Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 SPEG-203ENST00000396688 1457 ntTSL 3 BASIC18.96■□□□□ 0.63
CCDC28BQ9BUN5 BABAM1-208ENST00000598188 1470 ntAPPRIS P3 TSL 1 (best) BASIC18.96■□□□□ 0.63
CCDC28BQ9BUN5 CRACR2B-207ENST00000528542 1792 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
CCDC28BQ9BUN5 MTFR1L-202ENST00000374301 2099 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
CCDC28BQ9BUN5 ATF5-201ENST00000423777 2069 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
CCDC28BQ9BUN5 FARSA-207ENST00000588025 2057 ntTSL 5 BASIC18.96■□□□□ 0.63
CCDC28BQ9BUN5 FAM213A-206ENST00000615554 2213 ntAPPRIS P1 TSL 5 BASIC18.96■□□□□ 0.63
CCDC28BQ9BUN5 PCDHB18P-201ENST00000524813 2368 ntBASIC18.96■□□□□ 0.63
CCDC28BQ9BUN5 SORCS2-203ENST00000507866 6152 ntAPPRIS P2 TSL 1 (best) BASIC18.95■□□□□ 0.62
CCDC28BQ9BUN5 ADAMTS9-202ENST00000459780 2871 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
CCDC28BQ9BUN5 ITGB7-209ENST00000550743 2138 ntTSL 5 BASIC18.95■□□□□ 0.62
CCDC28BQ9BUN5 PGAM1-201ENST00000334828 1830 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
CCDC28BQ9BUN5 AC141586.3-201ENST00000562166 1838 ntBASIC18.95■□□□□ 0.62
CCDC28BQ9BUN5 DCST1-204ENST00000423025 2199 ntAPPRIS ALT2 TSL 2 BASIC18.95■□□□□ 0.62
CCDC28BQ9BUN5 WDTC1-201ENST00000319394 4819 ntAPPRIS ALT1 TSL 1 (best) BASIC18.95■□□□□ 0.62
CCDC28BQ9BUN5 YPEL5-205ENST00000402708 1735 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
CCDC28BQ9BUN5 CDHR1-201ENST00000332904 2694 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
CCDC28BQ9BUN5 CHPF-201ENST00000243776 3013 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
CCDC28BQ9BUN5 CEACAM4-201ENST00000221954 1205 ntAPPRIS P2 TSL 1 (best) BASIC18.95■□□□□ 0.62
CCDC28BQ9BUN5 KRT18P68-201ENST00000392293 1000 ntBASIC18.95■□□□□ 0.62
CCDC28BQ9BUN5 PGAP3-204ENST00000429199 970 ntTSL 2 BASIC18.95■□□□□ 0.62
CCDC28BQ9BUN5 RPUSD3-206ENST00000433535 1178 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
CCDC28BQ9BUN5 NEBL-AS1-202ENST00000439097 661 ntTSL 2 BASIC18.95■□□□□ 0.62
CCDC28BQ9BUN5 AC116614.1-201ENST00000456949 539 ntTSL 2 BASIC18.95■□□□□ 0.62
CCDC28BQ9BUN5 DHRS4L2-204ENST00000537912 918 ntTSL 2 BASIC18.95■□□□□ 0.62
CCDC28BQ9BUN5 CEACAM4-203ENST00000600925 899 ntAPPRIS ALT2 TSL 2 BASIC18.95■□□□□ 0.62
CCDC28BQ9BUN5 CD99-212ENST00000624481 1089 ntAPPRIS ALT2 TSL 2 BASIC18.95■□□□□ 0.62
CCDC28BQ9BUN5 SLC9A6-202ENST00000370698 4631 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
CCDC28BQ9BUN5 RSPO4-201ENST00000217260 2707 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
CCDC28BQ9BUN5 ERLIN1-203ENST00000421367 5792 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
CCDC28BQ9BUN5 WDR34-201ENST00000372715 1755 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
CCDC28BQ9BUN5 SLC29A2-201ENST00000311161 2262 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
CCDC28BQ9BUN5 TTLL10-203ENST00000379290 2283 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
