Protein–RNA interactions for Protein: Q8N2C3

DEPDC4, DEP domain-containing protein 4, humanhuman

Predictions only

Length 294 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4Q8N2C3 CSK-201ENST00000220003 2767 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
DEPDC4Q8N2C3 TESMIN-201ENST00000255087 2579 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
DEPDC4Q8N2C3 FLT1-201ENST00000282397 7092 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
DEPDC4Q8N2C3 MSL1-202ENST00000398532 4707 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
DEPDC4Q8N2C3 LAG3-201ENST00000203629 1974 ntAPPRIS P2 TSL 1 (best) BASIC18.03■□□□□ 0.48
DEPDC4Q8N2C3 COL18A1-202ENST00000355480 5924 ntAPPRIS P3 TSL 1 (best) BASIC18.03■□□□□ 0.48
DEPDC4Q8N2C3 GCC2-AS1-201ENST00000322353 558 ntTSL 2 BASIC18.03■□□□□ 0.48
DEPDC4Q8N2C3 AL512625.2-201ENST00000417533 625 ntBASIC18.03■□□□□ 0.48
DEPDC4Q8N2C3 ZCCHC9-204ENST00000438268 1248 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
DEPDC4Q8N2C3 MIR4758-201ENST00000577688 71 ntBASIC18.03■□□□□ 0.48
DEPDC4Q8N2C3 MAGIX-202ENST00000595224 1238 ntAPPRIS P2 TSL 5 BASIC18.03■□□□□ 0.48
DEPDC4Q8N2C3 AP2S1-207ENST00000599990 829 ntAPPRIS ALT1 TSL 2 BASIC18.03■□□□□ 0.48
DEPDC4Q8N2C3 ETHE1-205ENST00000600651 1052 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
DEPDC4Q8N2C3 FGF8-207ENST00000618991 856 ntTSL 3 BASIC18.03■□□□□ 0.48
DEPDC4Q8N2C3 YBX3-201ENST00000228251 1796 ntAPPRIS P3 TSL 1 (best) BASIC18.03■□□□□ 0.48
DEPDC4Q8N2C3 PDE9A-212ENST00000398234 1783 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
DEPDC4Q8N2C3 TBC1D19-201ENST00000264866 2263 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
DEPDC4Q8N2C3 TTLL3-209ENST00000426895 2767 ntAPPRIS P2 TSL 2 BASIC18.03■□□□□ 0.48
DEPDC4Q8N2C3 CXorf40A-204ENST00000423421 1403 ntAPPRIS P3 TSL 1 (best) BASIC18.03■□□□□ 0.48
DEPDC4Q8N2C3 AP001271.2-201ENST00000624018 1556 ntBASIC18.03■□□□□ 0.48
DEPDC4Q8N2C3 AKR7A3-201ENST00000361640 1710 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
DEPDC4Q8N2C3 RNH1-203ENST00000397604 1722 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
DEPDC4Q8N2C3 OPRD1-201ENST00000234961 9345 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
DEPDC4Q8N2C3 NDRG2-215ENST00000553503 2162 ntAPPRIS ALT1 TSL 1 (best) BASIC18.03■□□□□ 0.48
DEPDC4Q8N2C3 ESPN-216ENST00000636330 4731 ntAPPRIS ALT2 TSL 5 BASIC18.03■□□□□ 0.48
DEPDC4Q8N2C3 GRB10-205ENST00000401949 2627 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
DEPDC4Q8N2C3 LINC01356-201ENST00000401018 1819 ntTSL 2 BASIC18.02■□□□□ 0.48
DEPDC4Q8N2C3 ACD-202ENST00000393919 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC18.02■□□□□ 0.48
DEPDC4Q8N2C3 LTB4R2-202ENST00000528054 3092 ntBASIC18.02■□□□□ 0.48
DEPDC4Q8N2C3 CCKBR-203ENST00000525462 2138 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
DEPDC4Q8N2C3 TM9SF1-206ENST00000528669 2425 ntTSL 5 BASIC18.02■□□□□ 0.48
DEPDC4Q8N2C3 KLHDC9-201ENST00000368011 1314 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
