Protein–RNA interactions for Protein: P18848

ATF4, Cyclic AMP-dependent transcription factor ATF-4, humanhuman

Predicted RBP Predictions only

Length 351 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATF4P18848 PTP4A3-202ENST00000349124 2710 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
ATF4P18848 NOVA2-201ENST00000263257 7803 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
ATF4P18848 MID1IP1-201ENST00000336949 2536 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
ATF4P18848 SSC5D-202ENST00000587166 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC16.24■□□□□ 0.19
ATF4P18848 CCDC62-201ENST00000253079 3546 ntAPPRIS P2 TSL 1 (best) BASIC16.24■□□□□ 0.19
ATF4P18848 WIZ-201ENST00000263381 5695 ntAPPRIS P2 TSL 2 BASIC16.24■□□□□ 0.19
ATF4P18848 FO681492.1-201ENST00000623662 5321 ntAPPRIS P5 TSL 2 BASIC16.24■□□□□ 0.19
ATF4P18848 COL4A3BP-204ENST00000405807 2843 ntAPPRIS P1 TSL 5 BASIC16.24■□□□□ 0.19
ATF4P18848 SNRK-204ENST00000454177 2961 ntAPPRIS P1 TSL 2 BASIC16.24■□□□□ 0.19
ATF4P18848 ARNTL2-204ENST00000395901 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC16.24■□□□□ 0.19
ATF4P18848 HERC2P8-204ENST00000567073 1988 ntTSL 5 BASIC16.24■□□□□ 0.19
ATF4P18848 CEP78-204ENST00000415759 2623 ntAPPRIS ALT2 TSL 5 BASIC16.24■□□□□ 0.19
ATF4P18848 WT1-210ENST00000639563 1494 ntAPPRIS ALT2 TSL 1 (best) BASIC16.24■□□□□ 0.19
ATF4P18848 RRN3-205ENST00000563559 2128 ntTSL 5 BASIC16.24■□□□□ 0.19
ATF4P18848 DVL1-202ENST00000378891 2926 ntAPPRIS P3 TSL 1 (best) BASIC16.24■□□□□ 0.19
ATF4P18848 REPS2-201ENST00000303843 7771 ntAPPRIS ALT2 TSL 1 (best) BASIC16.24■□□□□ 0.19
ATF4P18848 PARD3-206ENST00000374776 3389 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
ATF4P18848 NECAB3-202ENST00000375238 1942 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
ATF4P18848 B4GALT2-204ENST00000434555 1923 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
ATF4P18848 CDH5-204ENST00000563425 1932 ntTSL 5 BASIC16.24■□□□□ 0.19
ATF4P18848 NR1H2-210ENST00000598168 1915 ntAPPRIS ALT2 TSL 5 BASIC16.24■□□□□ 0.19
ATF4P18848 FXYD7-201ENST00000270310 712 ntAPPRIS P2 TSL 1 (best) BASIC16.24■□□□□ 0.19
ATF4P18848 HYI-206ENST00000372434 1025 ntTSL 5 BASIC16.24■□□□□ 0.19
ATF4P18848 FDX2-202ENST00000393708 1012 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
ATF4P18848 PTMA-205ENST00000410064 814 ntTSL 2 BASIC16.24■□□□□ 0.19
ATF4P18848 RALB-203ENST00000420510 1252 ntAPPRIS P1 TSL 2 BASIC16.24■□□□□ 0.19
ATF4P18848 AC004707.1-201ENST00000511627 715 ntTSL 3 BASIC16.24■□□□□ 0.19
ATF4P18848 AP005435.1-201ENST00000529293 1178 ntBASIC16.24■□□□□ 0.19
ATF4P18848 SCO2-204ENST00000543927 1051 ntAPPRIS P1 TSL 2 BASIC16.24■□□□□ 0.19
ATF4P18848 TUBA1C-201ENST00000301072 3001 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
ATF4P18848 NCOA6-207ENST00000616167 3271 ntAPPRIS ALT2 TSL 5 BASIC16.24■□□□□ 0.19
