Protein–RNA interactions for Protein: Q70EL1

USP54, Inactive ubiquitin carboxyl-terminal hydrolase 54, humanhuman

Predictions only

Length 1,684 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP54Q70EL1 DRAM2-201ENST00000286692 2246 ntAPPRIS P1 TSL 1 (best) BASIC26.11■■□□□ 1.77
USP54Q70EL1 FFAR1-201ENST00000246553 2311 ntAPPRIS P1 BASIC26.11■■□□□ 1.77
USP54Q70EL1 TMED4-203ENST00000457408 2322 ntAPPRIS P1 TSL 1 (best) BASIC26.11■■□□□ 1.77
USP54Q70EL1 PRSS33-204ENST00000576886 1755 ntTSL 1 (best) BASIC26.11■■□□□ 1.77
USP54Q70EL1 RUNX2-210ENST00000576263 2256 ntTSL 5 BASIC26.11■■□□□ 1.77
USP54Q70EL1 SLC38A11-203ENST00000409149 1621 ntAPPRIS P2 TSL 2 BASIC26.11■■□□□ 1.77
USP54Q70EL1 ASCL5-201ENST00000449188 2026 ntAPPRIS P1 TSL 3 BASIC26.11■■□□□ 1.77
USP54Q70EL1 PYDC1-201ENST00000302964 813 ntAPPRIS P1 TSL 1 (best) BASIC26.11■■□□□ 1.77
USP54Q70EL1 AC074183.1-201ENST00000439105 782 ntTSL 5 BASIC26.11■■□□□ 1.77
USP54Q70EL1 AL451069.1-201ENST00000455414 634 ntTSL 1 (best) BASIC26.11■■□□□ 1.77
USP54Q70EL1 NMU-205ENST00000511469 756 ntTSL 3 BASIC26.11■■□□□ 1.77
USP54Q70EL1 DIO1-206ENST00000525202 558 ntTSL 1 (best) BASIC26.11■■□□□ 1.77
USP54Q70EL1 AC011498.2-201ENST00000588798 540 ntTSL 3 BASIC26.11■■□□□ 1.77
USP54Q70EL1 AP000550.4-202ENST00000639755 178 ntBASIC26.11■■□□□ 1.77
USP54Q70EL1 TMEM163-201ENST00000281924 1892 ntAPPRIS P1 TSL 1 (best) BASIC26.11■■□□□ 1.77
USP54Q70EL1 RNF32-208ENST00000432459 1893 ntAPPRIS P1 TSL 1 (best) BASIC26.11■■□□□ 1.77
USP54Q70EL1 AC011511.1-201ENST00000452032 1956 ntAPPRIS P1 TSL 2 BASIC26.11■■□□□ 1.77
USP54Q70EL1 FAM118A-202ENST00000405673 1612 ntTSL 5 BASIC26.11■■□□□ 1.77
USP54Q70EL1 PRKACA-201ENST00000308677 2677 ntAPPRIS P1 TSL 1 (best) BASIC26.1■■□□□ 1.77
USP54Q70EL1 PHACTR2-208ENST00000440869 2569 ntAPPRIS ALT2 TSL 2 BASIC26.1■■□□□ 1.77
USP54Q70EL1 TEAD2-201ENST00000311227 2164 ntAPPRIS P3 TSL 1 (best) BASIC26.1■■□□□ 1.77
USP54Q70EL1 PAOX-201ENST00000278060 1858 ntAPPRIS P1 TSL 1 (best) BASIC26.1■■□□□ 1.77
USP54Q70EL1 GABARAPL3-202ENST00000624044 1851 ntBASIC26.1■■□□□ 1.77
USP54Q70EL1 KLK14-201ENST00000156499 1060 ntAPPRIS P1 TSL 1 (best) BASIC26.1■■□□□ 1.77
USP54Q70EL1 COPE-203ENST00000351079 907 ntTSL 2 BASIC26.1■■□□□ 1.77
USP54Q70EL1 NPM3-201ENST00000370110 877 ntAPPRIS P1 TSL 1 (best) BASIC26.1■■□□□ 1.77
USP54Q70EL1 C16orf91-201ENST00000442039 978 ntAPPRIS P1 TSL 1 (best) BASIC26.1■■□□□ 1.77
USP54Q70EL1 NDUFV2-207ENST00000497577 868 ntTSL 2 BASIC26.1■■□□□ 1.77
USP54Q70EL1 KRTCAP3-207ENST00000543753 956 ntAPPRIS P1 TSL 5 BASIC26.1■■□□□ 1.77
USP54Q70EL1 NBPF14-202ENST00000593495 1082 ntAPPRIS P1 TSL 1 (best) BASIC26.1■■□□□ 1.77
USP54Q70EL1 COLCA2-205ENST00000614153 1264 ntTSL 3 BASIC26.1■■□□□ 1.77