CCDC28BQ9BUN5 SH2B1-202ENST00000337120 6043 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
CCDC28BQ9BUN5 GTF3C5-203ENST00000372099 1999 ntTSL 5 BASIC18.95■□□□□ 0.62
CCDC28BQ9BUN5 FAM57A-201ENST00000301324 2013 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
CCDC28BQ9BUN5 NFATC4-220ENST00000555393 2235 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
CCDC28BQ9BUN5 AC006333.2-201ENST00000607957 2099 ntBASIC18.94■□□□□ 0.62
CCDC28BQ9BUN5 ARHGDIA-202ENST00000400721 1568 ntTSL 2 BASIC18.94■□□□□ 0.62
CCDC28BQ9BUN5 C11orf80-214ENST00000532565 1948 ntAPPRIS ALT2 TSL 5 BASIC18.94■□□□□ 0.62
CCDC28BQ9BUN5 SPRYD7-204ENST00000613924 2285 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
CCDC28BQ9BUN5 CLN3-240ENST00000631023 1586 ntTSL 5 BASIC18.94■□□□□ 0.62
CCDC28BQ9BUN5 CORO6-210ENST00000580212 2345 ntTSL 5 BASIC18.94■□□□□ 0.62
CCDC28BQ9BUN5 CFAP77-203ENST00000393216 1638 ntAPPRIS ALT2 TSL 1 (best) BASIC18.94■□□□□ 0.62
CCDC28BQ9BUN5 TMEM8B-204ENST00000439587 2150 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
CCDC28BQ9BUN5 CLPSL2-201ENST00000360454 488 ntAPPRIS ALT2 TSL 1 (best) BASIC18.94■□□□□ 0.62
CCDC28BQ9BUN5 MLLT10-204ENST00000377091 905 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
CCDC28BQ9BUN5 ATP6V0B-205ENST00000472174 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
CCDC28BQ9BUN5 PLLP-204ENST00000569059 665 ntTSL 3 BASIC18.94■□□□□ 0.62
CCDC28BQ9BUN5 AC093762.2-201ENST00000641700 291 ntAPPRIS P1 BASIC18.94■□□□□ 0.62
CCDC28BQ9BUN5 IRF3-221ENST00000598808 1468 ntTSL 5 BASIC18.94■□□□□ 0.62
CCDC28BQ9BUN5 FOXP4-202ENST00000373057 3300 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
CCDC28BQ9BUN5 SERPINF2-202ENST00000382061 2265 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
CCDC28BQ9BUN5 PTPRE-201ENST00000254667 5331 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
CCDC28BQ9BUN5 ACTL6B-201ENST00000160382 1537 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
CCDC28BQ9BUN5 GCOM1-201ENST00000380568 1516 ntAPPRIS ALT2 TSL 2 BASIC18.94■□□□□ 0.62
CCDC28BQ9BUN5 PPM1D-204ENST00000629650 1525 ntTSL 5 BASIC18.94■□□□□ 0.62
CCDC28BQ9BUN5 MCIDAS-201ENST00000513312 1736 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
CCDC28BQ9BUN5 EVC-201ENST00000264956 6431 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
CCDC28BQ9BUN5 PRKCI-201ENST00000295797 4950 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
CCDC28BQ9BUN5 MAP3K11-210ENST00000532507 1812 ntTSL 2 BASIC18.93■□□□□ 0.62
CCDC28BQ9BUN5 TMEM91-209ENST00000539627 1843 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
CCDC28BQ9BUN5 SLC22A17-204ENST00000397267 2455 ntAPPRIS P4 TSL 5 BASIC18.93■□□□□ 0.62
CCDC28BQ9BUN5 AL390961.4-201ENST00000623958 2535 ntBASIC18.93■□□□□ 0.62
CCDC28BQ9BUN5 MORF4L1-215ENST00000559345 1468 ntTSL 2 BASIC18.93■□□□□ 0.62
CCDC28BQ9BUN5 AC019068.1-201ENST00000415226 552 ntTSL 4 BASIC18.93■□□□□ 0.62
CCDC28BQ9BUN5 KCNC4-204ENST00000438661 2953 ntAPPRIS ALT2 TSL 1 (best) BASIC18.93■□□□□ 0.62