ATF4P18848 NINL-201ENST00000278886 4969 ntAPPRIS P3 TSL 1 (best) BASIC16.24■□□□□ 0.19
ATF4P18848 HNRNPUL2-BSCL2-201ENST00000403734 4001 ntAPPRIS P1 TSL 2 BASIC16.24■□□□□ 0.19
ATF4P18848 LBX1-201ENST00000370193 2900 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
ATF4P18848 HMBS-201ENST00000278715 1501 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
ATF4P18848 PPFIA3-201ENST00000334186 4733 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
ATF4P18848 LEF1-AS1-207ENST00000512637 1675 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
ATF4P18848 FAM208A-209ENST00000493960 5600 ntAPPRIS P2 TSL 5 BASIC16.24■□□□□ 0.19
ATF4P18848 AC087482.1-204ENST00000636067 2431 ntTSL 5 BASIC16.24■□□□□ 0.19
ATF4P18848 TMEM97-201ENST00000226230 2568 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
ATF4P18848 UBE2R2-201ENST00000263228 4075 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
ATF4P18848 MAGI3-201ENST00000307546 6430 ntTSL 5 BASIC16.23■□□□□ 0.19
ATF4P18848 AL596257.1-201ENST00000641463 2694 ntBASIC16.23■□□□□ 0.19
ATF4P18848 BFSP1-205ENST00000536626 2075 ntTSL 2 BASIC16.23■□□□□ 0.19
ATF4P18848 ANKRD33B-201ENST00000296657 9188 ntAPPRIS P1 TSL 5 BASIC16.23■□□□□ 0.19
ATF4P18848 ERLEC1-203ENST00000405123 1756 ntTSL 5 BASIC16.23■□□□□ 0.19
ATF4P18848 TMCC2-209ENST00000637895 1455 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
ATF4P18848 PYGO2-201ENST00000368456 1306 ntTSL 2 BASIC16.23■□□□□ 0.19
ATF4P18848 PRDM12-201ENST00000253008 2476 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
ATF4P18848 ARNTL2-209ENST00000546179 1861 ntAPPRIS ALT2 TSL 2 BASIC16.23■□□□□ 0.19
ATF4P18848 QPCT-201ENST00000338415 1739 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
ATF4P18848 SH3BP4-202ENST00000392011 5194 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
ATF4P18848 BASP1-203ENST00000616743 1711 ntAPPRIS P1 TSL 3 BASIC16.23■□□□□ 0.19
ATF4P18848 AK4-207ENST00000545314 6887 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
ATF4P18848 SEPT6-202ENST00000354228 1576 ntAPPRIS P4 TSL 1 (best) BASIC16.23■□□□□ 0.19
ATF4P18848 ACSL1-205ENST00000504900 1583 ntTSL 5 BASIC16.23■□□□□ 0.19
ATF4P18848 PTK6-201ENST00000217185 2401 ntTSL 2 BASIC16.23■□□□□ 0.19
ATF4P18848 PALM3-201ENST00000340790 2262 ntAPPRIS P2 TSL 5 BASIC16.23■□□□□ 0.19
ATF4P18848 TEX264-204ENST00000415259 2290 ntAPPRIS P3 TSL 5 BASIC16.23■□□□□ 0.19
ATF4P18848 NEXN-AS1-201ENST00000421331 2292 ntTSL 2 BASIC16.23■□□□□ 0.19
ATF4P18848 SRM-201ENST00000376957 1266 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
ATF4P18848 PSMB11-201ENST00000408907 2110 ntAPPRIS P1 BASIC16.23■□□□□ 0.19
ATF4P18848 CROT-202ENST00000412227 1213 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
ATF4P18848 SERGEF-219ENST00000532265 1124 ntTSL 2 BASIC16.23■□□□□ 0.19
ATF4P18848 CAPNS1-205ENST00000588780 1035 ntAPPRIS ALT2 TSL 5 BASIC16.23■□□□□ 0.19
