Protein–RNA interactions for Protein: Q86UV5

USP48, Ubiquitin carboxyl-terminal hydrolase 48, humanhuman

Predictions only

Length 1,035 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP48Q86UV5 SSH3-202ENST00000308298 2046 ntTSL 2 BASIC23.9■■□□□ 1.42
USP48Q86UV5 USP39-204ENST00000409766 2033 ntTSL 2 BASIC23.9■■□□□ 1.42
USP48Q86UV5 C7orf43-206ENST00000456769 2046 ntTSL 2 BASIC23.9■■□□□ 1.42
USP48Q86UV5 HSCB-201ENST00000216027 1114 ntAPPRIS P1 TSL 1 (best) BASIC23.9■■□□□ 1.42
USP48Q86UV5 NDUFB10-201ENST00000268668 705 ntAPPRIS P1 TSL 1 (best) BASIC23.9■■□□□ 1.42
USP48Q86UV5 TSPY8-201ENST00000287721 1161 ntAPPRIS P5 TSL 1 (best) BASIC23.9■■□□□ 1.42
USP48Q86UV5 DNAJC4-201ENST00000321460 1015 ntAPPRIS ALT2 TSL 1 (best) BASIC23.9■■□□□ 1.42
USP48Q86UV5 UBE2C-206ENST00000405520 641 ntTSL 2 BASIC23.9■■□□□ 1.42
USP48Q86UV5 TSPY10-201ENST00000428845 1161 ntAPPRIS P5 TSL 1 (best) BASIC23.9■■□□□ 1.42
USP48Q86UV5 AL445645.1-201ENST00000451318 1019 ntTSL 2 BASIC23.9■■□□□ 1.42
USP48Q86UV5 TSPY3-203ENST00000457222 1161 ntAPPRIS P5 TSL 1 (best) BASIC23.9■■□□□ 1.42
USP48Q86UV5 RPH3AL-203ENST00000536489 1235 ntTSL 2 BASIC23.9■■□□□ 1.42
USP48Q86UV5 KDM2B-217ENST00000543852 1188 ntTSL 5 BASIC23.9■■□□□ 1.42
USP48Q86UV5 AKTIP-212ENST00000570004 1162 ntAPPRIS P3 TSL 1 (best) BASIC23.9■■□□□ 1.42
USP48Q86UV5 UBE2C-208ENST00000617055 705 ntTSL 3 BASIC23.9■■□□□ 1.42
USP48Q86UV5 NECAB3-201ENST00000246190 1989 ntTSL 5 BASIC23.9■■□□□ 1.42
USP48Q86UV5 GCSH-201ENST00000315467 1597 ntAPPRIS P1 TSL 1 (best) BASIC23.9■■□□□ 1.42
USP48Q86UV5 NGEF-202ENST00000373552 2286 ntAPPRIS P1 TSL 2 BASIC23.9■■□□□ 1.42
USP48Q86UV5 TMEM11-201ENST00000317635 2095 ntAPPRIS P1 TSL 1 (best) BASIC23.9■■□□□ 1.42
USP48Q86UV5 FAM3A-203ENST00000369641 1359 ntTSL 5 BASIC23.9■■□□□ 1.42
USP48Q86UV5 PTPRJ-208ENST00000615445 4773 ntAPPRIS ALT2 TSL 5 BASIC23.9■■□□□ 1.42
USP48Q86UV5 TTC12-202ENST00000393020 2541 ntTSL 5 BASIC23.89■■□□□ 1.42
USP48Q86UV5 NRXN2-205ENST00000409571 6381 ntAPPRIS ALT2 TSL 5 BASIC23.89■■□□□ 1.42
USP48Q86UV5 MAMSTR-203ENST00000594582 1693 ntTSL 1 (best) BASIC23.89■■□□□ 1.42
USP48Q86UV5 SLC39A5-209ENST00000454355 1968 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.42
USP48Q86UV5 LETM2-208ENST00000524874 1459 ntTSL 5 BASIC23.89■■□□□ 1.42
USP48Q86UV5 NYX-202ENST00000378220 2297 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.42
USP48Q86UV5 DTX2-212ENST00000446820 1770 ntAPPRIS ALT2 TSL 1 (best) BASIC23.89■■□□□ 1.42
USP48Q86UV5 ZNF584-202ENST00000322834 1042 ntTSL 2 BASIC23.89■■□□□ 1.41
USP48Q86UV5 RASGRP2-205ENST00000377489 583 ntTSL 3 BASIC23.89■■□□□ 1.41
USP48Q86UV5 PRKCB-209ENST00000498058 480 ntTSL 3 BASIC23.89■■□□□ 1.41
USP48Q86UV5 ATP6V0E1-204ENST00000519911 718 ntTSL 2 BASIC23.89■■□□□ 1.41
USP48Q86UV5 GCHFR-205ENST00000559932 695 ntTSL 2 BASIC23.89■■□□□ 1.41
