Protein–RNA interactions for Protein: Q92900

UPF1, Regulator of nonsense transcripts 1, humanhuman

Known RBP eCLIP

Length 1,129 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1Q92900 MRPS18B-208ENST00000472267 1610 ntTSL 1 (best)12.8□□□□□ -0.361e-7■■■■□ 21.6
UPF1Q92900 MYBBP1A-205ENST00000571368 1995 ntTSL 220.41■□□□□ 0.862e-7■■■■□ 21.5
UPF1Q92900 MYBBP1A-209ENST00000573723 613 ntTSL 517.35■□□□□ 0.372e-7■■■■□ 21.5
UPF1Q92900 MYBBP1A-212ENST00000574934 1941 ntTSL 216.68■□□□□ 0.262e-7■■■■□ 21.5
UPF1Q92900 MYBBP1A-201ENST00000254718 4807 ntAPPRIS P3 TSL 1 (best) BASIC14.69□□□□□ -0.062e-7■■■■□ 21.5
UPF1Q92900 MYBBP1A-202ENST00000381556 4104 ntAPPRIS ALT2 TSL 5 BASIC11.56□□□□□ -0.562e-7■■■■□ 21.5
UPF1Q92900 MYBBP1A-207ENST00000573116 3795 ntAPPRIS ALT2 TSL 1 (best)10.55□□□□□ -0.722e-7■■■■□ 21.5
UPF1Q92900 NUBP2-206ENST00000565134 815 ntTSL 5 BASIC28.97■■■□□ 2.238e-7■■■■□ 21.5
UPF1Q92900 NUBP2-207ENST00000565603 995 ntTSL 326.94■■□□□ 1.98e-7■■■■□ 21.5
UPF1Q92900 NUBP2-216ENST00000569898 582 ntTSL 326.4■■□□□ 1.828e-7■■■■□ 21.5
UPF1Q92900 NUBP2-202ENST00000562263 811 ntTSL 326.02■■□□□ 1.768e-7■■■■□ 21.5
UPF1Q92900 CTBP1-201ENST00000290921 2297 ntTSL 1 (best) BASIC24.79■■□□□ 1.561e-7■■■■□ 21.5
UPF1Q92900 NUBP2-208ENST00000565987 1049 ntTSL 5 BASIC24.2■■□□□ 1.468e-7■■■■□ 21.5
UPF1Q92900 CTBP1-203ENST00000382952 2467 ntAPPRIS P1 TSL 1 (best) BASIC22.93■■□□□ 1.261e-7■■■■□ 21.5
UPF1Q92900 GGA1-203ENST00000343632 3159 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.686e-7■■■■□ 21.5
UPF1Q92900 GGA1-201ENST00000325180 2528 ntTSL 1 (best) BASIC17.38■□□□□ 0.376e-7■■■■□ 21.5
UPF1Q92900 GGA1-206ENST00000406772 3205 ntTSL 2 BASIC14.1□□□□□ -0.156e-7■■■■□ 21.5
UPF1Q92900 ATAD3B-201ENST00000308647 2448 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.168e-16■■■■□ 21.5
UPF1Q92900 ATAD3B-205ENST00000485748 3233 ntTSL 216.42■□□□□ 0.228e-16■■■■□ 21.5
UPF1Q92900 ATAD3B-204ENST00000474481 3367 ntTSL 215.88■□□□□ 0.138e-16■■■■□ 21.5
UPF1Q92900 ATAD3B-203ENST00000472194 4314 ntTSL 1 (best)12.76□□□□□ -0.378e-16■■■■□ 21.5
UPF1Q92900 ULK1-201ENST00000321867 5310 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.711e-6■■■■□ 21.5
UPF1Q92900 SERINC3-201ENST00000255175 1726 ntAPPRIS P1 TSL 5 BASIC16.76■□□□□ 0.272e-9■■■■□ 21.5
UPF1Q92900 SERINC3-202ENST00000342374 4445 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.352e-9■■■■□ 21.5