DEPDC4Q8N2C3 ESX1-201ENST00000372588 1495 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
DEPDC4Q8N2C3 AC008687.4-201ENST00000637680 1485 ntAPPRIS P1 TSL 5 BASIC18.02■□□□□ 0.48
DEPDC4Q8N2C3 EPB41L3-207ENST00000545076 3190 ntAPPRIS ALT2 TSL 2 BASIC18.02■□□□□ 0.48
DEPDC4Q8N2C3 EPS8L2-230ENST00000610855 1633 ntTSL 5 BASIC18.02■□□□□ 0.48
DEPDC4Q8N2C3 CGRRF1-201ENST00000216420 2057 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
DEPDC4Q8N2C3 PDCD10-201ENST00000392750 2067 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
DEPDC4Q8N2C3 MAN2A1-201ENST00000261483 4667 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
DEPDC4Q8N2C3 TNPO2-201ENST00000356861 4962 ntAPPRIS ALT1 TSL 1 (best) BASIC18.02■□□□□ 0.48
DEPDC4Q8N2C3 RAPH1-211ENST00000457812 2673 ntAPPRIS ALT2 TSL 2 BASIC18.02■□□□□ 0.48
DEPDC4Q8N2C3 DCHS2-201ENST00000339452 5064 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
DEPDC4Q8N2C3 UBN1-201ENST00000262376 6252 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
DEPDC4Q8N2C3 NTSR2-201ENST00000306928 1569 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
DEPDC4Q8N2C3 LRRC42-203ENST00000371370 2037 ntAPPRIS P1 TSL 2 BASIC18.02■□□□□ 0.48
DEPDC4Q8N2C3 CD44-222ENST00000526025 1052 ntTSL 2 BASIC18.02■□□□□ 0.48
DEPDC4Q8N2C3 AC074212.1-201ENST00000559756 1402 ntTSL 3 BASIC18.02■□□□□ 0.48
DEPDC4Q8N2C3 CD24-202ENST00000610952 802 ntAPPRIS P3 TSL 2 BASIC18.02■□□□□ 0.48
DEPDC4Q8N2C3 AC133041.1-202ENST00000642053 222 ntBASIC18.02■□□□□ 0.48
DEPDC4Q8N2C3 FRRS1L-201ENST00000561981 8197 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
DEPDC4Q8N2C3 SLC12A4-201ENST00000316341 4765 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
DEPDC4Q8N2C3 FAM72C-202ENST00000584486 2297 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
DEPDC4Q8N2C3 ATP2A2-201ENST00000308664 4453 ntAPPRIS ALT1 TSL 1 (best) BASIC18.02■□□□□ 0.47
DEPDC4Q8N2C3 MIB2-231ENST00000518681 3116 ntTSL 1 (best) BASIC18.02■□□□□ 0.47
DEPDC4Q8N2C3 EVX1-202ENST00000496902 2955 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
DEPDC4Q8N2C3 CITED2-201ENST00000367651 2354 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
DEPDC4Q8N2C3 GTF2IP4-202ENST00000544802 3609 ntTSL 1 (best) BASIC18.02■□□□□ 0.47
DEPDC4Q8N2C3 PAQR6-205ENST00000368270 1765 ntTSL 1 (best) BASIC18.02■□□□□ 0.47
DEPDC4Q8N2C3 FOXP4-202ENST00000373057 3300 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
DEPDC4Q8N2C3 ARHGEF28-203ENST00000426542 6118 ntAPPRIS ALT2 TSL 1 (best) BASIC18.01■□□□□ 0.47
DEPDC4Q8N2C3 LAMP1-201ENST00000332556 2699 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
DEPDC4Q8N2C3 CARD9-201ENST00000371732 2123 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
DEPDC4Q8N2C3 ARHGAP22-210ENST00000477708 1951 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
DEPDC4Q8N2C3 KRT16P6-202ENST00000425692 1426 ntBASIC18.01■□□□□ 0.47
DEPDC4Q8N2C3 MED10-201ENST00000255764 1141 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
