSL 5 BASIC18.27■□□□□ 0.52
NR1H4Q96RI1 CHRAC1-201ENST00000220913 2488 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
NR1H4Q96RI1 NR2C2-206ENST00000425241 2494 ntAPPRIS P1 TSL 2 BASIC18.27■□□□□ 0.52
NR1H4Q96RI1 TRMT6-201ENST00000203001 2327 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
NR1H4Q96RI1 WDFY4-202ENST00000360890 2193 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
NR1H4Q96RI1 RNH1-203ENST00000397604 1722 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
NR1H4Q96RI1 KDM5C-204ENST00000375401 6031 ntAPPRIS P3 TSL 1 (best) BASIC18.27■□□□□ 0.52
NR1H4Q96RI1 HMGXB3-206ENST00000613459 5567 ntAPPRIS ALT2 TSL 5 BASIC18.27■□□□□ 0.52
NR1H4Q96RI1 TAF4B-201ENST00000269142 5260 ntAPPRIS P3 TSL 1 (best) BASIC18.27■□□□□ 0.52
NR1H4Q96RI1 PCMTD2-202ENST00000299468 1049 ntTSL 5 BASIC18.27■□□□□ 0.52
NR1H4Q96RI1 TNFRSF25-201ENST00000348333 1119 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
NR1H4Q96RI1 TNFRSF25-202ENST00000351748 705 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
NR1H4Q96RI1 SURF2-201ENST00000371964 842 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
NR1H4Q96RI1 MOSPD3-204ENST00000424091 1115 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
NR1H4Q96RI1 RPP21-222ENST00000433076 577 ntTSL 2 BASIC18.27■□□□□ 0.52
NR1H4Q96RI1 WDR86-AS1-204ENST00000489632 751 ntTSL 3 BASIC18.27■□□□□ 0.52
NR1H4Q96RI1 SMARCA5-AS1-201ENST00000500800 945 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
NR1H4Q96RI1 HOXA11-AS1_1.1-201ENST00000613939 98 ntBASIC18.27■□□□□ 0.52
NR1H4Q96RI1 KIAA1456-201ENST00000400069 1982 ntTSL 2 BASIC18.27■□□□□ 0.52
NR1H4Q96RI1 GTF2IRD2B-210ENST00000629105 1910 ntTSL 5 BASIC18.27■□□□□ 0.51
NR1H4Q96RI1 C2CD2L-201ENST00000336702 4771 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
NR1H4Q96RI1 RBFOX1-215ENST00000553186 2196 ntTSL 1 (best) BASIC18.27■□□□□ 0.51
NR1H4Q96RI1 AC005498.3-201ENST00000596587 2045 ntTSL 1 (best) BASIC18.27■□□□□ 0.51
NR1H4Q96RI1 CALHM2-201ENST00000260743 1859 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
NR1H4Q96RI1 ST6GALNAC6-201ENST00000291839 2280 ntAPPRIS P3 TSL 1 (best) BASIC18.26■□□□□ 0.51
NR1H4Q96RI1 C9orf66-201ENST00000382387 2918 ntAPPRIS P1 BASIC18.26■□□□□ 0.51
NR1H4Q96RI1 GAL3ST4-201ENST00000360039 2537 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
NR1H4Q96RI1 RTCA-203ENST00000370128 2535 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
NR1H4Q96RI1 SYF2-201ENST00000236273 1345 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
NR1H4Q96RI1 NLE1-203ENST00000586869 5286 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
NR1H4Q96RI1 PVRIG-201ENST00000317271 1583 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
NR1H4Q96RI1 RABGAP1L-204ENST00000357444 2605 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
NR1H4Q96RI1 ZNF346-209ENST00000512315 1575 ntTSL 2 BASIC18.26■□□□□ 0.51
NR1H4Q96RI1 STIM2-212ENST00000639640 2241 ntAPPRIS P3 TSL 1 (best) BASIC18.26■□□□□ 0.51
NR1H4Q96RI1 PCDHA5-202ENST00000529859 5218 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
NR1H4Q96RI1 DBNL-210ENST00000448521 1808 ntAPPRIS ALT1 TSL 1 (best) BASIC18.26■□□□□ 0.51
NR1H4Q96RI1 PDE2A-226ENST00000544570 3119 ntTSL 5 BASIC18.26■□□□□ 0.51
NR1H4Q96RI1 CD276-201ENST00000318424 2738 ntTSL 5 BASIC18.26■□□□□ 0.51
NR1H4Q96RI1 AC008764.6-201ENST00000595909 2069 ntBASIC18.26■□□□□ 0.51
NR1H4Q96RI1 SLC6A9-202ENST00000360584 2330 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
NR1H4Q96RI1 BAG4-202ENST00000432471 1943 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
NR1H4Q96RI1 MIPEP-201ENST00000382172 2400 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