UPF1Q92900 SERINC3-203ENST00000411544 812 ntTSL 311.62□□□□□ -0.552e-9■■■■□ 21.5
UPF1Q92900 TSPAN14-202ENST00000341863 1037 ntTSL 5 BASIC25.56■■□□□ 1.685e-8■■■■□ 21.5
UPF1Q92900 GNB1-201ENST00000378609 3132 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.011e-11■■■■□ 21.5
UPF1Q92900 GNB1-210ENST00000615252 3048 ntTSL 5 BASIC21.18■□□□□ 0.981e-11■■■■□ 21.5
UPF1Q92900 GNB1-209ENST00000610897 3145 ntAPPRIS P1 TSL 5 BASIC19.56■□□□□ 0.721e-11■■■■□ 21.5
UPF1Q92900 MAP3K11-201ENST00000309100 3566 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.052e-6■■■■□ 21.5
UPF1Q92900 USB1-201ENST00000219281 2282 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.485e-19■■■■□ 21.5
UPF1Q92900 USB1-212ENST00000566082 3888 ntTSL 210.19□□□□□ -0.785e-19■■■■□ 21.5
UPF1Q92900 DIP2B-201ENST00000301180 8593 ntAPPRIS P1 TSL 5 BASIC8.4□□□□□ -1.072e-6■■■■□ 21.5
UPF1Q92900 ADAR-202ENST00000368474 6625 ntAPPRIS P3 TSL 1 (best) BASIC13.8□□□□□ -0.23e-7■■■■□ 21.5
UPF1Q92900 ADAR-201ENST00000368471 6515 ntAPPRIS ALT1 TSL 1 (best) BASIC11.09□□□□□ -0.633e-7■■■■□ 21.5
UPF1Q92900 SUMO3-201ENST00000332859 1807 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.392e-7■■■■□ 21.5
UPF1Q92900 SUMO3-204ENST00000411651 1921 ntTSL 2 BASIC21.88■■□□□ 1.092e-7■■■■□ 21.5
UPF1Q92900 SUMO3-203ENST00000397898 1779 ntTSL 3 BASIC19.49■□□□□ 0.712e-7■■■■□ 21.5
UPF1Q92900 SUMO3-206ENST00000479153 1736 ntTSL 217.04■□□□□ 0.322e-7■■■■□ 21.5
UPF1Q92900 TRABD-204ENST00000395829 1628 ntAPPRIS ALT2 TSL 5 BASIC25.06■■□□□ 1.62e-7■■■■□ 21.5
UPF1Q92900 TRABD-205ENST00000463233 2404 ntTSL 1 (best)21.54■■□□□ 1.042e-7■■■■□ 21.5
UPF1Q92900 TRABD-203ENST00000395827 2172 ntAPPRIS P3 TSL 5 BASIC20.61■□□□□ 0.892e-7■■■■□ 21.5
UPF1Q92900 TRABD-202ENST00000380909 2272 ntAPPRIS P3 TSL 5 BASIC20.29■□□□□ 0.842e-7■■■■□ 21.5
UPF1Q92900 TRABD-201ENST00000303434 2329 ntAPPRIS P3 TSL 1 (best) BASIC19.53■□□□□ 0.722e-7■■■■□ 21.5
UPF1Q92900 RCSD1-206ENST00000537350 3044 ntAPPRIS ALT2 TSL 1 (best) BASIC16.24■□□□□ 0.195e-7■■■■□ 21.4
UPF1Q92900 RCSD1-202ENST00000367854 3135 ntAPPRIS P3 TSL 1 (best) BASIC15.63■□□□□ 0.095e-7■■■■□ 21.4
UPF1Q92900 CNDP2-201ENST00000324262 5130 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.145e-7■■■■□ 21.4
UPF1Q92900 CNDP2-209ENST00000579847 2653 ntAPPRIS P1 TSL 5 BASIC12.41□□□□□ -0.425e-7■■■■□ 21.4
