Protein–RNA interactions for Protein: Q9H1E3

NUCKS1, Nuclear ubiquitous casein and cyclin-dependent kinase substrate 1, humanhuman

Known RBP Predictions only

Length 243 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUCKS1Q9H1E3 AC013269.1-201ENST00000409259 1653 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
NUCKS1Q9H1E3 TISP43-206ENST00000623376 1653 ntAPPRIS ALT2 TSL 1 (best) BASIC21.12■□□□□ 0.97
NUCKS1Q9H1E3 DMRT2-204ENST00000382251 2292 ntAPPRIS P1 TSL 5 BASIC21.12■□□□□ 0.97
NUCKS1Q9H1E3 CENPH-206ENST00000515001 1305 ntTSL 2 BASIC21.12■□□□□ 0.97
NUCKS1Q9H1E3 BRAF-201ENST00000288602 2480 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
NUCKS1Q9H1E3 UBE2Q2-204ENST00000561851 1582 ntTSL 2 BASIC21.12■□□□□ 0.97
NUCKS1Q9H1E3 NUDT22-201ENST00000279206 1094 ntAPPRIS P3 TSL 1 (best) BASIC21.12■□□□□ 0.97
NUCKS1Q9H1E3 C11orf86-201ENST00000308963 1187 ntAPPRIS P1 TSL 2 BASIC21.12■□□□□ 0.97
NUCKS1Q9H1E3 KRTAP5-8-201ENST00000398534 1183 ntAPPRIS P1 BASIC21.12■□□□□ 0.97
NUCKS1Q9H1E3 NUDT22-204ENST00000441250 986 ntAPPRIS ALT2 TSL 5 BASIC21.12■□□□□ 0.97
NUCKS1Q9H1E3 MCRIP1-203ENST00000538396 925 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
NUCKS1Q9H1E3 KRT18P6-201ENST00000555540 1265 ntBASIC21.12■□□□□ 0.97
NUCKS1Q9H1E3 AC068987.5-201ENST00000642069 987 ntAPPRIS P1 BASIC21.12■□□□□ 0.97
NUCKS1Q9H1E3 BSCL2-207ENST00000407022 1516 ntAPPRIS P3 TSL 1 (best) BASIC21.12■□□□□ 0.97
NUCKS1Q9H1E3 WIPF1-205ENST00000409415 1772 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
NUCKS1Q9H1E3 UBE2Z-201ENST00000360943 3122 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
NUCKS1Q9H1E3 LTBP4-201ENST00000204005 5032 ntAPPRIS ALT2 TSL 1 (best) BASIC21.12■□□□□ 0.97
NUCKS1Q9H1E3 VSTM2B-201ENST00000335523 1488 ntAPPRIS P1 TSL 5 BASIC21.12■□□□□ 0.97
NUCKS1Q9H1E3 MORF4L1-215ENST00000559345 1468 ntTSL 2 BASIC21.12■□□□□ 0.97
NUCKS1Q9H1E3 LPCAT3-201ENST00000261407 2268 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
NUCKS1Q9H1E3 LIN54-209ENST00000510557 2257 ntTSL 2 BASIC21.12■□□□□ 0.97
NUCKS1Q9H1E3 NR1H2-201ENST00000253727 1998 ntAPPRIS P2 TSL 1 (best) BASIC21.12■□□□□ 0.97
NUCKS1Q9H1E3 NBPF9-209ENST00000621645 5632 ntAPPRIS ALT2 TSL 2 BASIC21.12■□□□□ 0.97
NUCKS1Q9H1E3 EIF2B1-201ENST00000424014 2477 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
NUCKS1Q9H1E3 PPP1R36-201ENST00000298705 1405 ntAPPRIS P2 TSL 1 (best) BASIC21.12■□□□□ 0.97
NUCKS1Q9H1E3 NECAB3-202ENST00000375238 1942 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
NUCKS1Q9H1E3 KIF22-201ENST00000160827 2113 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
NUCKS1Q9H1E3 CENPN-201ENST00000299572 1398 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
NUCKS1Q9H1E3 CTBP2-202ENST00000334808 2130 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
NUCKS1Q9H1E3 ALDOA-212ENST00000564546 2104 ntAPPRIS P2 TSL 1 (best) BASIC21.11■□□□□ 0.97
NUCKS1Q9H1E3 NDUFA10-203ENST00000404554 1557 ntTSL 5 BASIC21.11■□□□□ 0.97
