Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 TRAF3IP2-AS1-208ENST00000525151 609 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
COL28A1Q2UY09 RAB2A-211ENST00000531289 1058 ntTSL 2 BASIC18.67■□□□□ 0.58
COL28A1Q2UY09 AP005242.2-201ENST00000580065 1175 ntBASIC18.67■□□□□ 0.58
COL28A1Q2UY09 ZNF534-205ENST00000617900 1085 ntTSL 2 BASIC18.67■□□□□ 0.58
COL28A1Q2UY09 DCAKD-208ENST00000614054 2054 ntAPPRIS P1 TSL 2 BASIC18.67■□□□□ 0.58
COL28A1Q2UY09 DMRTB1-201ENST00000371445 1910 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
COL28A1Q2UY09 KRT18-202ENST00000388837 1420 ntAPPRIS P1 TSL 5 BASIC18.66■□□□□ 0.58
COL28A1Q2UY09 AP006284.1-201ENST00000527620 2210 ntTSL 2 BASIC18.66■□□□□ 0.58
COL28A1Q2UY09 ECE2-203ENST00000359140 3147 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
COL28A1Q2UY09 SLC35E4-202ENST00000406566 2081 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
COL28A1Q2UY09 PXMP4-201ENST00000217398 979 ntTSL 2 BASIC18.66■□□□□ 0.58
COL28A1Q2UY09 MADCAM1-203ENST00000382683 603 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
COL28A1Q2UY09 ELAC2-212ENST00000578071 579 ntTSL 4 BASIC18.66■□□□□ 0.58
COL28A1Q2UY09 MED9-202ENST00000580462 565 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
COL28A1Q2UY09 AC023511.2-201ENST00000618803 211 ntBASIC18.66■□□□□ 0.58
COL28A1Q2UY09 ENTPD6-203ENST00000376652 2750 ntAPPRIS P3 TSL 1 (best) BASIC18.66■□□□□ 0.58
COL28A1Q2UY09 MGARP-201ENST00000398955 1339 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
COL28A1Q2UY09 KLF16-201ENST00000250916 2890 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
COL28A1Q2UY09 DET1-201ENST00000268148 2267 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
COL28A1Q2UY09 CD55-203ENST00000367063 1691 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
COL28A1Q2UY09 YDJC-201ENST00000292778 1351 ntAPPRIS P1 TSL 2 BASIC18.66■□□□□ 0.58
COL28A1Q2UY09 FXYD3-203ENST00000435734 1467 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
COL28A1Q2UY09 PGPEP1L-202ENST00000535714 1483 ntTSL 2 BASIC18.65■□□□□ 0.58
COL28A1Q2UY09 AC007225.1-201ENST00000566331 1836 ntBASIC18.65■□□□□ 0.58
COL28A1Q2UY09 GALNT13-201ENST00000392825 5536 ntAPPRIS P1 TSL 2 BASIC18.65■□□□□ 0.58
COL28A1Q2UY09 TSSC4-203ENST00000380996 1544 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
COL28A1Q2UY09 SAAL1-204ENST00000529318 1503 ntAPPRIS ALT1 TSL 5 BASIC18.65■□□□□ 0.58
COL28A1Q2UY09 LSM4-203ENST00000593829 1908 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
COL28A1Q2UY09 TRABD-204ENST00000395829 1628 ntAPPRIS ALT2 TSL 5 BASIC18.65■□□□□ 0.58
COL28A1Q2UY09 GPR162-203ENST00000428545 1610 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
COL28A1Q2UY09 EYA2-202ENST00000327619 2702 ntAPPRIS P1 TSL 2 BASIC18.65■□□□□ 0.58
COL28A1Q2UY09 KRT18P16-201ENST00000510337 1294 ntBASIC18.65■□□□□ 0.58
COL28A1Q2UY09 AC098864.1-204ENST00000513752 805 ntTSL 4 BASIC18.65■□□□□ 0.58