UPF1Q92900 CNDP2-202ENST00000324301 2349 ntTSL 1 (best) BASIC12.41□□□□□ -0.425e-7■■■■□ 21.4
UPF1Q92900 CNDP2-208ENST00000579624 1176 ntTSL 511.9□□□□□ -0.55e-7■■■■□ 21.4
UPF1Q92900 CNDP2-226ENST00000584581 4523 ntTSL 211.09□□□□□ -0.635e-7■■■■□ 21.4
UPF1Q92900 ZNRF1-206ENST00000567962 1234 ntAPPRIS P1 TSL 1 (best) BASIC32.04■■■□□ 2.723e-6■■■■□ 21.4
UPF1Q92900 EPB41L4A-AS1-202ENST00000427306 1367 ntTSL 231.07■■■□□ 2.563e-6■■■■□ 21.4
UPF1Q92900 EPB41L4A-AS1-204ENST00000508590 292 ntTSL 326.68■■□□□ 1.863e-6■■■■□ 21.4
UPF1Q92900 TLE3-216ENST00000559191 1575 ntTSL 5 BASIC26.49■■□□□ 1.835e-6■■■■□ 21.4
UPF1Q92900 EPB41L4A-AS1-203ENST00000442823 578 ntTSL 225.95■■□□□ 1.743e-6■■■■□ 21.4
UPF1Q92900 ZNRF1-201ENST00000320619 2479 ntTSL 1 (best) BASIC24.34■■□□□ 1.493e-6■■■■□ 21.4
UPF1Q92900 TLE3-218ENST00000559608 519 ntTSL 222.19■■□□□ 1.145e-6■■■■□ 21.4
UPF1Q92900 RHOA-206ENST00000454011 889 ntTSL 2 BASIC21.62■■□□□ 1.059e-24■■■■□ 21.4
UPF1Q92900 ZNRF1-207ENST00000568351 964 ntTSL 320.97■□□□□ 0.953e-6■■■■□ 21.4
UPF1Q92900 GNA12-205ENST00000471281 1205 ntTSL 320.96■□□□□ 0.953e-6■■■■□ 21.4
UPF1Q92900 SLC41A3-211ENST00000508835 1480 ntTSL 2 BASIC20.55■□□□□ 0.883e-6■■■■□ 21.4
UPF1Q92900 GRK6-201ENST00000355472 2939 ntAPPRIS P3 TSL 1 (best) BASIC20.07■□□□□ 0.83e-6■■■■□ 21.4
UPF1Q92900 CORO1C-204ENST00000541050 2487 ntAPPRIS P1 TSL 2 BASIC19.53■□□□□ 0.728e-18■■■■□ 21.4
UPF1Q92900 ZNRF1-202ENST00000335325 4620 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.693e-6■■■■□ 21.4
UPF1Q92900 CACNA2D4-217ENST00000545595 1615 ntTSL 1 (best)18.57■□□□□ 0.563e-6■■■■□ 21.4
UPF1Q92900 TLE3-205ENST00000539550 2464 ntTSL 2 BASIC18.25■□□□□ 0.515e-6■■■■□ 21.4
UPF1Q92900 CACNA2D4-209ENST00000538450 1498 ntTSL 2 BASIC18.2■□□□□ 0.53e-6■■■■□ 21.4
UPF1Q92900 CORO1C-206ENST00000546705 577 ntTSL 318.02■□□□□ 0.488e-18■■■■□ 21.4
UPF1Q92900 TLE3-202ENST00000440567 2657 ntTSL 2 BASIC17.23■□□□□ 0.355e-6■■■■□ 21.4
UPF1Q92900 TLE3-212ENST00000558201 2766 ntTSL 5 BASIC16.91■□□□□ 0.35e-6■■■■□ 21.4
UPF1Q92900 GRK6-203ENST00000393576 2792 ntTSL 5 BASIC16.66■□□□□ 0.263e-6■■■■□ 21.4
UPF1Q92900 KLF3-201ENST00000261438 5122 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.253e-6■■■■□ 21.4
UPF1Q92900 TLE3-223ENST00000560939 3021 ntTSL 5 BASIC16.36■□□□□ 0.215e-6■■■■□ 21.4
UPF1Q92900 GRK6-210ENST00000515666 2141 ntTSL 516.34■□□□□ 0.213e-6■■■■□ 21.4
