Protein–RNA interactions for Protein: Q5VTB9

RNF220, E3 ubiquitin-protein ligase RNF220, humanhuman

Predictions only

Length 566 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF220Q5VTB9 RBCK1-203ENST00000382181 2208 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
RNF220Q5VTB9 PCBP3-203ENST00000400308 1911 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
RNF220Q5VTB9 MTHFD1L-211ENST00000611279 3475 ntAPPRIS ALT1 TSL 5 BASIC18.7■□□□□ 0.58
RNF220Q5VTB9 PYGL-201ENST00000216392 3048 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
RNF220Q5VTB9 CREB3L3-202ENST00000595923 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
RNF220Q5VTB9 KANSL2-212ENST00000550347 2714 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
RNF220Q5VTB9 COPS7A-215ENST00000543155 2127 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
RNF220Q5VTB9 ACTN3-203ENST00000513398 2939 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
RNF220Q5VTB9 GLB1-201ENST00000307363 2616 ntAPPRIS P4 TSL 1 (best) BASIC18.7■□□□□ 0.58
RNF220Q5VTB9 MAP4K4-204ENST00000350198 7316 ntTSL 5 BASIC18.69■□□□□ 0.58
RNF220Q5VTB9 FIP1L1-202ENST00000337488 2198 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
RNF220Q5VTB9 SLCO4A1-202ENST00000370507 2665 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
RNF220Q5VTB9 DVL2-201ENST00000005340 3018 ntAPPRIS P2 TSL 1 (best) BASIC18.69■□□□□ 0.58
RNF220Q5VTB9 MAEA-201ENST00000264750 2058 ntTSL 2 BASIC18.69■□□□□ 0.58
RNF220Q5VTB9 CROCCP3-202ENST00000420820 1947 ntBASIC18.69■□□□□ 0.58
RNF220Q5VTB9 PANX1-201ENST00000227638 2769 ntAPPRIS P2 TSL 1 (best) BASIC18.69■□□□□ 0.58
RNF220Q5VTB9 IL15RA-201ENST00000379971 588 ntTSL 3 BASIC18.69■□□□□ 0.58
RNF220Q5VTB9 VMO1-204ENST00000441199 741 ntTSL 2 BASIC18.69■□□□□ 0.58
RNF220Q5VTB9 NMRAL1-212ENST00000574425 1240 ntAPPRIS P1 TSL 2 BASIC18.69■□□□□ 0.58
RNF220Q5VTB9 AC005697.1-201ENST00000582441 582 ntAPPRIS P1 TSL 4 BASIC18.69■□□□□ 0.58
RNF220Q5VTB9 ETHE1-205ENST00000600651 1052 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
RNF220Q5VTB9 ZNF517-201ENST00000359971 2335 ntAPPRIS P1 TSL 4 BASIC18.69■□□□□ 0.58
RNF220Q5VTB9 LRRC32-202ENST00000404995 2656 ntAPPRIS P1 TSL 5 BASIC18.69■□□□□ 0.58
RNF220Q5VTB9 P2RX2-201ENST00000343948 1494 ntAPPRIS P4 TSL 1 (best) BASIC18.69■□□□□ 0.58
RNF220Q5VTB9 HOXB1-201ENST00000239174 2020 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
RNF220Q5VTB9 PRR5-ARHGAP8-201ENST00000352766 2043 ntAPPRIS P1 TSL 2 BASIC18.69■□□□□ 0.58
RNF220Q5VTB9 FNBP1-203ENST00000443566 5227 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
RNF220Q5VTB9 AC118553.2-203ENST00000639037 2590 ntAPPRIS P5 TSL 5 BASIC18.69■□□□□ 0.58
RNF220Q5VTB9 SH2D3C-203ENST00000373277 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
RNF220Q5VTB9 SLC25A39-212ENST00000590194 1542 ntAPPRIS P3 TSL 5 BASIC18.69■□□□□ 0.58
RNF220Q5VTB9 GTF2H4-201ENST00000259895 1735 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
RNF220Q5VTB9 LEFTY2-201ENST00000366820 2287 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