COL28A1Q2UY09 TXNL4A-211ENST00000592837 611 ntTSL 2 BASIC18.65■□□□□ 0.58
COL28A1Q2UY09 AC011445.1-201ENST00000601911 877 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
COL28A1Q2UY09 TXNDC12-205ENST00000610127 806 ntTSL 2 BASIC18.65■□□□□ 0.58
COL28A1Q2UY09 AC004816.2-201ENST00000622856 284 ntTSL 5 BASIC18.65■□□□□ 0.58
COL28A1Q2UY09 FP475955.1-201ENST00000624937 553 ntTSL 4 BASIC18.65■□□□□ 0.58
COL28A1Q2UY09 KCNK17-202ENST00000453413 1706 ntAPPRIS ALT2 TSL 5 BASIC18.65■□□□□ 0.58
COL28A1Q2UY09 SRCIN1-213ENST00000617146 7058 ntAPPRIS P2 TSL 1 (best) BASIC18.65■□□□□ 0.58
COL28A1Q2UY09 FAM170B-201ENST00000311787 1401 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
COL28A1Q2UY09 ZGPAT-206ENST00000448100 1881 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
COL28A1Q2UY09 Z83844.2-201ENST00000456099 1945 ntTSL 2 BASIC18.64■□□□□ 0.58
COL28A1Q2UY09 GPRIN2-202ENST00000374317 1966 ntAPPRIS P1 TSL 3 BASIC18.64■□□□□ 0.58
COL28A1Q2UY09 DUSP7-202ENST00000495880 3340 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
COL28A1Q2UY09 GCSH-201ENST00000315467 1597 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
COL28A1Q2UY09 ATPAF2-206ENST00000474627 1564 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
COL28A1Q2UY09 NXN-201ENST00000336868 3036 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
COL28A1Q2UY09 ST3GAL4-203ENST00000392669 1724 ntAPPRIS ALT1 TSL 1 (best) BASIC18.64■□□□□ 0.57
COL28A1Q2UY09 ZIM2-206ENST00000599935 2226 ntAPPRIS P1 TSL 5 BASIC18.64■□□□□ 0.57
COL28A1Q2UY09 UBE2C-201ENST00000243893 476 ntTSL 2 BASIC18.64■□□□□ 0.57
COL28A1Q2UY09 GPR32-201ENST00000270590 1269 ntAPPRIS P1 BASIC18.64■□□□□ 0.57
COL28A1Q2UY09 DYNLT3-203ENST00000432389 719 ntTSL 5 BASIC18.64■□□□□ 0.57
COL28A1Q2UY09 C17orf49-208ENST00000552402 760 ntTSL 2 BASIC18.64■□□□□ 0.57
COL28A1Q2UY09 AC069148.1-201ENST00000608741 768 ntBASIC18.64■□□□□ 0.57
COL28A1Q2UY09 AL121832.1-201ENST00000615180 677 ntTSL 3 BASIC18.64■□□□□ 0.57
COL28A1Q2UY09 MIR2861-201ENST00000636310 90 ntBASIC18.64■□□□□ 0.57
COL28A1Q2UY09 ASAH1-251ENST00000637561 929 ntTSL 2 BASIC18.64■□□□□ 0.57
COL28A1Q2UY09 AL031985.4-201ENST00000642138 673 ntBASIC18.64■□□□□ 0.57
COL28A1Q2UY09 GFER-201ENST00000248114 2345 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
COL28A1Q2UY09 LINC00094-201ENST00000432807 2300 ntAPPRIS ALT2 TSL 2 BASIC18.64■□□□□ 0.57
COL28A1Q2UY09 HCK-203ENST00000375862 1806 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
COL28A1Q2UY09 CACNA1I-204ENST00000407673 5952 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
COL28A1Q2UY09 FSCN1P1-201ENST00000568912 1481 ntBASIC18.64■□□□□ 0.57
COL28A1Q2UY09 METTL1-202ENST00000324871 2066 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
COL28A1Q2UY09 NYAP1-202ENST00000454988 2777 ntTSL 5 BASIC18.64■□□□□ 0.57
COL28A1Q2UY09 SETD7-202ENST00000404104 1590 ntTSL 2 BASIC18.64■□□□□ 0.57