UPF1Q92900 ZNRF1-208ENST00000568494 2046 ntTSL 215.98■□□□□ 0.153e-6■■■■□ 21.4
UPF1Q92900 TLE3-215ENST00000559048 2918 ntTSL 2 BASIC15.93■□□□□ 0.145e-6■■■■□ 21.4
UPF1Q92900 HEG1-203ENST00000480667 544 ntTSL 415.3■□□□□ 0.043e-6■■■■□ 21.4
UPF1Q92900 EPB41L4A-AS1-201ENST00000413221 2969 ntTSL 1 (best) BASIC14.98□□□□□ -0.013e-6■■■■□ 21.4
UPF1Q92900 GRK6-211ENST00000528793 2571 ntTSL 1 (best) BASIC14.92□□□□□ -0.023e-6■■■■□ 21.4
UPF1Q92900 MAPRE2-201ENST00000300249 4265 ntAPPRIS P3 TSL 1 (best) BASIC14.2□□□□□ -0.143e-7■■■■□ 21.4
UPF1Q92900 TLE3-211ENST00000557997 3683 ntAPPRIS ALT1 TSL 1 (best) BASIC13.74□□□□□ -0.215e-6■■■■□ 21.4
UPF1Q92900 TLE3-225ENST00000561453 3719 ntTSL 513.49□□□□□ -0.255e-6■■■■□ 21.4
UPF1Q92900 ZNRF1-203ENST00000564320 607 ntTSL 313.46□□□□□ -0.253e-6■■■■□ 21.4
UPF1Q92900 ZNRF1-210ENST00000568844 5331 nt13.37□□□□□ -0.273e-6■■■■□ 21.4
UPF1Q92900 CACNA2D4-201ENST00000280663 5936 ntTSL 213.13□□□□□ -0.313e-6■■■■□ 21.4
UPF1Q92900 CASKIN2-202ENST00000433559 3950 ntTSL 2 BASIC12.91□□□□□ -0.343e-6■■■■□ 21.4
UPF1Q92900 CACNA2D4-202ENST00000382722 5475 ntAPPRIS P2 TSL 1 (best) BASIC12.56□□□□□ -0.43e-6■■■■□ 21.4
UPF1Q92900 MAPRE2-204ENST00000538170 4093 ntTSL 2 BASIC11.67□□□□□ -0.543e-7■■■■□ 21.4
UPF1Q92900 CACNA2D4-206ENST00000537784 2876 ntTSL 1 (best)11.65□□□□□ -0.543e-6■■■■□ 21.4
UPF1Q92900 ZNRF1-204ENST00000566244 3980 nt10.34□□□□□ -0.753e-6■■■■□ 21.4
UPF1Q92900 CACNA2D4-203ENST00000444595 4450 ntTSL 1 (best)10.03□□□□□ -0.83e-6■■■■□ 21.4
UPF1Q92900 MAPRE2-203ENST00000436190 4323 ntTSL 2 BASIC7.88□□□□□ -1.153e-7■■■■□ 21.4
UPF1Q92900 MAPRE2-211ENST00000589699 4080 ntAPPRIS ALT1 TSL 2 BASIC7.65□□□□□ -1.183e-7■■■■□ 21.4
UPF1Q92900 MAPRE2-202ENST00000413393 4173 ntAPPRIS ALT1 TSL 5 BASIC5.78□□□□□ -1.483e-7■■■■□ 21.4
UPF1Q92900 CSNK2A1-210ENST00000619801 655 ntTSL 312.56□□□□□ -0.48e-9■■■■□ 21.4
UPF1Q92900 CSNK2A1-204ENST00000400227 1499 ntTSL 1 (best) BASIC12.45□□□□□ -0.428e-9■■■■□ 21.4
UPF1Q92900 CSNK2A1-202ENST00000349736 4299 ntAPPRIS P1 TSL 1 (best) BASIC9.82□□□□□ -0.848e-9■■■■□ 21.4
UPF1Q92900 CSNK2A1-201ENST00000217244 4416 ntAPPRIS P1 TSL 1 (best) BASIC8.98□□□□□ -0.978e-9■■■■□ 21.4
UPF1Q92900 ERMAP-202ENST00000372514 3369 ntAPPRIS P2 TSL 1 (best) BASIC9.23□□□□□ -0.936e-7■■■■□ 21.4
Retrieved 100 of 15,879 protein–RNA pairs in 164.8 ms