ATF4P18848 ACBD4-216ENST00000619916 1276 ntTSL 5 BASIC16.23■□□□□ 0.19
ATF4P18848 CHUK-201ENST00000370397 3625 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
ATF4P18848 SDCBP-202ENST00000413219 2086 ntAPPRIS P3 TSL 2 BASIC16.23■□□□□ 0.19
ATF4P18848 AC005906.2-203ENST00000640962 2091 ntTSL 5 BASIC16.23■□□□□ 0.19
ATF4P18848 ENKD1-206ENST00000602644 1353 ntTSL 5 BASIC16.23■□□□□ 0.19
ATF4P18848 PDE2A-226ENST00000544570 3119 ntTSL 5 BASIC16.23■□□□□ 0.19
ATF4P18848 SPOP-206ENST00000504102 1865 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
ATF4P18848 RTEL1-204ENST00000370003 2273 ntTSL 2 BASIC16.22■□□□□ 0.19
ATF4P18848 MAPK9-206ENST00000425491 2266 ntTSL 5 BASIC16.22■□□□□ 0.19
ATF4P18848 PTGES2-AS1-201ENST00000443493 2100 ntBASIC16.22■□□□□ 0.19
ATF4P18848 RHOF-201ENST00000267205 3009 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
ATF4P18848 TMPRSS5-202ENST00000536856 1811 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
ATF4P18848 CDC42BPG-201ENST00000342711 5742 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
ATF4P18848 XPA-201ENST00000375128 1417 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
ATF4P18848 RREB1-204ENST00000379938 8778 ntAPPRIS P3 TSL 1 (best) BASIC16.22■□□□□ 0.19
ATF4P18848 MRPL46-201ENST00000312475 1019 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
ATF4P18848 YJEFN3-201ENST00000436027 878 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
ATF4P18848 SLC47A1P1-202ENST00000449666 945 ntBASIC16.22■□□□□ 0.19
ATF4P18848 LGR4-203ENST00000480977 492 ntTSL 2 BASIC16.22■□□□□ 0.19
ATF4P18848 MIR4767-201ENST00000582827 78 ntBASIC16.22■□□□□ 0.19
ATF4P18848 AC007448.3-201ENST00000585193 689 ntTSL 2 BASIC16.22■□□□□ 0.19
ATF4P18848 FST-202ENST00000396947 2538 ntTSL 5 BASIC16.22■□□□□ 0.19
ATF4P18848 SMPD2-201ENST00000258052 1645 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
ATF4P18848 IKBKG-207ENST00000611071 2103 ntAPPRIS P3 TSL 1 (best) BASIC16.22■□□□□ 0.19
ATF4P18848 HNRNPM-217ENST00000620401 2458 ntAPPRIS ALT2 TSL 1 (best) BASIC16.22■□□□□ 0.19
ATF4P18848 AC018695.7-201ENST00000624587 2492 ntBASIC16.22■□□□□ 0.19
ATF4P18848 RNF167-205ENST00000571816 1728 ntAPPRIS P3 TSL 5 BASIC16.22■□□□□ 0.19
ATF4P18848 CENPS-CORT-201ENST00000400900 1469 ntTSL 2 BASIC16.22■□□□□ 0.19
ATF4P18848 HTATIP2-201ENST00000419348 1477 ntTSL 2 BASIC16.22■□□□□ 0.19
ATF4P18848 PCDHA12-202ENST00000613593 2588 ntBASIC16.22■□□□□ 0.19
ATF4P18848 ACD-201ENST00000219251 2052 ntAPPRIS P3 TSL 2 BASIC16.22■□□□□ 0.19
ATF4P18848 ZNF395-211ENST00000523202 2068 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
ATF4P18848 TRIM27-201ENST00000377194 2686 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
ATF4P18848 NPHP3-201ENST00000337331 4362 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
ATF4P18848 CACNB2-203ENST00000352115 1911 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 34.9 ms