NUCKS1Q9H1E3 P3H4-201ENST00000355468 2791 ntAPPRIS P2 TSL 2 BASIC21.11■□□□□ 0.97
NUCKS1Q9H1E3 MIXL1-201ENST00000366810 2005 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
NUCKS1Q9H1E3 HCN2-201ENST00000251287 3408 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
NUCKS1Q9H1E3 NOTCH2NL-204ENST00000579793 1954 ntAPPRIS ALT2 TSL 2 BASIC21.11■□□□□ 0.97
NUCKS1Q9H1E3 PSPN-201ENST00000245810 471 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
NUCKS1Q9H1E3 FAM160B1-201ENST00000369246 666 ntTSL 2 BASIC21.11■□□□□ 0.97
NUCKS1Q9H1E3 CTBP1-AS2-203ENST00000507044 739 ntTSL 3 BASIC21.11■□□□□ 0.97
NUCKS1Q9H1E3 PTMS-207ENST00000619580 1150 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
NUCKS1Q9H1E3 SLC27A3-214ENST00000624995 2413 ntAPPRIS P2 TSL 1 (best) BASIC21.11■□□□□ 0.97
NUCKS1Q9H1E3 PITX2-203ENST00000355080 2100 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
NUCKS1Q9H1E3 GCGR-202ENST00000570996 1872 ntAPPRIS ALT2 TSL 2 BASIC21.11■□□□□ 0.97
NUCKS1Q9H1E3 CMTM7-201ENST00000334983 2038 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
NUCKS1Q9H1E3 C1orf198-201ENST00000366663 3858 ntAPPRIS P3 TSL 1 (best) BASIC21.1■□□□□ 0.97
NUCKS1Q9H1E3 TULP1-201ENST00000229771 2162 ntAPPRIS P2 TSL 1 (best) BASIC21.1■□□□□ 0.97
NUCKS1Q9H1E3 CAMKK1-202ENST00000348335 3563 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
NUCKS1Q9H1E3 MACROD2-201ENST00000217246 4994 ntAPPRIS P1 TSL 2 BASIC21.1■□□□□ 0.97
NUCKS1Q9H1E3 FAM206A-201ENST00000322940 2134 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
NUCKS1Q9H1E3 AKAIN1-201ENST00000434239 575 ntAPPRIS P1 TSL 2 BASIC21.1■□□□□ 0.97
NUCKS1Q9H1E3 AC007161.3-201ENST00000469183 637 ntTSL 5 BASIC21.1■□□□□ 0.97
NUCKS1Q9H1E3 AC097658.1-201ENST00000475555 843 ntBASIC21.1■□□□□ 0.97
NUCKS1Q9H1E3 FADS3-204ENST00000525588 1254 ntTSL 5 BASIC21.1■□□□□ 0.97
NUCKS1Q9H1E3 AC022509.3-202ENST00000545819 566 ntTSL 3 BASIC21.1■□□□□ 0.97
NUCKS1Q9H1E3 AC138028.5-201ENST00000566114 558 ntTSL 5 BASIC21.1■□□□□ 0.97
NUCKS1Q9H1E3 CDC14B-203ENST00000375242 2965 ntTSL 2 BASIC21.1■□□□□ 0.97
NUCKS1Q9H1E3 DLG3-202ENST00000374355 5074 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
NUCKS1Q9H1E3 AC004408.2-201ENST00000623613 2777 ntBASIC21.1■□□□□ 0.97
NUCKS1Q9H1E3 FAM66E-201ENST00000529252 1433 ntTSL 2 BASIC21.1■□□□□ 0.97
NUCKS1Q9H1E3 FAM66B-201ENST00000529456 1432 ntTSL 2 BASIC21.1■□□□□ 0.97
NUCKS1Q9H1E3 IDUA-201ENST00000247933 2163 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
NUCKS1Q9H1E3 RAB11B-201ENST00000328024 1751 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
NUCKS1Q9H1E3 TFP1-202ENST00000475455 1573 ntBASIC21.1■□□□□ 0.97
NUCKS1Q9H1E3 GIT1-201ENST00000225394 3768 ntAPPRIS P3 TSL 1 (best) BASIC21.1■□□□□ 0.97
NUCKS1Q9H1E3 ATIC-205ENST00000435675 2275 ntTSL 2 BASIC21.09■□□□□ 0.97
NUCKS1Q9H1E3 TOR2A-203ENST00000373284 1523 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
NUCKS1Q9H1E3 MFSD10-201ENST00000329687 2173 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