RNF220Q5VTB9 KSR1-201ENST00000268763 2806 ntAPPRIS ALT2 TSL 5 BASIC18.69■□□□□ 0.58
RNF220Q5VTB9 FOXD2-201ENST00000334793 4675 ntAPPRIS P1 BASIC18.68■□□□□ 0.58
RNF220Q5VTB9 IKBIP-203ENST00000393042 1368 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
RNF220Q5VTB9 LINC01465-201ENST00000408887 1940 ntBASIC18.68■□□□□ 0.58
RNF220Q5VTB9 FKBP10-201ENST00000321562 2662 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
RNF220Q5VTB9 MYO15B-232ENST00000610510 9195 ntAPPRIS P1 TSL 5 BASIC18.68■□□□□ 0.58
RNF220Q5VTB9 SLC2A5-201ENST00000377414 2344 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
RNF220Q5VTB9 SF1-203ENST00000377387 2947 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
RNF220Q5VTB9 CXorf40A-204ENST00000423421 1403 ntAPPRIS P3 TSL 1 (best) BASIC18.68■□□□□ 0.58
RNF220Q5VTB9 AC087633.2-202ENST00000565166 1439 ntBASIC18.68■□□□□ 0.58
RNF220Q5VTB9 LINC00482-201ENST00000332012 2023 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
RNF220Q5VTB9 CCT7-215ENST00000539919 2031 ntTSL 2 BASIC18.68■□□□□ 0.58
RNF220Q5VTB9 PLD4-204ENST00000540372 2007 ntAPPRIS ALT2 TSL 2 BASIC18.68■□□□□ 0.58
RNF220Q5VTB9 ABHD13-201ENST00000375898 5338 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
RNF220Q5VTB9 TM4SF5-201ENST00000270560 708 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
RNF220Q5VTB9 PYCR3-203ENST00000433751 1000 ntAPPRIS ALT2 TSL 2 BASIC18.68■□□□□ 0.58
RNF220Q5VTB9 PBX1-209ENST00000485769 834 ntTSL 2 BASIC18.68■□□□□ 0.58
RNF220Q5VTB9 EDA-209ENST00000525810 843 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
RNF220Q5VTB9 EDA-210ENST00000527388 927 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
RNF220Q5VTB9 RPLP2-207ENST00000530797 637 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
RNF220Q5VTB9 COX4I1-216ENST00000568794 794 ntTSL 5 BASIC18.68■□□□□ 0.58
RNF220Q5VTB9 MFSD11-216ENST00000590393 1141 ntBASIC18.68■□□□□ 0.58
RNF220Q5VTB9 AC008687.4-201ENST00000637680 1485 ntAPPRIS P1 TSL 5 BASIC18.68■□□□□ 0.58
RNF220Q5VTB9 VRK2-207ENST00000440705 1676 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
RNF220Q5VTB9 IRF7-203ENST00000397566 2051 ntAPPRIS P4 TSL 1 (best) BASIC18.68■□□□□ 0.58
RNF220Q5VTB9 TNRC18P3-201ENST00000441896 2691 ntBASIC18.68■□□□□ 0.58
RNF220Q5VTB9 MYH7B-201ENST00000262873 6293 ntAPPRIS P2 TSL 1 (best) BASIC18.68■□□□□ 0.58
RNF220Q5VTB9 PTP4A3-202ENST00000349124 2710 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
RNF220Q5VTB9 ADPGK-AS1-201ENST00000563592 2730 ntTSL 2 BASIC18.68■□□□□ 0.58
RNF220Q5VTB9 FXYD6-211ENST00000539526 2132 ntAPPRIS P2 TSL 1 (best) BASIC18.68■□□□□ 0.58
RNF220Q5VTB9 RRN3-205ENST00000563559 2128 ntTSL 5 BASIC18.68■□□□□ 0.58
RNF220Q5VTB9 CARNS1-202ENST00000445895 3971 ntAPPRIS P1 TSL 5 BASIC18.68■□□□□ 0.58
RNF220Q5VTB9 ILDR2-203ENST00000469934 1950 ntAPPRIS ALT2 TSL 5 BASIC18.68■□□□□ 0.58
RNF220Q5VTB9 RAB34-204ENST00000395245 1766 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
RNF220Q5VTB9 IQSEC2-218ENST00000640694 5958 ntAPPRIS ALT2 TSL 5 BASIC18.68■□□□□ 0.58