USP54Q70EL1 AL023973.1-201ENST00000624619 620 ntBASIC26.1■■□□□ 1.77
USP54Q70EL1 PCMT1-203ENST00000367384 1938 ntAPPRIS ALT2 TSL 1 (best) BASIC26.1■■□□□ 1.77
USP54Q70EL1 LPAR2-203ENST00000586703 1823 ntAPPRIS P1 TSL 1 (best) BASIC26.1■■□□□ 1.77
USP54Q70EL1 ACAA1-201ENST00000301810 1540 ntTSL 1 (best) BASIC26.1■■□□□ 1.77
USP54Q70EL1 SDHAF3-202ENST00000432641 2060 ntAPPRIS P1 TSL 1 (best) BASIC26.1■■□□□ 1.77
USP54Q70EL1 TMEM110-MUSTN1-202ENST00000504329 1405 ntAPPRIS P1 TSL 5 BASIC26.1■■□□□ 1.77
USP54Q70EL1 P2RY6-210ENST00000542092 1674 ntAPPRIS P1 TSL 2 BASIC26.1■■□□□ 1.77
USP54Q70EL1 LRRC42-203ENST00000371370 2037 ntAPPRIS P1 TSL 2 BASIC26.1■■□□□ 1.77
USP54Q70EL1 PFDN6-206ENST00000463584 1915 ntTSL 3 BASIC26.1■■□□□ 1.77
USP54Q70EL1 CXorf49-202ENST00000535490 1715 ntAPPRIS P1 TSL 5 BASIC26.09■■□□□ 1.77
USP54Q70EL1 CXorf49B-202ENST00000542739 1715 ntAPPRIS P1 TSL 5 BASIC26.09■■□□□ 1.77
USP54Q70EL1 OCIAD2-201ENST00000273860 636 ntTSL 1 (best) BASIC26.09■■□□□ 1.77
USP54Q70EL1 CCNJL-205ENST00000519673 940 ntTSL 2 BASIC26.09■■□□□ 1.77
USP54Q70EL1 NEK4P2-201ENST00000580004 1012 ntBASIC26.09■■□□□ 1.77
USP54Q70EL1 ELAVL1-202ENST00000593807 856 ntTSL 3 BASIC26.09■■□□□ 1.77
USP54Q70EL1 AC243829.1-201ENST00000615128 1059 ntTSL 2 BASIC26.09■■□□□ 1.77
USP54Q70EL1 SUSD3-205ENST00000617293 1076 ntAPPRIS ALT2 TSL 3 BASIC26.09■■□□□ 1.77
USP54Q70EL1 OCIAD2-210ENST00000620187 697 ntTSL 3 BASIC26.09■■□□□ 1.77
USP54Q70EL1 AP006284.1-201ENST00000527620 2210 ntTSL 2 BASIC26.09■■□□□ 1.77
USP54Q70EL1 FAM131A-204ENST00000418281 1664 ntTSL 5 BASIC26.09■■□□□ 1.77
USP54Q70EL1 AKIRIN1-201ENST00000372984 1330 ntTSL 2 BASIC26.09■■□□□ 1.77
USP54Q70EL1 CYP46A1-202ENST00000380228 1597 ntTSL 2 BASIC26.09■■□□□ 1.77
USP54Q70EL1 OTUB1-210ENST00000541478 1803 ntTSL 5 BASIC26.09■■□□□ 1.77
USP54Q70EL1 PCDHB12-202ENST00000622978 2093 ntTSL 2 BASIC26.09■■□□□ 1.77
USP54Q70EL1 CYP2D7-203ENST00000433992 1740 ntTSL 1 (best) BASIC26.09■■□□□ 1.77
USP54Q70EL1 CYP2D7-207ENST00000612115 1734 ntAPPRIS P1 TSL 5 BASIC26.09■■□□□ 1.77
USP54Q70EL1 SLC22A17-202ENST00000354772 2238 ntAPPRIS ALT2 TSL 1 (best) BASIC26.09■■□□□ 1.77
USP54Q70EL1 VGF-202ENST00000445482 2477 ntAPPRIS P1 TSL 5 BASIC26.09■■□□□ 1.77
USP54Q70EL1 CRELD2-201ENST00000328268 1357 ntAPPRIS P3 TSL 1 (best) BASIC26.09■■□□□ 1.77
USP54Q70EL1 PEX16-210ENST00000532681 1639 ntTSL 3 BASIC26.09■■□□□ 1.77
USP54Q70EL1 MAN1B1-AS1-201ENST00000596585 1872 ntBASIC26.09■■□□□ 1.77
USP54Q70EL1 ANXA8L1-203ENST00000613703 1874 ntTSL 2 BASIC26.09■■□□□ 1.77
USP54Q70EL1 CNOT9-209ENST00000627282 1621 ntTSL 2 BASIC26.09■■□□□ 1.77
USP54Q70EL1 PLAUR-203ENST00000340093 1548 ntAPPRIS P3 TSL 1 (best) BASIC26.09■■□□□ 1.77
USP54Q70EL1 C12orf42-205ENST00000548048 1532 ntAPPRIS ALT2 TSL 5 BASIC26.09■■□□□ 1.77