NUCKS1Q9H1E3 TMEM91-209ENST00000539627 1843 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
NUCKS1Q9H1E3 PDLIM2-205ENST00000397761 1491 ntAPPRIS P1 TSL 5 BASIC21.09■□□□□ 0.97
NUCKS1Q9H1E3 BZW1-209ENST00000452790 1473 ntTSL 2 BASIC21.09■□□□□ 0.97
NUCKS1Q9H1E3 PCDHA4-201ENST00000378125 2328 ntTSL 5 BASIC21.09■□□□□ 0.97
NUCKS1Q9H1E3 SLC38A11-203ENST00000409149 1621 ntAPPRIS P2 TSL 2 BASIC21.09■□□□□ 0.97
NUCKS1Q9H1E3 SPATA25-201ENST00000372519 757 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
NUCKS1Q9H1E3 AL390719.1-204ENST00000412397 1219 ntBASIC21.09■□□□□ 0.97
NUCKS1Q9H1E3 ZNF295-AS1-201ENST00000412906 952 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
NUCKS1Q9H1E3 AP000282.1-201ENST00000454622 682 ntTSL 2 BASIC21.09■□□□□ 0.97
NUCKS1Q9H1E3 LIMD2-206ENST00000578993 602 ntTSL 3 BASIC21.09■□□□□ 0.97
NUCKS1Q9H1E3 AL160396.2-202ENST00000636692 566 ntAPPRIS ALT2 TSL 5 BASIC21.09■□□□□ 0.97
NUCKS1Q9H1E3 YBX3-201ENST00000228251 1796 ntAPPRIS P3 TSL 1 (best) BASIC21.09■□□□□ 0.97
NUCKS1Q9H1E3 SLC1A6-202ENST00000430939 1794 ntTSL 2 BASIC21.09■□□□□ 0.97
NUCKS1Q9H1E3 STMN4-202ENST00000350889 2288 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
NUCKS1Q9H1E3 MYH14-206ENST00000596571 5988 ntAPPRIS ALT2 TSL 5 BASIC21.09■□□□□ 0.97
NUCKS1Q9H1E3 SPHK1-207ENST00000590959 1851 ntAPPRIS ALT2 TSL 1 (best) BASIC21.09■□□□□ 0.97
NUCKS1Q9H1E3 NHLH2-201ENST00000320238 2512 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
NUCKS1Q9H1E3 GCOM1-202ENST00000380569 1846 ntAPPRIS P3 TSL 2 BASIC21.08■□□□□ 0.97
NUCKS1Q9H1E3 FOXD2-201ENST00000334793 4675 ntAPPRIS P1 BASIC21.08■□□□□ 0.97
NUCKS1Q9H1E3 STX17-212ENST00000534052 2424 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
NUCKS1Q9H1E3 ENTPD6-201ENST00000354989 2708 ntAPPRIS ALT2 TSL 1 (best) BASIC21.08■□□□□ 0.97
NUCKS1Q9H1E3 SLC7A10-201ENST00000253188 1946 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
NUCKS1Q9H1E3 CHTOP-204ENST00000368694 2096 ntAPPRIS P3 TSL 1 (best) BASIC21.08■□□□□ 0.97
NUCKS1Q9H1E3 BID-202ENST00000342111 854 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
NUCKS1Q9H1E3 SDHC-201ENST00000342751 1127 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
NUCKS1Q9H1E3 MMD2-201ENST00000401401 2335 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
NUCKS1Q9H1E3 MRPL23-AS1-201ENST00000419080 1876 ntTSL 3 BASIC21.08■□□□□ 0.97
NUCKS1Q9H1E3 ISOC2-203ENST00000438389 1566 ntTSL 2 BASIC21.08■□□□□ 0.97
NUCKS1Q9H1E3 AL359182.2-201ENST00000457720 606 ntTSL 3 BASIC21.08■□□□□ 0.97
NUCKS1Q9H1E3 CD99P1-205ENST00000527459 561 ntBASIC21.08■□□□□ 0.97
NUCKS1Q9H1E3 SNX19-209ENST00000530356 1562 ntTSL 2 BASIC21.08■□□□□ 0.97
NUCKS1Q9H1E3 AC092143.2-201ENST00000554623 985 ntTSL 3 BASIC21.08■□□□□ 0.97
NUCKS1Q9H1E3 ACBD4-207ENST00000586346 1579 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
NUCKS1Q9H1E3 SYTL1-210ENST00000616558 1878 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 7.8 ms