COL28A1Q2UY09 MFSD7-204ENST00000503156 1632 ntAPPRIS ALT2 TSL 5 BASIC18.63■□□□□ 0.57
COL28A1Q2UY09 ADGRA2-201ENST00000315215 6270 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
COL28A1Q2UY09 TMED4-203ENST00000457408 2322 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
COL28A1Q2UY09 ME2-216ENST00000639850 2331 ntTSL 5 BASIC18.63■□□□□ 0.57
COL28A1Q2UY09 PRMT8-202ENST00000382622 2366 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
COL28A1Q2UY09 VCPKMT-202ENST00000395860 1761 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
COL28A1Q2UY09 GATA5-201ENST00000252997 2595 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
COL28A1Q2UY09 AMZ1-202ENST00000407112 1862 ntTSL 2 BASIC18.63■□□□□ 0.57
COL28A1Q2UY09 CXXC5-201ENST00000302517 2658 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
COL28A1Q2UY09 ADAM9-203ENST00000466936 2053 ntTSL 2 BASIC18.63■□□□□ 0.57
COL28A1Q2UY09 MRPL43-205ENST00000370234 798 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
COL28A1Q2UY09 WDR4-202ENST00000398208 2122 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
COL28A1Q2UY09 HMGA1P5-201ENST00000412453 271 ntBASIC18.63■□□□□ 0.57
COL28A1Q2UY09 AC106771.1-201ENST00000502209 372 ntTSL 2 BASIC18.63■□□□□ 0.57
COL28A1Q2UY09 AP000777.3-201ENST00000538705 491 ntTSL 3 BASIC18.63■□□□□ 0.57
COL28A1Q2UY09 RPS15A-205ENST00000565420 802 ntAPPRIS P1 TSL 2 BASIC18.63■□□□□ 0.57
COL28A1Q2UY09 FFAR4-203ENST00000604414 1142 ntTSL 3 BASIC18.63■□□□□ 0.57
COL28A1Q2UY09 Metazoa_SRP.33-201ENST00000613468 285 ntBASIC18.63■□□□□ 0.57
COL28A1Q2UY09 TRIM74-201ENST00000285805 1350 ntAPPRIS P2 TSL 1 (best) BASIC18.63■□□□□ 0.57
COL28A1Q2UY09 TRIM73-201ENST00000323819 1358 ntAPPRIS P2 TSL 1 (best) BASIC18.63■□□□□ 0.57
COL28A1Q2UY09 LRRC23-207ENST00000433346 1387 ntTSL 5 BASIC18.63■□□□□ 0.57
COL28A1Q2UY09 LYSMD4-210ENST00000545021 2431 ntTSL 4 BASIC18.63■□□□□ 0.57
COL28A1Q2UY09 CERKL-201ENST00000339098 1677 ntAPPRIS P3 TSL 1 (best) BASIC18.63■□□□□ 0.57
COL28A1Q2UY09 DTX3-208ENST00000551632 1840 ntAPPRIS ALT1 TSL 2 BASIC18.63■□□□□ 0.57
COL28A1Q2UY09 CTU2-210ENST00000567949 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
COL28A1Q2UY09 ME3-212ENST00000543262 2311 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
COL28A1Q2UY09 ZNF668-207ENST00000535577 2396 ntAPPRIS P1 TSL 5 BASIC18.62■□□□□ 0.57
COL28A1Q2UY09 CDK13-207ENST00000613626 3099 ntTSL 5 BASIC18.62■□□□□ 0.57
COL28A1Q2UY09 UBTD2-201ENST00000393792 3301 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
COL28A1Q2UY09 BAD-201ENST00000309032 929 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
COL28A1Q2UY09 PIEZO1-202ENST00000327397 1246 ntTSL 2 BASIC18.62■□□□□ 0.57
COL28A1Q2UY09 SMYD3-204ENST00000403792 1209 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
COL28A1Q2UY09 LIME1-205ENST00000480139 819 ntAPPRIS ALT2 TSL 3 BASIC18.62■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 18.6 ms