DEPDC4Q8N2C3 MAGI2-AS3-209ENST00000448195 774 ntTSL 3 BASIC18.01■□□□□ 0.47
DEPDC4Q8N2C3 IDH1-AS1-202ENST00000448588 489 ntTSL 3 BASIC18.01■□□□□ 0.47
DEPDC4Q8N2C3 AC142086.2-201ENST00000569753 217 ntBASIC18.01■□□□□ 0.47
DEPDC4Q8N2C3 NDUFV2-AS1-201ENST00000582375 770 ntTSL 2 BASIC18.01■□□□□ 0.47
DEPDC4Q8N2C3 AL356652.1-201ENST00000615962 565 ntBASIC18.01■□□□□ 0.47
DEPDC4Q8N2C3 AL772284.2-201ENST00000620151 1147 ntAPPRIS P1 TSL 5 BASIC18.01■□□□□ 0.47
DEPDC4Q8N2C3 AC244517.4-202ENST00000624089 484 ntTSL 3 BASIC18.01■□□□□ 0.47
DEPDC4Q8N2C3 SLC25A41-201ENST00000321510 1532 ntAPPRIS P1 TSL 5 BASIC18.01■□□□□ 0.47
DEPDC4Q8N2C3 C2CD2L-201ENST00000336702 4771 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
DEPDC4Q8N2C3 RHOU-201ENST00000366691 4372 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
DEPDC4Q8N2C3 UAP1-204ENST00000367926 2294 ntAPPRIS P3 TSL 1 (best) BASIC18.01■□□□□ 0.47
DEPDC4Q8N2C3 LRPPRC-202ENST00000409659 1610 ntTSL 5 BASIC18.01■□□□□ 0.47
DEPDC4Q8N2C3 AMZ1-202ENST00000407112 1862 ntTSL 2 BASIC18.01■□□□□ 0.47
DEPDC4Q8N2C3 ZBTB7B-201ENST00000292176 2129 ntAPPRIS P3 TSL 1 (best) BASIC18.01■□□□□ 0.47
DEPDC4Q8N2C3 AHCYL2-201ENST00000325006 5056 ntAPPRIS P3 TSL 1 (best) BASIC18.01■□□□□ 0.47
DEPDC4Q8N2C3 TSEN15-203ENST00000423085 1743 ntTSL 2 BASIC18.01■□□□□ 0.47
DEPDC4Q8N2C3 MARK2-209ENST00000509502 2862 ntAPPRIS ALT2 TSL 2 BASIC18.01■□□□□ 0.47
DEPDC4Q8N2C3 RNF167-205ENST00000571816 1728 ntAPPRIS P3 TSL 5 BASIC18.01■□□□□ 0.47
DEPDC4Q8N2C3 GABBR1-204ENST00000377016 4299 ntTSL 5 BASIC18.01■□□□□ 0.47
DEPDC4Q8N2C3 CDK11B-207ENST00000626918 2457 ntTSL 5 BASIC18■□□□□ 0.47
DEPDC4Q8N2C3 CDK11B-208ENST00000629289 2490 ntTSL 5 BASIC18■□□□□ 0.47
DEPDC4Q8N2C3 CDK11B-209ENST00000629312 2496 ntTSL 5 BASIC18■□□□□ 0.47
DEPDC4Q8N2C3 KBTBD2-201ENST00000304056 3745 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
DEPDC4Q8N2C3 SCARB1-211ENST00000546215 1597 ntTSL 1 (best) BASIC18■□□□□ 0.47
DEPDC4Q8N2C3 DHRSX-201ENST00000334651 2571 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
DEPDC4Q8N2C3 SLC34A3-202ENST00000538474 2162 ntAPPRIS P1 TSL 5 BASIC18■□□□□ 0.47
DEPDC4Q8N2C3 MSLN-202ENST00000545450 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC18■□□□□ 0.47
DEPDC4Q8N2C3 SLC7A10-201ENST00000253188 1946 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
DEPDC4Q8N2C3 FAM83E-201ENST00000263266 1926 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
DEPDC4Q8N2C3 GTF2IRD2B-210ENST00000629105 1910 ntTSL 5 BASIC18■□□□□ 0.47
DEPDC4Q8N2C3 FGFR3-205ENST00000440486 4287 ntAPPRIS P3 TSL 5 BASIC18■□□□□ 0.47
DEPDC4Q8N2C3 ISLR2-210ENST00000565540 2780 ntAPPRIS P1 TSL 4 BASIC18■□□□□ 0.47
DEPDC4Q8N2C3 SREBF2-201ENST00000361204 5240 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
DEPDC4Q8N2C3 MMP28-204ENST00000615136 2033 ntAPPRIS ALT2 TSL 1 (best) BASIC18■□□□□ 0.47
DEPDC4Q8N2C3 LHX8-202ENST00000356261 1764 ntAPPRIS ALT2 TSL 1 (best) BASIC18■□□□□ 0.47
Retrieved 100 of 98,524 protein–RNA pairs in 25.8 ms