Protein–RNA interactions for Protein: Q8NHQ9

DDX55, ATP-dependent RNA helicase DDX55, humanhuman

Known RBP eCLIP

Length 600 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55Q8NHQ9 RETSAT-203ENST00000429806 2335 ntTSL 1 (best)13.34□□□□□ -0.273e-10■■□□□ 12.4
DDX55Q8NHQ9 RETSAT-201ENST00000295802 3100 ntAPPRIS P1 TSL 1 (best) BASIC10.64□□□□□ -0.713e-10■■□□□ 12.4
DDX55Q8NHQ9 DOHH-201ENST00000427575 2031 ntAPPRIS P1 TSL 1 (best) BASIC24.11■■□□□ 1.451e-10■■□□□ 12.4
DDX55Q8NHQ9 POLD1-202ENST00000593407 867 ntTSL 522.63■■□□□ 1.211e-10■■□□□ 12.4
DDX55Q8NHQ9 TMEM219-209ENST00000602948 588 ntTSL 222.41■■□□□ 1.181e-10■■□□□ 12.4
DDX55Q8NHQ9 TMEM219-201ENST00000279396 999 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.951e-10■■□□□ 12.4
DDX55Q8NHQ9 TMEM219-203ENST00000561899 1249 ntAPPRIS P1 TSL 2 BASIC18.49■□□□□ 0.551e-10■■□□□ 12.4
DDX55Q8NHQ9 TMEM219-204ENST00000566848 1292 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.391e-10■■□□□ 12.4
DDX55Q8NHQ9 TMEM219-202ENST00000414689 1024 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.391e-10■■□□□ 12.4
DDX55Q8NHQ9 TMEM219-208ENST00000575829 721 ntTSL 515.93■□□□□ 0.141e-10■■□□□ 12.4
DDX55Q8NHQ9 TMEM219-207ENST00000570255 926 ntTSL 214.18□□□□□ -0.141e-10■■□□□ 12.4
DDX55Q8NHQ9 UBE2M-203ENST00000595957 734 ntTSL 217.48■□□□□ 0.393e-6■■□□□ 12.4
DDX55Q8NHQ9 AKT2-210ENST00000424901 5170 ntTSL 5 BASIC22.8■■□□□ 1.242e-6■■□□□ 12.4
DDX55Q8NHQ9 AKT2-206ENST00000392038 5300 ntAPPRIS P1 TSL 1 (best) BASIC22.68■■□□□ 1.222e-6■■□□□ 12.4
DDX55Q8NHQ9 AKT2-218ENST00000483166 4454 ntTSL 214.22□□□□□ -0.132e-6■■□□□ 12.4
DDX55Q8NHQ9 AKT2-216ENST00000476266 3309 ntTSL 513.15□□□□□ -0.32e-6■■□□□ 12.4
DDX55Q8NHQ9 F7-201ENST00000346342 2409 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.56e-7■■□□□ 12.4
DDX55Q8NHQ9 F7-206ENST00000541084 2873 ntTSL 2 BASIC11.99□□□□□ -0.496e-7■■□□□ 12.4
DDX55Q8NHQ9 F7-202ENST00000375581 3109 ntAPPRIS P4 TSL 1 (best) BASIC11.81□□□□□ -0.526e-7■■□□□ 12.4
DDX55Q8NHQ9 PGGHG-206ENST00000476372 2879 ntTSL 216.75■□□□□ 0.274e-7■■□□□ 12.4
DDX55Q8NHQ9 PGGHG-205ENST00000474221 4418 ntTSL 215.49■□□□□ 0.074e-7■■□□□ 12.4
DDX55Q8NHQ9 PGGHG-204ENST00000409655 2963 ntTSL 1 (best) BASIC14.29□□□□□ -0.124e-7■■□□□ 12.4
DDX55Q8NHQ9 PGGHG-203ENST00000409548 3687 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.254e-7■■□□□ 12.4