RNF220Q5VTB9 MADCAM1-201ENST00000215637 1572 ntAPPRIS P4 TSL 1 (best) BASIC18.68■□□□□ 0.58
RNF220Q5VTB9 ANTXR1-202ENST00000409349 1384 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
RNF220Q5VTB9 ALDH1A3-201ENST00000329841 3924 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
RNF220Q5VTB9 GSR-201ENST00000221130 3119 ntAPPRIS P3 TSL 1 (best) BASIC18.67■□□□□ 0.58
RNF220Q5VTB9 PTPA-203ENST00000348141 2737 ntTSL 5 BASIC18.67■□□□□ 0.58
RNF220Q5VTB9 PTPA-207ENST00000393370 2737 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
RNF220Q5VTB9 PDCD10-201ENST00000392750 2067 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
RNF220Q5VTB9 CDH24-204ENST00000487137 3438 ntAPPRIS P1 TSL 5 BASIC18.67■□□□□ 0.58
RNF220Q5VTB9 ICA1-201ENST00000265577 2309 ntAPPRIS ALT1 TSL 5 BASIC18.67■□□□□ 0.58
RNF220Q5VTB9 USP48-204ENST00000400301 4309 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
RNF220Q5VTB9 GPR3-201ENST00000374024 2115 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
RNF220Q5VTB9 RHOB-201ENST00000272233 2372 ntAPPRIS P1 BASIC18.67■□□□□ 0.58
RNF220Q5VTB9 MICU3-201ENST00000318063 3992 ntAPPRIS P2 TSL 1 (best) BASIC18.67■□□□□ 0.58
RNF220Q5VTB9 TNFRSF18-201ENST00000328596 851 ntAPPRIS P4 TSL 1 (best) BASIC18.67■□□□□ 0.58
RNF220Q5VTB9 CD58-201ENST00000369487 892 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
RNF220Q5VTB9 CD58-202ENST00000369489 1098 ntAPPRIS P3 TSL 1 (best) BASIC18.67■□□□□ 0.58
RNF220Q5VTB9 GXYLT1P2-201ENST00000433312 1230 ntBASIC18.67■□□□□ 0.58
RNF220Q5VTB9 HNRNPM-201ENST00000325495 2494 ntAPPRIS P4 TSL 1 (best) BASIC18.67■□□□□ 0.58
RNF220Q5VTB9 YBX3-201ENST00000228251 1796 ntAPPRIS P3 TSL 1 (best) BASIC18.67■□□□□ 0.58
RNF220Q5VTB9 CDC42SE2-206ENST00000503291 2025 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
RNF220Q5VTB9 PALM-201ENST00000264560 2755 ntAPPRIS ALT2 TSL 4 BASIC18.67■□□□□ 0.58
RNF220Q5VTB9 EML2-203ENST00000536630 2791 ntAPPRIS ALT2 TSL 2 BASIC18.67■□□□□ 0.58
RNF220Q5VTB9 LINC01356-201ENST00000401018 1819 ntTSL 2 BASIC18.67■□□□□ 0.58
RNF220Q5VTB9 THOP1-201ENST00000307741 4804 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
RNF220Q5VTB9 ZNF12-204ENST00000405858 5051 ntAPPRIS P4 TSL 1 (best) BASIC18.67■□□□□ 0.58
RNF220Q5VTB9 CBX2-202ENST00000310942 4644 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
RNF220Q5VTB9 LINC01184-201ENST00000499346 1380 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
RNF220Q5VTB9 LAD1-202ENST00000391967 2906 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
RNF220Q5VTB9 EP300-201ENST00000263253 9587 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
RNF220Q5VTB9 STK25-205ENST00000405883 1904 ntTSL 2 BASIC18.66■□□□□ 0.58
RNF220Q5VTB9 CASP16P-201ENST00000428155 1433 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
RNF220Q5VTB9 SCARB1-203ENST00000415380 2731 ntTSL 2 BASIC18.66■□□□□ 0.58
RNF220Q5VTB9 CNRIP1-201ENST00000263655 1953 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 23.4 ms