USP48Q86UV5 SRSF4-201ENST00000373795 2387 ntAPPRIS P2 TSL 1 (best) BASIC23.89■■□□□ 1.41
USP48Q86UV5 ADM-206ENST00000528655 1889 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.41
USP48Q86UV5 UXS1-203ENST00000409501 1839 ntAPPRIS P3 TSL 1 (best) BASIC23.89■■□□□ 1.41
USP48Q86UV5 HAND2-AS1-237ENST00000616485 2420 ntTSL 2 BASIC23.89■■□□□ 1.41
USP48Q86UV5 MCEMP1-201ENST00000333598 1730 ntAPPRIS P2 TSL 1 (best) BASIC23.88■■□□□ 1.41
USP48Q86UV5 AL161756.1-202ENST00000359491 1717 ntTSL 1 (best) BASIC23.88■■□□□ 1.41
USP48Q86UV5 TPD52-209ENST00000518937 2856 ntTSL 2 BASIC23.88■■□□□ 1.41
USP48Q86UV5 SPNS2-201ENST00000329078 3447 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
USP48Q86UV5 TYMSOS-201ENST00000323813 844 ntTSL 1 (best) BASIC23.88■■□□□ 1.41
USP48Q86UV5 CYB561D2-204ENST00000424512 1212 ntAPPRIS P1 TSL 5 BASIC23.88■■□□□ 1.41
USP48Q86UV5 ATP5S-204ENST00000426751 1171 ntTSL 1 (best) BASIC23.88■■□□□ 1.41
USP48Q86UV5 ECEL1P2-202ENST00000465689 757 ntBASIC23.88■■□□□ 1.41
USP48Q86UV5 TNFSF13-208ENST00000483039 959 ntTSL 2 BASIC23.88■■□□□ 1.41
USP48Q86UV5 NMU-205ENST00000511469 756 ntTSL 3 BASIC23.88■■□□□ 1.41
USP48Q86UV5 SLC39A2-203ENST00000554422 1259 ntTSL 1 (best) BASIC23.88■■□□□ 1.41
USP48Q86UV5 AL358472.4-201ENST00000633140 710 ntBASIC23.88■■□□□ 1.41
USP48Q86UV5 KLHDC4-204ENST00000353170 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC23.88■■□□□ 1.41
USP48Q86UV5 FBXW8-201ENST00000309909 2343 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
USP48Q86UV5 CCDC47-202ENST00000403162 2195 ntAPPRIS P1 TSL 2 BASIC23.88■■□□□ 1.41
USP48Q86UV5 PNMA2-204ENST00000522362 4965 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
USP48Q86UV5 LGALS8-AS1-201ENST00000487567 1457 ntBASIC23.87■■□□□ 1.41
USP48Q86UV5 IDH1-205ENST00000446179 2298 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
USP48Q86UV5 RNASEH2C-203ENST00000528220 1337 ntTSL 2 BASIC23.87■■□□□ 1.41
USP48Q86UV5 HSD3B7-202ENST00000297679 2172 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
USP48Q86UV5 NT5C2-211ENST00000470299 249 ntTSL 5 BASIC23.87■■□□□ 1.41
USP48Q86UV5 LTBR-211ENST00000543190 785 ntTSL 3 BASIC23.87■■□□□ 1.41
USP48Q86UV5 AL121894.2-201ENST00000602977 491 ntBASIC23.87■■□□□ 1.41
USP48Q86UV5 TSSC4-203ENST00000380996 1544 ntAPPRIS ALT2 TSL 1 (best) BASIC23.87■■□□□ 1.41
USP48Q86UV5 COPS7A-222ENST00000626119 1768 ntTSL 3 BASIC23.87■■□□□ 1.41
USP48Q86UV5 IGDCC4-201ENST00000352385 6508 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
USP48Q86UV5 BID-204ENST00000399767 2129 ntTSL 2 BASIC23.87■■□□□ 1.41
USP48Q86UV5 FAM167A-207ENST00000534308 1642 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
USP48Q86UV5 CXCL16-201ENST00000293778 2222 ntAPPRIS P2 TSL 1 (best) BASIC23.87■■□□□ 1.41