DDX55Q8NHQ9 SQLE-206ENST00000523430 1879 ntTSL 2 BASIC23.43■■□□□ 1.345e-10■■□□□ 12.4
DDX55Q8NHQ9 SQLE-201ENST00000265896 2961 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.345e-10■■□□□ 12.4
DDX55Q8NHQ9 NEU4-206ENST00000415936 860 ntTSL 322.71■■□□□ 1.232e-7■■□□□ 12.4
DDX55Q8NHQ9 HDAC6-220ENST00000477528 4832 ntTSL 1 (best)15.42■□□□□ 0.068e-10■■□□□ 12.3
DDX55Q8NHQ9 HDAC6-230ENST00000488543 2484 ntTSL 213.8□□□□□ -0.28e-10■■□□□ 12.3
DDX55Q8NHQ9 HDAC6-201ENST00000334136 4190 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.338e-10■■□□□ 12.3
DDX55Q8NHQ9 HDAC6-207ENST00000430858 618 ntTSL 312□□□□□ -0.498e-10■■□□□ 12.3
DDX55Q8NHQ9 HDAC6-228ENST00000486227 4718 ntTSL 211.8□□□□□ -0.528e-10■■□□□ 12.3
DDX55Q8NHQ9 HDAC6-203ENST00000376619 4179 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.558e-10■■□□□ 12.3
DDX55Q8NHQ9 SH3PXD2A-203ENST00000369774 11468 ntAPPRIS ALT2 TSL 5 BASIC14.37□□□□□ -0.118e-8■■□□□ 12.3
DDX55Q8NHQ9 SH3PXD2A-201ENST00000315994 5504 ntTSL 1 (best)13.57□□□□□ -0.248e-8■■□□□ 12.3
DDX55Q8NHQ9 SH3PXD2A-202ENST00000355946 11245 ntAPPRIS P2 TSL 1 (best) BASIC9.37□□□□□ -0.918e-8■■□□□ 12.3
DDX55Q8NHQ9 TKFC-206ENST00000525366 916 ntTSL 222.96■■□□□ 1.278e-18■■□□□ 12.3
DDX55Q8NHQ9 TKFC-219ENST00000534084 964 ntTSL 315.22■□□□□ 0.038e-18■■□□□ 12.3
DDX55Q8NHQ9 TKFC-201ENST00000394900 4696 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.048e-18■■□□□ 12.3
DDX55Q8NHQ9 CNIH1-206ENST00000557659 856 ntTSL 213.81□□□□□ -0.23e-15■■□□□ 12.3
DDX55Q8NHQ9 CNIH1-207ENST00000557690 838 ntTSL 3 BASIC13.75□□□□□ -0.213e-15■■□□□ 12.3
DDX55Q8NHQ9 CNIH1-202ENST00000395573 1233 ntTSL 1 (best) BASIC13.75□□□□□ -0.213e-15■■□□□ 12.3
DDX55Q8NHQ9 CNIH1-203ENST00000553660 785 ntTSL 2 BASIC12.99□□□□□ -0.333e-15■■□□□ 12.3
DDX55Q8NHQ9 CNIH1-201ENST00000216416 4793 ntAPPRIS P2 TSL 1 (best) BASIC7.4□□□□□ -1.223e-15■■□□□ 12.3
DDX55Q8NHQ9 APH1A-203ENST00000369109 1713 ntAPPRIS P4 TSL 1 (best) BASIC18.82■□□□□ 0.64e-10■■□□□ 12.3
DDX55Q8NHQ9 APH1A-202ENST00000360244 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC18.71■□□□□ 0.594e-10■■□□□ 12.3
DDX55Q8NHQ9 APH1A-204ENST00000414276 1718 ntTSL 2 BASIC18.64■□□□□ 0.574e-10■■□□□ 12.3
DDX55Q8NHQ9 GUK1-234ENST00000492871 1065 ntTSL 331.72■■■□□ 2.672e-12■■□□□ 12.3
DDX55Q8NHQ9 GUK1-215ENST00000462807 628 ntTSL 231.62■■■□□ 2.656e-22■■□□□ 12.3