NR1H4Q96RI1 EMC9-201ENST00000216799 835 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
NR1H4Q96RI1 PEMT-201ENST00000255389 1013 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
NR1H4Q96RI1 RAB32-201ENST00000367495 1217 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
NR1H4Q96RI1 HDHD5-203ENST00000399852 1118 ntTSL 3 BASIC18.26■□□□□ 0.51
NR1H4Q96RI1 PTCHD3P2-201ENST00000424937 1205 ntBASIC18.26■□□□□ 0.51
NR1H4Q96RI1 AL390816.2-201ENST00000554252 737 ntTSL 3 BASIC18.26■□□□□ 0.51
NR1H4Q96RI1 AC010525.1-201ENST00000585559 441 ntBASIC18.26■□□□□ 0.51
NR1H4Q96RI1 FAM228B-208ENST00000613899 1238 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
NR1H4Q96RI1 PCDH7-201ENST00000361762 6403 ntAPPRIS P3 TSL 1 (best) BASIC18.26■□□□□ 0.51
NR1H4Q96RI1 CD40-201ENST00000372276 1623 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
NR1H4Q96RI1 VDAC1-203ENST00000395047 1873 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
NR1H4Q96RI1 SEMA3D-202ENST00000444867 1605 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
NR1H4Q96RI1 ESPN-205ENST00000461727 1869 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
NR1H4Q96RI1 C10orf95-201ENST00000625129 1469 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
NR1H4Q96RI1 TAL1-201ENST00000294339 5001 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
NR1H4Q96RI1 MMP17-206ENST00000535291 2301 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
NR1H4Q96RI1 FKBP10-201ENST00000321562 2662 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
NR1H4Q96RI1 LMNB1-202ENST00000395354 1572 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
NR1H4Q96RI1 PHOSPHO1-206ENST00000514112 1587 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
NR1H4Q96RI1 SYT6-210ENST00000641643 1587 ntBASIC18.25■□□□□ 0.51
NR1H4Q96RI1 TADA1-201ENST00000367874 2159 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
NR1H4Q96RI1 PHKA1-201ENST00000339490 6121 ntAPPRIS ALT1 TSL 1 (best) BASIC18.25■□□□□ 0.51
NR1H4Q96RI1 P3H4-202ENST00000393928 2601 ntAPPRIS P2 TSL 1 (best) BASIC18.25■□□□□ 0.51
NR1H4Q96RI1 UBQLN4-201ENST00000368309 3576 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
NR1H4Q96RI1 WIPF1-202ENST00000359761 2003 ntAPPRIS P2 TSL 1 (best) BASIC18.25■□□□□ 0.51
NR1H4Q96RI1 SERPINA4-201ENST00000298841 1784 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
NR1H4Q96RI1 BAIAP2L2-202ENST00000381669 2146 ntAPPRIS P2 TSL 1 (best) BASIC18.25■□□□□ 0.51
NR1H4Q96RI1 CORO1B-201ENST00000341356 1881 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
NR1H4Q96RI1 TMEM198B-203ENST00000482378 2230 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
NR1H4Q96RI1 SIRT1-201ENST00000212015 4094 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
NR1H4Q96RI1 DSCC1-201ENST00000313655 2314 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
NR1H4Q96RI1 SSR2-210ENST00000480567 895 ntAPPRIS P1 TSL 2 BASIC18.25■□□□□ 0.51
NR1H4Q96RI1 TMC6-218ENST00000591436 1155 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
NR1H4Q96RI1 MMP28-203ENST00000612672 1092 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
NR1H4Q96RI1 SHISA9-205ENST00000639941 1135 ntAPPRIS ALT2 TSL 5 BASIC18.25■□□□□ 0.51
NR1H4Q96RI1 KCTD20-202ENST00000373731 5619 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
NR1H4Q96RI1 PODXL2-201ENST00000342480 2186 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
NR1H4Q96RI1 TBXA2R-204ENST00000589966 1814 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
NR1H4Q96RI1 DTNB-209ENST00000407038 2294 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
NR1H4Q96RI1 PLA2G2F-201ENST00000375102 2723 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 55.8 ms