USP54Q70EL1 ISOC2-202ENST00000425675 998 ntAPPRIS P1 TSL 1 (best) BASIC26.09■■□□□ 1.77
USP54Q70EL1 KRT18P38-201ENST00000449496 1282 ntBASIC26.09■■□□□ 1.77
USP54Q70EL1 AL512604.3-201ENST00000569583 964 ntBASIC26.09■■□□□ 1.77
USP54Q70EL1 DBP-204ENST00000599385 709 ntTSL 3 BASIC26.09■■□□□ 1.77
USP54Q70EL1 SMIM20-205ENST00000614775 1190 ntTSL 5 BASIC26.09■■□□□ 1.77
USP54Q70EL1 AC215522.2-202ENST00000633163 1143 ntTSL 5 BASIC26.09■■□□□ 1.77
USP54Q70EL1 AC005332.1-201ENST00000577698 1310 ntBASIC26.08■■□□□ 1.77
USP54Q70EL1 RTN1-202ENST00000342503 1703 ntAPPRIS ALT1 TSL 1 (best) BASIC26.08■■□□□ 1.77
USP54Q70EL1 PML-204ENST00000359928 1726 ntTSL 1 (best) BASIC26.08■■□□□ 1.77
USP54Q70EL1 MORF4L1-215ENST00000559345 1468 ntTSL 2 BASIC26.08■■□□□ 1.77
USP54Q70EL1 SLC52A2-209ENST00000530047 1757 ntAPPRIS P1 TSL 2 BASIC26.08■■□□□ 1.77
USP54Q70EL1 METTL1-202ENST00000324871 2066 ntAPPRIS P1 TSL 1 (best) BASIC26.08■■□□□ 1.77
USP54Q70EL1 CPLX3-201ENST00000395018 2082 ntAPPRIS P1 TSL 1 (best) BASIC26.08■■□□□ 1.77
USP54Q70EL1 ZNF668-207ENST00000535577 2396 ntAPPRIS P1 TSL 5 BASIC26.08■■□□□ 1.77
USP54Q70EL1 PXMP4-201ENST00000217398 979 ntTSL 2 BASIC26.08■■□□□ 1.77
USP54Q70EL1 TRPT1-202ENST00000394546 1058 ntAPPRIS ALT1 TSL 5 BASIC26.08■■□□□ 1.77
USP54Q70EL1 YPEL3-201ENST00000398838 935 ntAPPRIS P1 TSL 1 (best) BASIC26.08■■□□□ 1.77
USP54Q70EL1 UPK3BP1-201ENST00000428678 509 ntBASIC26.08■■□□□ 1.77
USP54Q70EL1 PSMB5-205ENST00000493471 1117 ntTSL 1 (best) BASIC26.08■■□□□ 1.77
USP54Q70EL1 TRPT1-210ENST00000541278 941 ntTSL 2 BASIC26.08■■□□□ 1.77
USP54Q70EL1 EEF2KMT-206ENST00000587133 873 ntAPPRIS ALT2 TSL 3 BASIC26.08■■□□□ 1.77
USP54Q70EL1 USF2-205ENST00000594064 1179 ntTSL 2 BASIC26.08■■□□□ 1.77
USP54Q70EL1 AC022154.1-201ENST00000600303 766 ntTSL 3 BASIC26.08■■□□□ 1.77
USP54Q70EL1 RBM14-RBM4-201ENST00000412278 1566 ntAPPRIS P1 TSL 2 BASIC26.08■■□□□ 1.77
USP54Q70EL1 AC116565.2-201ENST00000637674 1854 ntTSL 2 BASIC26.08■■□□□ 1.77
USP54Q70EL1 RYK-209ENST00000623711 2934 ntAPPRIS ALT2 TSL 1 (best) BASIC26.08■■□□□ 1.76
USP54Q70EL1 CENPA-202ENST00000335756 1452 ntAPPRIS P1 TSL 1 (best) BASIC26.08■■□□□ 1.76
USP54Q70EL1 AC148477.3-202ENST00000376617 1766 ntTSL 2 BASIC26.08■■□□□ 1.76
USP54Q70EL1 LGALS9-202ENST00000313648 1378 ntTSL 3 BASIC26.07■■□□□ 1.76
USP54Q70EL1 SAYSD1-201ENST00000229903 2020 ntAPPRIS P1 TSL 1 (best) BASIC26.07■■□□□ 1.76
USP54Q70EL1 MAZ-201ENST00000219782 2698 ntAPPRIS P4 TSL 1 (best) BASIC26.07■■□□□ 1.76
USP54Q70EL1 TSPY5P-201ENST00000426936 936 ntBASIC26.07■■□□□ 1.76
USP54Q70EL1 AC002467.1-201ENST00000457510 657 ntTSL 3 BASIC26.07■■□□□ 1.76
USP54Q70EL1 AC027682.5-201ENST00000567122 530 ntTSL 3 BASIC26.07■■□□□ 1.76
Retrieved 100 of 98,524 protein–RNA pairs in 18.6 ms