DDX55Q8NHQ9 GUK1-227ENST00000485083 871 ntTSL 330.94■■■□□ 2.546e-22■■□□□ 12.3
DDX55Q8NHQ9 GUK1-235ENST00000493138 694 ntTSL 330.94■■■□□ 2.542e-12■■□□□ 12.3
DDX55Q8NHQ9 GUK1-208ENST00000366728 842 ntTSL 2 BASIC30.01■■■□□ 2.392e-12■■□□□ 12.3
DDX55Q8NHQ9 GUK1-205ENST00000366722 850 ntTSL 3 BASIC27.76■■■□□ 2.032e-12■■□□□ 12.3
DDX55Q8NHQ9 GUK1-207ENST00000366726 873 ntAPPRIS P3 TSL 3 BASIC26.74■■□□□ 1.872e-12■■□□□ 12.3
DDX55Q8NHQ9 GUK1-213ENST00000453943 656 ntTSL 1 (best)26.29■■□□□ 1.82e-12■■□□□ 12.3
DDX55Q8NHQ9 GUK1-201ENST00000312726 1084 ntAPPRIS P3 TSL 1 (best) BASIC25.32■■□□□ 1.642e-12■■□□□ 12.3
DDX55Q8NHQ9 GUK1-209ENST00000366730 937 ntAPPRIS P3 TSL 3 BASIC25.24■■□□□ 1.632e-12■■□□□ 12.3
DDX55Q8NHQ9 GUK1-236ENST00000493209 735 ntTSL 524.23■■□□□ 1.476e-22■■□□□ 12.3
DDX55Q8NHQ9 GUK1-204ENST00000366721 689 ntTSL 3 BASIC23.24■■□□□ 1.312e-12■■□□□ 12.3
DDX55Q8NHQ9 GUK1-230ENST00000485838 774 ntTSL 322.86■■□□□ 1.252e-12■■□□□ 12.3
DDX55Q8NHQ9 GUK1-202ENST00000366716 940 ntAPPRIS P3 TSL 1 (best) BASIC21.23■□□□□ 0.992e-12■■□□□ 12.3
DDX55Q8NHQ9 GUK1-231ENST00000485859 325 ntTSL 1 (best)21.13■□□□□ 0.976e-22■■□□□ 12.3
DDX55Q8NHQ9 GUK1-203ENST00000366718 1275 ntAPPRIS P3 TSL 3 BASIC20.79■□□□□ 0.922e-12■■□□□ 12.3
DDX55Q8NHQ9 GUK1-228ENST00000485168 737 ntTSL 320.59■□□□□ 0.896e-22■■□□□ 12.3
DDX55Q8NHQ9 GUK1-210ENST00000391865 990 ntAPPRIS ALT1 TSL 1 (best) BASIC20.15■□□□□ 0.822e-12■■□□□ 12.3
DDX55Q8NHQ9 GUK1-237ENST00000495999 555 ntTSL 319.44■□□□□ 0.72e-12■■□□□ 12.3
DDX55Q8NHQ9 GUK1-214ENST00000460224 639 ntTSL 519.07■□□□□ 0.646e-22■■□□□ 12.3
DDX55Q8NHQ9 GUK1-238ENST00000498092 865 ntTSL 518.49■□□□□ 0.556e-22■■□□□ 12.3
DDX55Q8NHQ9 GUK1-206ENST00000366723 845 ntTSL 5 BASIC18.4■□□□□ 0.542e-12■■□□□ 12.3
DDX55Q8NHQ9 STC2-201ENST00000265087 5353 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.432e-24■■□□□ 12.3
DDX55Q8NHQ9 GUK1-223ENST00000478725 414 ntTSL 316.88■□□□□ 0.296e-22■■□□□ 12.3
DDX55Q8NHQ9 GUK1-211ENST00000412265 1012 ntTSL 516.67■□□□□ 0.262e-12■■□□□ 12.3
DDX55Q8NHQ9 GUK1-226ENST00000484953 273 ntTSL 216.61■□□□□ 0.256e-22■■□□□ 12.3
DDX55Q8NHQ9 GUK1-221ENST00000472939 314 ntTSL 316.5■□□□□ 0.236e-22■■□□□ 12.3
DDX55Q8NHQ9 GUK1-232ENST00000486668 738 ntTSL 316.02■□□□□ 0.162e-12■■□□□ 12.3
DDX55Q8NHQ9 GUK1-219ENST00000470040 2548 ntTSL 215.7■□□□□ 0.12e-12■■□□□ 12.3