CCDC28BQ9BUN5 TINAGL1-202ENST00000457433 2140 ntAPPRIS ALT2 TSL 2 BASIC18.93■□□□□ 0.62
CCDC28BQ9BUN5 AC037459.4-201ENST00000517384 585 ntTSL 4 BASIC18.93■□□□□ 0.62
CCDC28BQ9BUN5 BRWD1-AS2-201ENST00000603064 1028 ntBASIC18.93■□□□□ 0.62
CCDC28BQ9BUN5 C15orf56-202ENST00000623360 2129 ntTSL 2 BASIC18.93■□□□□ 0.62
CCDC28BQ9BUN5 SHISA5-220ENST00000619810 2385 ntTSL 2 BASIC18.93■□□□□ 0.62
CCDC28BQ9BUN5 ZNF623-203ENST00000526926 2612 ntAPPRIS ALT2 TSL 2 BASIC18.93■□□□□ 0.62
CCDC28BQ9BUN5 IL10RB-201ENST00000290200 1963 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
CCDC28BQ9BUN5 PSPC1-206ENST00000619300 2013 ntAPPRIS P1 TSL 5 BASIC18.93■□□□□ 0.62
CCDC28BQ9BUN5 C2CD2-202ENST00000380486 6345 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
CCDC28BQ9BUN5 DTX2-211ENST00000446600 2281 ntTSL 2 BASIC18.93■□□□□ 0.62
CCDC28BQ9BUN5 SDK1-202ENST00000404826 10397 ntAPPRIS P2 TSL 1 (best) BASIC18.93■□□□□ 0.62
CCDC28BQ9BUN5 AP005717.1-201ENST00000500705 1899 ntTSL 5 BASIC18.92■□□□□ 0.62
CCDC28BQ9BUN5 NTRK1-203ENST00000392302 2609 ntTSL 5 BASIC18.92■□□□□ 0.62
CCDC28BQ9BUN5 P3H4-202ENST00000393928 2601 ntAPPRIS P2 TSL 1 (best) BASIC18.92■□□□□ 0.62
CCDC28BQ9BUN5 SLC25A3-201ENST00000188376 1909 ntAPPRIS ALT1 TSL 1 (best) BASIC18.92■□□□□ 0.62
CCDC28BQ9BUN5 MICU2-201ENST00000382374 1920 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
CCDC28BQ9BUN5 CHAC1-205ENST00000617961 1498 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
CCDC28BQ9BUN5 GMPPA-213ENST00000622191 1473 ntTSL 5 BASIC18.92■□□□□ 0.62
CCDC28BQ9BUN5 CACTIN-201ENST00000221899 2797 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
CCDC28BQ9BUN5 TRIP4-201ENST00000261884 2045 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
CCDC28BQ9BUN5 RTCA-202ENST00000370126 538 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
CCDC28BQ9BUN5 FOXB2-201ENST00000376708 1299 ntAPPRIS P1 BASIC18.92■□□□□ 0.62
CCDC28BQ9BUN5 FTCDNL1-202ENST00000420128 1021 ntTSL 5 BASIC18.92■□□□□ 0.62
CCDC28BQ9BUN5 CDKN2A-210ENST00000530628 748 ntAPPRIS P1 TSL 5 BASIC18.92■□□□□ 0.62
CCDC28BQ9BUN5 HERPUD2-202ENST00000396081 3057 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
CCDC28BQ9BUN5 CHTOP-204ENST00000368694 2096 ntAPPRIS P3 TSL 1 (best) BASIC18.92■□□□□ 0.62
CCDC28BQ9BUN5 EIF4ENIF1-202ENST00000344710 3115 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
CCDC28BQ9BUN5 ATPAF2-206ENST00000474627 1564 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
CCDC28BQ9BUN5 ZBTB45-201ENST00000354590 2352 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
CCDC28BQ9BUN5 NAPRT-203ENST00000435154 1877 ntTSL 2 BASIC18.92■□□□□ 0.62
CCDC28BQ9BUN5 MARK1-202ENST00000366918 5169 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
CCDC28BQ9BUN5 PALM3-201ENST00000340790 2262 ntAPPRIS P2 TSL 5 BASIC18.91■□□□□ 0.62
CCDC28BQ9BUN5 SLC16A3-221ENST00000617373 2048 ntAPPRIS P1 TSL 5 BASIC18.91■□□□□ 0.62
Retrieved 100 of 98,524 protein–RNA pairs in 20.4 ms