USP48Q86UV5 SOCS2-210ENST00000551556 1716 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
USP48Q86UV5 TYMS-201ENST00000323224 1327 ntTSL 1 (best) BASIC23.86■■□□□ 1.41
USP48Q86UV5 C16orf70-201ENST00000219139 2865 ntAPPRIS P1 TSL 1 (best) BASIC23.86■■□□□ 1.41
USP48Q86UV5 TNFRSF25-203ENST00000351959 1441 ntAPPRIS ALT2 TSL 1 (best) BASIC23.86■■□□□ 1.41
USP48Q86UV5 EPHX4-201ENST00000370383 1437 ntAPPRIS P1 TSL 1 (best) BASIC23.86■■□□□ 1.41
USP48Q86UV5 SMG1P5-201ENST00000411546 2362 ntTSL 1 (best) BASIC23.86■■□□□ 1.41
USP48Q86UV5 MAGI2-202ENST00000419488 6800 ntAPPRIS ALT2 TSL 1 (best) BASIC23.86■■□□□ 1.41
USP48Q86UV5 NUP160-203ENST00000526870 1537 ntTSL 1 (best) BASIC23.86■■□□□ 1.41
USP48Q86UV5 TMCO6-203ENST00000394671 1887 ntAPPRIS P1 TSL 2 BASIC23.86■■□□□ 1.41
USP48Q86UV5 PRMT2-210ENST00000458387 1874 ntTSL 1 (best) BASIC23.86■■□□□ 1.41
USP48Q86UV5 RTN4RL2-201ENST00000335099 2203 ntAPPRIS P1 TSL 1 (best) BASIC23.86■■□□□ 1.41
USP48Q86UV5 GPR6-201ENST00000275169 1089 ntAPPRIS P1 BASIC23.86■■□□□ 1.41
USP48Q86UV5 HDAC11-AS1-201ENST00000424112 515 ntTSL 2 BASIC23.86■■□□□ 1.41
USP48Q86UV5 DYNLT3-203ENST00000432389 719 ntTSL 5 BASIC23.86■■□□□ 1.41
USP48Q86UV5 HMGB3P22-201ENST00000442010 597 ntTSL 2 BASIC23.86■■□□□ 1.41
USP48Q86UV5 SSSCA1-206ENST00000531405 879 ntTSL 2 BASIC23.86■■□□□ 1.41
USP48Q86UV5 RNASEK-202ENST00000548577 810 ntTSL 1 (best) BASIC23.86■■□□□ 1.41
USP48Q86UV5 EEF2KMT-206ENST00000587133 873 ntAPPRIS ALT2 TSL 3 BASIC23.86■■□□□ 1.41
USP48Q86UV5 AC011445.1-201ENST00000601911 877 ntTSL 1 (best) BASIC23.86■■□□□ 1.41
USP48Q86UV5 AC097662.2-201ENST00000641359 267 ntAPPRIS P1 BASIC23.86■■□□□ 1.41
USP48Q86UV5 KDELR3-201ENST00000216014 1728 ntAPPRIS P1 TSL 1 (best) BASIC23.86■■□□□ 1.41
USP48Q86UV5 PATZ1-201ENST00000215919 2516 ntTSL 1 (best) BASIC23.86■■□□□ 1.41
USP48Q86UV5 PRKRA-201ENST00000325748 1826 ntAPPRIS P1 TSL 1 (best) BASIC23.86■■□□□ 1.41
USP48Q86UV5 BACE2-201ENST00000328735 2824 ntTSL 1 (best) BASIC23.86■■□□□ 1.41
USP48Q86UV5 ZFYVE9-201ENST00000287727 5194 ntAPPRIS P4 TSL 5 BASIC23.86■■□□□ 1.41
USP48Q86UV5 AL390879.2-201ENST00000424306 2222 ntTSL 2 BASIC23.86■■□□□ 1.41
USP48Q86UV5 RBM45-207ENST00000616198 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC23.86■■□□□ 1.41
USP48Q86UV5 NDUFB9-206ENST00000522532 1319 ntTSL 2 BASIC23.85■■□□□ 1.41
USP48Q86UV5 LGALS9C-212ENST00000583322 1602 ntAPPRIS ALT1 TSL 5 BASIC23.85■■□□□ 1.41
USP48Q86UV5 FAM189B-201ENST00000350210 2379 ntTSL 1 (best) BASIC23.85■■□□□ 1.41
USP48Q86UV5 TMEM53-201ENST00000372235 890 ntTSL 2 BASIC23.85■■□□□ 1.41
USP48Q86UV5 AC007114.1-201ENST00000576871 713 ntTSL 2 BASIC23.85■■□□□ 1.41
USP48Q86UV5 RPL17-204ENST00000579248 790 ntAPPRIS P1 TSL 2 BASIC23.85■■□□□ 1.41
USP48Q86UV5 AC004816.2-201ENST00000622856 284 ntTSL 5 BASIC23.85■■□□□ 1.41
Retrieved 100 of 98,524 protein–RNA pairs in 23.8 ms