DDX55Q8NHQ9 GUK1-212ENST00000435153 865 ntTSL 315.42■□□□□ 0.062e-12■■□□□ 12.3
DDX55Q8NHQ9 GUK1-229ENST00000485733 345 ntTSL 314.87□□□□□ -0.036e-22■■□□□ 12.3
DDX55Q8NHQ9 DCXR-221ENST00000585164 475 ntTSL 526.07■■□□□ 1.762e-12■■□□□ 12.3
DDX55Q8NHQ9 DCXR-209ENST00000579155 430 ntTSL 522.61■■□□□ 1.212e-12■■□□□ 12.3
DDX55Q8NHQ9 DCXR-204ENST00000577712 429 ntTSL 520.08■□□□□ 0.812e-12■■□□□ 12.3
DDX55Q8NHQ9 SDC1-203ENST00000403076 1523 ntTSL 1 (best) BASIC21.17■□□□□ 0.984e-9■■□□□ 12.3
DDX55Q8NHQ9 BAP1-204ENST00000469613 1654 ntTSL 1 (best)20.35■□□□□ 0.852e-6■■□□□ 12.3
DDX55Q8NHQ9 BAP1-202ENST00000460680 3937 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.442e-6■■□□□ 12.3
DDX55Q8NHQ9 BAP1-201ENST00000296288 3434 ntTSL 5 BASIC11.16□□□□□ -0.622e-6■■□□□ 12.3
DDX55Q8NHQ9 CTXN1-201ENST00000318978 1274 ntAPPRIS P1 TSL 1 (best) BASIC31.04■■■□□ 2.563e-6■■□□□ 12.3
DDX55Q8NHQ9 PAXX-206ENST00000492564 701 ntTSL 325.03■■□□□ 1.63e-6■■□□□ 12.3
DDX55Q8NHQ9 TRIM41-208ENST00000515499 914 ntTSL 324.95■■□□□ 1.583e-6■■□□□ 12.3
DDX55Q8NHQ9 NCSTN-201ENST00000294785 2936 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.127e-7■■□□□ 12.3
DDX55Q8NHQ9 NCSTN-202ENST00000368063 3031 ntTSL 1 (best) BASIC14.01□□□□□ -0.177e-7■■□□□ 12.3
DDX55Q8NHQ9 DPP7-210ENST00000483783 958 ntTSL 227.04■■□□□ 1.923e-8■■□□□ 12.3
DDX55Q8NHQ9 DPP7-203ENST00000463619 775 ntTSL 317.67■□□□□ 0.423e-8■■□□□ 12.3
DDX55Q8NHQ9 DPP7-204ENST00000470766 478 ntTSL 217.22■□□□□ 0.353e-8■■□□□ 12.3
DDX55Q8NHQ9 AKR7A2-201ENST00000235835 1362 ntAPPRIS P1 TSL 1 (best) BASIC25.13■■□□□ 1.615e-16■■□□□ 12.3
DDX55Q8NHQ9 AKR7A2-202ENST00000330072 1171 ntTSL 222.78■■□□□ 1.245e-16■■□□□ 12.3
DDX55Q8NHQ9 PGD-201ENST00000270776 1885 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.235e-16■■□□□ 12.3
DDX55Q8NHQ9 POLR2C-201ENST00000219252 2057 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.89e-7■■□□□ 12.3
DDX55Q8NHQ9 RPS17-201ENST00000330244 592 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.931e-40■■□□□ 12.3
DDX55Q8NHQ9 RPS17-210ENST00000561440 1922 ntTSL 218.13■□□□□ 0.491e-40■■□□□ 12.3
DDX55Q8NHQ9 RPS17-205ENST00000560229 776 ntTSL 1 (best)17.05■□□□□ 0.321e-40■■□□□ 12.3
DDX55Q8NHQ9 RPS17-206ENST00000560612 1877 ntTSL 28.81□□□□□ -11e-40■■□□□ 12.3
Retrieved 100 of 15,504 protein–RNA pairs in 101.9 ms